Wall clock time and date at job start Sat Apr 11 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47386 * 2 1 4 4 C 1.50694 * 109.47232 * 239.99405 * 2 1 3 5 5 O 1.21285 * 120.00154 * 240.00290 * 4 2 1 6 6 N 1.34780 * 120.00135 * 60.00167 * 4 2 1 7 7 C 1.46500 * 119.99955 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.46709 * 180.02562 * 7 6 4 9 9 O 1.42894 * 110.90149 * 303.86407 * 8 7 6 10 10 C 1.55394 * 111.02391 * 67.60475 * 8 7 6 11 11 C 1.54323 * 102.89709 * 153.63418 * 10 8 7 12 12 N 1.47441 * 107.37092 * 337.89293 * 11 10 8 13 13 C 1.46899 * 110.99964 * 236.66280 * 12 11 10 14 14 C 1.50699 * 109.47326 * 176.64981 * 13 12 11 15 15 O 1.21299 * 119.99842 * 6.12626 * 14 13 12 16 16 N 1.34771 * 120.00290 * 186.12786 * 14 13 12 17 17 C 1.37101 * 120.00296 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99299 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00059 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00055 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99973 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46636 * 89.99991 * 21 19 17 23 23 H 1.48501 * 109.47061 * 209.99744 * 21 19 17 24 24 H 1.48492 * 109.46829 * 330.00151 * 21 19 17 25 25 C 1.47848 * 108.56525 * 358.92790 * 12 11 10 26 26 C 1.53004 * 109.46753 * 119.99229 * 2 1 3 27 27 C 1.52991 * 117.50119 * 248.74627 * 26 2 1 28 28 C 1.52996 * 117.49827 * 180.08135 * 26 2 1 29 29 H 1.09005 * 109.46637 * 60.00200 * 1 2 3 30 30 H 1.08995 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47367 * 300.00811 * 1 2 3 32 32 H 0.97001 * 119.99651 * 0.02562 * 6 4 2 33 33 H 1.08995 * 109.47263 * 60.00038 * 7 6 4 34 34 H 1.09003 * 109.46662 * 299.99657 * 7 6 4 35 35 H 0.96699 * 114.00130 * 56.13666 * 9 8 7 36 36 H 1.08991 * 110.68539 * 35.32826 * 10 8 7 37 37 H 1.09007 * 110.84735 * 272.01219 * 10 8 7 38 38 H 1.08995 * 109.88817 * 218.40171 * 11 10 8 39 39 H 1.09003 * 109.88542 * 97.37801 * 11 10 8 40 40 H 1.09007 * 109.46960 * 296.64772 * 13 12 11 41 41 H 1.08998 * 109.47400 * 56.64670 * 13 12 11 42 42 H 0.97003 * 120.00050 * 359.97438 * 16 14 13 43 43 H 0.96998 * 119.99737 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.37310 * 142.92469 * 25 12 11 45 45 H 1.08998 * 110.37431 * 265.15610 * 25 12 11 46 46 H 1.09001 * 115.54938 * 34.42012 * 26 2 1 47 47 H 1.09000 * 117.50295 * 359.97438 * 27 26 2 48 48 H 1.09000 * 117.49968 * 145.02228 * 27 26 2 49 49 H 1.09002 * 117.50343 * 214.98348 * 28 26 2 50 50 H 1.09004 * 117.49930 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7068 -0.2502 -2.4545 7 6 2.1947 -0.9412 -3.6506 8 6 1.6853 -0.2196 -4.8999 9 8 0.2598 -0.1222 -4.8868 10 6 2.3351 1.1854 -5.0360 11 6 2.2806 1.4443 -6.5564 12 7 2.1713 0.1334 -7.2225 13 6 3.2643 -0.0611 -8.1844 14 6 3.1668 -1.4405 -8.7835 15 8 2.2143 -2.1467 -8.5280 16 7 4.1378 -1.8894 -9.6032 17 6 4.0488 -3.1441 -10.1486 18 1 3.2007 -3.7728 -9.9210 19 6 5.0497 -3.6067 -10.9941 20 7 6.0814 -2.8414 -11.2713 21 14 4.9288 -5.3165 -11.7367 22 1 4.2103 -5.2428 -13.0342 23 1 6.2938 -5.8583 -11.9568 24 1 4.1861 -6.2074 -10.8095 25 6 2.1818 -0.9227 -6.1879 26 6 2.0399 -0.7211 1.2494 27 6 2.7392 0.1233 2.3165 28 6 3.5549 -0.8263 1.4355 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 1.1494 0.5387 -2.5436 33 1 1.8310 -1.9687 -3.6504 34 1 3.2847 -0.9416 -3.6507 35 1 -0.0976 0.3109 -4.0996 36 1 3.3667 1.1681 -4.6848 37 1 1.7557 1.9347 -4.4965 38 1 3.1908 1.9495 -6.8794 39 1 1.4115 2.0563 -6.7974 40 1 3.1890 0.6848 -8.9757 41 1 4.2212 0.0464 -7.6737 42 1 4.8994 -1.3245 -9.8078 43 1 6.7799 -3.1643 -11.8618 44 1 1.5048 -1.7311 -6.4639 45 1 3.1923 -1.3062 -6.0474 46 1 1.4317 -1.5593 1.5896 47 1 2.8364 1.1925 2.1284 48 1 2.5913 -0.1596 3.3587 49 1 3.9434 -1.7334 1.8985 50 1 4.1883 -0.3821 0.6676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724391009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:43 Heat of formation + Delta-G solvation = -118.283146 kcal Electronic energy + Delta-G solvation = -29898.066363 eV Core-core repulsion = 25731.860530 eV Total energy + Delta-G solvation = -4166.205833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49119 -40.76723 -39.69429 -38.04256 -37.07392 -35.90226 -35.37418 -33.46427 -33.29455 -32.17678 -30.36923 -28.61042 -26.96055 -25.81945 -25.17398 -23.21333 -22.67674 -22.15589 -21.59908 -21.01769 -20.81237 -19.89477 -18.70504 -18.06562 -17.41158 -17.12422 -16.76024 -16.55437 -16.30070 -16.25003 -16.01327 -15.92947 -15.55552 -15.35421 -14.89890 -14.75198 -14.47265 -14.38732 -13.77614 -13.71123 -13.56720 -13.43076 -13.39717 -13.21847 -13.01471 -12.77498 -12.68788 -12.50930 -12.43874 -12.36815 -12.16091 -12.07239 -12.01749 -11.81979 -11.49351 -11.37520 -11.01588 -10.97496 -10.62569 -10.26861 -10.21564 -10.02342 -9.21146 -8.48465 -5.96890 1.35960 1.39618 1.52397 1.62904 1.97975 2.02865 2.27202 2.78527 2.97373 3.06309 3.18619 3.22610 3.46823 3.58720 3.61643 3.71832 3.82078 3.93045 4.16080 4.18643 4.23659 4.28453 4.31244 4.37882 4.40716 4.51787 4.56106 4.59281 4.66615 4.73102 4.81768 4.82231 4.86503 4.91274 5.02217 5.04775 5.07746 5.22198 5.23091 5.26207 5.27372 5.38539 5.39440 5.85372 5.99362 6.14866 6.46991 6.59002 6.80227 7.11381 7.23328 7.54146 8.10432 8.68957 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.002142 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.979067 B =13066.236725 C =13931.625840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 H 0.123 0.877 4 C 0.511 3.489 5 O -0.577 6.577 6 N -0.712 5.712 7 C 0.112 3.888 8 C 0.126 3.874 9 O -0.547 6.547 10 C -0.152 4.152 11 C 0.042 3.958 12 N -0.523 5.523 13 C 0.051 3.949 14 C 0.436 3.564 15 O -0.616 6.616 16 N -0.573 5.573 17 C -0.332 4.332 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.919 5.919 21 Si 0.992 3.008 22 H -0.270 1.270 23 H -0.269 1.269 24 H -0.275 1.275 25 C 0.072 3.928 26 C -0.147 4.147 27 C -0.156 4.156 28 C -0.181 4.181 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.414 0.586 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.386 0.614 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.099 0.901 47 H 0.111 0.889 48 H 0.105 0.895 49 H 0.083 0.917 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 16.185 24.894 30.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 H 0.141 0.859 4 C 0.299 3.701 5 O -0.455 6.455 6 N -0.367 5.367 7 C -0.014 4.014 8 C 0.083 3.917 9 O -0.354 6.354 10 C -0.190 4.190 11 C -0.085 4.085 12 N -0.248 5.248 13 C -0.080 4.080 14 C 0.223 3.777 15 O -0.502 6.502 16 N -0.211 5.211 17 C -0.462 4.462 18 H 0.095 0.905 19 C -0.213 4.213 20 N -0.560 5.560 21 Si 0.816 3.184 22 H -0.195 1.195 23 H -0.194 1.194 24 H -0.200 1.200 25 C -0.056 4.056 26 C -0.166 4.166 27 C -0.193 4.193 28 C -0.219 4.219 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.252 0.748 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.131 0.869 41 H 0.088 0.912 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.117 0.883 47 H 0.129 0.871 48 H 0.123 0.877 49 H 0.101 0.899 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.770 14.670 24.138 29.295 hybrid contribution 1.162 -0.604 -0.140 1.317 sum -6.608 14.065 23.997 28.590 Atomic orbital electron populations 1.21787 0.90614 1.02663 1.04629 1.20945 0.98835 1.00305 0.89095 0.85905 1.21371 0.79197 0.84194 0.85373 1.90727 1.39353 1.28171 1.87261 1.45735 1.54152 1.32279 1.04495 1.21616 0.99440 0.96278 0.84029 1.22358 0.81863 0.95222 0.92229 1.86732 1.18504 1.82913 1.47263 1.23485 1.02510 0.96085 0.96914 1.22947 1.02745 0.90066 0.92752 1.63237 1.43413 1.02881 1.15269 1.22051 0.94002 0.94406 0.97513 1.20833 0.83699 0.90146 0.83013 1.90506 1.34765 1.60239 1.64707 1.41927 1.21458 1.15531 1.42138 1.19634 1.07538 0.92816 1.26174 0.90502 1.26028 0.94589 1.03447 0.97234 1.69668 1.10544 1.38682 1.37146 0.84943 0.77892 0.77173 0.78425 1.19547 1.19414 1.19988 1.22724 0.99009 0.95045 0.88868 1.22045 0.95381 1.02193 0.96975 1.23179 1.02033 0.97858 0.96243 1.22757 0.94109 1.01943 1.03059 0.90020 0.93404 0.89362 0.74779 0.92990 0.91238 0.76454 0.89550 0.86589 0.90857 0.89448 0.86928 0.91239 0.76987 0.91282 0.92161 0.93849 0.88324 0.87113 0.87682 0.89868 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.07 71.98 0.65 -0.31 16 2 C -0.07 -0.79 2.88 -11.54 -0.03 -0.82 16 3 H 0.12 0.76 7.90 -2.39 -0.02 0.75 16 4 C 0.51 9.78 7.03 87.65 0.62 10.40 16 5 O -0.58 -17.22 15.09 -3.04 -0.05 -17.26 16 6 N -0.71 -10.57 5.09 -463.05 -2.36 -12.93 16 7 C 0.11 2.52 4.88 86.38 0.42 2.94 16 8 C 0.13 2.87 0.97 -9.32 -0.01 2.86 16 9 O -0.55 -12.31 13.19 -148.98 -1.97 -14.27 16 10 C -0.15 -2.43 5.94 31.87 0.19 -2.25 16 11 C 0.04 0.91 6.89 86.65 0.60 1.50 16 12 N -0.52 -17.39 5.07 -890.09 -4.51 -21.90 16 13 C 0.05 1.82 5.07 85.56 0.43 2.26 16 14 C 0.44 21.38 7.34 87.66 0.64 22.02 16 15 O -0.62 -35.24 13.89 -3.09 -0.04 -35.29 16 16 N -0.57 -30.09 5.29 -306.98 -1.62 -31.72 16 17 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.72 5.50 84.92 0.47 -0.26 16 20 N -0.92 -50.31 13.05 21.66 0.28 -50.03 16 21 Si 0.99 44.01 29.55 68.60 2.03 46.03 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 25 C 0.07 2.50 4.48 86.77 0.39 2.89 16 26 C -0.15 -2.13 4.72 -10.80 -0.05 -2.18 16 27 C -0.16 -1.65 10.18 30.62 0.31 -1.34 16 28 C -0.18 -3.14 8.98 30.62 0.27 -2.87 16 29 H 0.08 0.24 7.57 -2.38 -0.02 0.22 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.41 2.79 6.69 -92.71 -0.62 2.17 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 35 H 0.39 4.32 7.69 -74.06 -0.57 3.75 16 36 H 0.09 1.30 8.00 -2.39 -0.02 1.28 16 37 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 1.35 7.58 -2.39 -0.02 1.33 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.11 3.52 8.14 -2.38 -0.02 3.50 16 41 H 0.07 2.15 8.13 -2.39 -0.02 2.13 16 42 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 43 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 44 H 0.06 2.68 6.94 -2.39 -0.02 2.67 16 45 H 0.04 1.58 7.63 -2.39 -0.02 1.56 16 46 H 0.10 1.56 8.11 -2.39 -0.02 1.54 16 47 H 0.11 0.79 8.05 -2.39 -0.02 0.77 16 48 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 50 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 Total: -1.00 -81.18 404.11 -3.47 -84.65 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.95 Total: 36.36 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.72 Total: 16.36 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -8.21 Total: -116.57 kcal Atomic # 8 Polarization: -64.77 SS G_CDS: -2.05 Total: -66.82 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -81.18 -3.47 -84.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724391009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.636 kcal (2) G-P(sol) polarization free energy of solvation -81.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds