Wall clock time and date at job start Sat Apr 11 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46787 * 2 1 4 4 N 1.46501 * 109.47017 * 240.00129 * 2 1 3 5 5 C 1.34774 * 120.00002 * 84.99687 * 4 2 1 6 6 O 1.21282 * 120.00022 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00066 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.47284 * 180.02562 * 7 5 4 9 9 H 1.09004 * 110.33059 * 307.25465 * 8 7 5 10 10 C 1.54475 * 110.37445 * 185.00376 * 8 7 5 11 11 C 1.54509 * 104.06265 * 217.19346 * 10 8 7 12 12 C 1.54482 * 104.06399 * 359.97438 * 11 10 8 13 13 O 1.44426 * 104.80032 * 23.98346 * 12 11 10 14 14 C 1.52992 * 109.47142 * 120.00440 * 2 1 3 15 15 C 1.53517 * 114.17189 * 185.05369 * 14 2 1 16 16 N 1.47482 * 87.93279 * 139.85779 * 15 14 2 17 17 C 1.46902 * 111.00083 * 221.29710 * 16 15 14 18 18 C 1.50701 * 109.47067 * 170.00048 * 17 16 15 19 19 O 1.21295 * 120.00059 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99855 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00037 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99766 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99908 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99876 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99805 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47182 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47157 * 119.99409 * 25 23 21 28 28 H 1.48498 * 109.47170 * 239.99590 * 25 23 21 29 29 C 1.47487 * 87.83768 * 332.99278 * 16 15 14 30 30 H 1.08997 * 109.47246 * 299.14939 * 1 2 3 31 31 H 1.09003 * 109.47098 * 59.14434 * 1 2 3 32 32 H 1.09002 * 109.46974 * 179.14624 * 1 2 3 33 33 H 0.97000 * 120.00414 * 265.00136 * 4 2 1 34 34 H 1.08999 * 109.47811 * 300.00383 * 7 5 4 35 35 H 1.08995 * 109.47106 * 60.00750 * 7 5 4 36 36 H 1.09005 * 110.50822 * 335.83254 * 10 8 7 37 37 H 1.08997 * 110.51193 * 98.40698 * 10 8 7 38 38 H 1.08997 * 110.51909 * 118.64292 * 11 10 8 39 39 H 1.09005 * 110.50660 * 241.35492 * 11 10 8 40 40 H 1.08998 * 110.37131 * 142.80885 * 12 11 10 41 41 H 1.09004 * 110.37464 * 265.04359 * 12 11 10 42 42 H 1.08998 * 113.25958 * 52.10033 * 14 2 1 43 43 H 1.09000 * 113.47504 * 25.09322 * 15 14 2 44 44 H 1.09000 * 113.47573 * 254.62505 * 15 14 2 45 45 H 1.09002 * 109.46859 * 289.99979 * 17 16 15 46 46 H 1.09001 * 109.46792 * 50.00421 * 17 16 15 47 47 H 0.97004 * 119.99679 * 0.02562 * 20 18 17 48 48 H 0.96997 * 119.99497 * 180.02562 * 24 23 21 49 49 H 1.08994 * 113.47535 * 141.78043 * 29 16 15 50 50 H 1.08994 * 113.47334 * 272.24377 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8589 1.1586 -2.4115 7 6 2.6498 -0.7285 -3.5875 8 6 2.7017 0.2548 -4.7586 9 1 1.7390 0.7516 -4.8790 10 6 3.0946 -0.4790 -6.0600 11 6 3.9951 0.5323 -6.8040 12 6 4.0393 1.7578 -5.8645 13 8 3.7488 1.2277 -4.5528 14 6 2.0400 -0.7213 1.2491 15 6 3.5649 -0.6783 1.4213 16 7 3.3425 -0.4705 2.8644 17 6 4.2711 0.5334 3.4010 18 6 3.8600 0.8987 4.8041 19 8 2.8886 0.3748 5.3073 20 7 4.5716 1.8077 5.4996 21 6 4.1979 2.1397 6.7762 22 1 3.3330 1.6732 7.2243 23 6 4.9313 3.0773 7.4932 24 7 5.9833 3.6452 6.9477 25 14 4.4217 3.5302 9.2323 26 1 3.2126 2.7558 9.6113 27 1 5.5278 3.2124 10.1708 28 1 4.1193 4.9826 9.2971 29 6 2.0451 0.1404 2.5196 30 1 -0.3633 0.5005 0.8975 31 1 -0.3633 0.5271 -0.8822 32 1 -0.3633 -1.0276 -0.0153 33 1 2.2490 -1.6318 -1.1527 34 1 3.6492 -1.1203 -3.3980 35 1 1.9776 -1.5507 -3.8326 36 1 3.6495 -1.3892 -5.8325 37 1 2.2081 -0.7107 -6.6503 38 1 4.9952 0.1222 -6.9445 39 1 3.5540 0.8027 -7.7634 40 1 5.0301 2.2118 -5.8793 41 1 3.2839 2.4873 -6.1566 42 1 1.6035 -1.7111 1.3830 43 1 4.0338 0.1727 0.9273 44 1 4.0549 -1.6238 1.1892 45 1 5.2812 0.1240 3.4133 46 1 4.2472 1.4233 2.7720 47 1 5.3481 2.2270 5.0970 48 1 6.4954 4.2994 7.4484 49 1 1.2473 -0.1113 3.2183 50 1 2.1085 1.2098 2.3187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725246123.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:52 Heat of formation + Delta-G solvation = -87.809254 kcal Electronic energy + Delta-G solvation = -29301.539316 eV Core-core repulsion = 25136.654930 eV Total energy + Delta-G solvation = -4164.884386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.67450 -40.01623 -38.99736 -37.73091 -35.36247 -33.86669 -32.86430 -32.19982 -31.36246 -31.02630 -29.44909 -27.00952 -25.80503 -25.65576 -24.13812 -22.85477 -21.81389 -21.22153 -20.57912 -19.64153 -19.17499 -17.88273 -17.44248 -16.71639 -16.51254 -16.05444 -16.02665 -15.71904 -15.47515 -14.95611 -14.87482 -14.54175 -14.22383 -14.06167 -13.80027 -13.67462 -13.52734 -12.98642 -12.79653 -12.71166 -12.43984 -12.31745 -12.20714 -12.14390 -11.88888 -11.64220 -11.57176 -11.51843 -11.38420 -11.07264 -11.05510 -10.89023 -10.75367 -10.38331 -10.31829 -10.19830 -10.02972 -9.87650 -9.49050 -9.23028 -8.68249 -8.22233 -7.94018 -6.39437 -3.80182 2.53048 2.93528 3.18038 3.28340 3.35738 3.54412 3.92138 4.05408 4.14495 4.24254 4.25983 4.40174 4.51558 4.60226 4.66817 4.67825 4.83560 4.99700 5.00442 5.07206 5.10189 5.19425 5.24510 5.27304 5.30665 5.32112 5.39332 5.46251 5.48276 5.55759 5.59385 5.62483 5.67614 5.72836 5.75447 5.81326 5.87787 6.04352 6.12496 6.28639 6.29998 6.39140 6.55769 6.61687 7.24326 7.35445 7.57552 8.08276 8.11650 8.63799 9.20301 9.56668 10.08380 10.78479 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.001871 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.211052 B =14961.004182 C =15832.250679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.153 3.847 3 H 0.088 0.912 4 N -0.726 5.726 5 C 0.513 3.487 6 O -0.529 6.529 7 C -0.137 4.137 8 C 0.090 3.910 9 H 0.077 0.923 10 C -0.153 4.153 11 C -0.156 4.156 12 C 0.043 3.957 13 O -0.358 6.358 14 C -0.129 4.129 15 C 0.001 3.999 16 N -0.444 5.444 17 C 0.009 3.991 18 C 0.445 3.555 19 O -0.579 6.579 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.026 3.974 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.399 0.601 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.093 0.907 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.960 -10.017 -28.529 30.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 H 0.106 0.894 4 N -0.378 5.378 5 C 0.299 3.701 6 O -0.404 6.404 7 C -0.177 4.177 8 C 0.032 3.968 9 H 0.094 0.906 10 C -0.191 4.191 11 C -0.193 4.193 12 C -0.034 4.034 13 O -0.277 6.277 14 C -0.149 4.149 15 C -0.128 4.128 16 N -0.166 5.166 17 C -0.123 4.123 18 C 0.230 3.770 19 O -0.463 6.463 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.104 4.104 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.233 0.767 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.073 0.927 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.111 0.889 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.525 -9.840 -27.419 29.651 hybrid contribution 0.556 0.792 -0.040 0.969 sum -4.969 -9.048 -27.460 29.336 Atomic orbital electron populations 1.22127 0.94988 1.02082 1.02668 1.20958 0.94220 0.97129 0.82847 0.89403 1.46063 1.67958 1.14012 1.09719 1.20506 0.77605 0.87470 0.84513 1.90741 1.49108 1.15726 1.84847 1.21784 1.04053 0.98881 0.93030 1.22691 0.92733 0.88842 0.92519 0.90558 1.23021 1.00331 0.99363 0.96337 1.22942 1.00793 0.96227 0.99387 1.23389 1.01547 0.95598 0.82880 1.89241 1.55034 1.56478 1.26962 1.23114 0.96590 1.00964 0.94215 1.23859 0.95769 1.02131 0.91026 1.68821 1.02558 1.33336 1.11843 1.22494 0.98314 0.94899 0.96629 1.19667 0.86362 0.83722 0.87248 1.90518 1.29117 1.55765 1.70879 1.41881 1.27382 1.36605 1.14328 1.19750 1.12426 1.21031 0.89534 0.87874 1.25271 0.95791 0.96676 1.00312 1.69624 1.17736 1.28649 1.38320 0.85795 0.78647 0.78212 0.81658 1.19226 1.20751 1.20781 1.23637 0.95235 0.97029 0.94454 0.91200 0.92303 0.92444 0.76724 0.87946 0.87626 0.90425 0.90362 0.90625 0.90582 0.89133 0.92291 0.87591 0.91468 0.89916 0.89136 0.92681 0.77498 0.91939 0.88861 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.47 37.16 0.35 -1.24 16 2 C 0.15 1.62 2.34 -67.93 -0.16 1.46 16 3 H 0.09 1.17 7.45 -51.93 -0.39 0.78 16 4 N -0.73 -6.26 4.96 -53.81 -0.27 -6.52 16 5 C 0.51 5.36 7.72 -10.99 -0.08 5.27 16 6 O -0.53 -7.96 15.27 -1.05 -0.02 -7.97 16 7 C -0.14 -0.94 5.33 -27.88 -0.15 -1.08 16 8 C 0.09 0.75 2.74 -25.95 -0.07 0.68 16 9 H 0.08 0.71 7.91 -51.93 -0.41 0.30 16 10 C -0.15 -0.81 6.63 -25.17 -0.17 -0.98 16 11 C -0.16 -0.85 7.09 -25.16 -0.18 -1.03 16 12 C 0.04 0.33 7.63 37.94 0.29 0.62 16 13 O -0.36 -4.02 10.92 -41.84 -0.46 -4.48 16 14 C -0.13 -1.45 3.48 -90.09 -0.31 -1.76 16 15 C 0.00 0.02 7.17 -7.53 -0.05 -0.04 16 16 N -0.44 -7.50 6.06 -246.03 -1.49 -8.99 16 17 C 0.01 0.16 5.31 -4.97 -0.03 0.14 16 18 C 0.44 10.83 7.62 -10.99 -0.08 10.75 16 19 O -0.58 -16.03 15.34 5.54 0.09 -15.95 16 20 N -0.57 -14.72 5.29 -10.96 -0.06 -14.78 16 21 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 22 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -25.01 13.05 55.50 0.72 -24.28 16 25 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 C 0.03 0.40 6.28 -7.53 -0.05 0.35 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.40 2.31 8.60 -40.82 -0.35 1.96 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.34 7.87 -51.93 -0.41 -0.07 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 0.84 7.73 -51.93 -0.40 0.44 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 46 H 0.06 0.94 7.56 -51.93 -0.39 0.55 16 47 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 48 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.09 1.58 8.13 -51.93 -0.42 1.16 16 50 H 0.07 1.06 7.57 -51.93 -0.39 0.66 16 LS Contribution 407.80 15.07 6.15 6.15 Total: -1.00 -35.78 407.80 -9.79 -45.56 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -8.50 Total: 9.89 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -0.93 Total: 4.99 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -1.09 Total: -54.58 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.39 Total: -28.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.78 -9.79 -45.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725246123.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.247 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds