Wall clock time and date at job start Sat Apr 11 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46787 * 2 1 4 4 N 1.46501 * 109.47017 * 240.00129 * 2 1 3 5 5 C 1.34774 * 120.00002 * 84.99687 * 4 2 1 6 6 O 1.21282 * 120.00022 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00066 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.47284 * 180.02562 * 7 5 4 9 9 H 1.09004 * 110.33059 * 307.25465 * 8 7 5 10 10 C 1.54475 * 110.37445 * 185.00376 * 8 7 5 11 11 C 1.54509 * 104.06265 * 217.19346 * 10 8 7 12 12 C 1.54482 * 104.06399 * 359.97438 * 11 10 8 13 13 O 1.44426 * 104.80032 * 23.98346 * 12 11 10 14 14 C 1.52992 * 109.47142 * 120.00440 * 2 1 3 15 15 C 1.53517 * 114.17189 * 185.05369 * 14 2 1 16 16 N 1.47482 * 87.93279 * 139.85779 * 15 14 2 17 17 C 1.46902 * 111.00083 * 221.29710 * 16 15 14 18 18 C 1.50701 * 109.47067 * 170.00048 * 17 16 15 19 19 O 1.21295 * 120.00059 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99855 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00037 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99766 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99908 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99876 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99805 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47182 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47157 * 119.99409 * 25 23 21 28 28 H 1.48498 * 109.47170 * 239.99590 * 25 23 21 29 29 C 1.47487 * 87.83768 * 332.99278 * 16 15 14 30 30 H 1.08997 * 109.47246 * 299.14939 * 1 2 3 31 31 H 1.09003 * 109.47098 * 59.14434 * 1 2 3 32 32 H 1.09002 * 109.46974 * 179.14624 * 1 2 3 33 33 H 0.97000 * 120.00414 * 265.00136 * 4 2 1 34 34 H 1.08999 * 109.47811 * 300.00383 * 7 5 4 35 35 H 1.08995 * 109.47106 * 60.00750 * 7 5 4 36 36 H 1.09005 * 110.50822 * 335.83254 * 10 8 7 37 37 H 1.08997 * 110.51193 * 98.40698 * 10 8 7 38 38 H 1.08997 * 110.51909 * 118.64292 * 11 10 8 39 39 H 1.09005 * 110.50660 * 241.35492 * 11 10 8 40 40 H 1.08998 * 110.37131 * 142.80885 * 12 11 10 41 41 H 1.09004 * 110.37464 * 265.04359 * 12 11 10 42 42 H 1.08998 * 113.25958 * 52.10033 * 14 2 1 43 43 H 1.09000 * 113.47504 * 25.09322 * 15 14 2 44 44 H 1.09000 * 113.47573 * 254.62505 * 15 14 2 45 45 H 1.09002 * 109.46859 * 289.99979 * 17 16 15 46 46 H 1.09001 * 109.46792 * 50.00421 * 17 16 15 47 47 H 0.97004 * 119.99679 * 0.02562 * 20 18 17 48 48 H 0.96997 * 119.99497 * 180.02562 * 24 23 21 49 49 H 1.08994 * 113.47535 * 141.78043 * 29 16 15 50 50 H 1.08994 * 113.47334 * 272.24377 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8589 1.1586 -2.4115 7 6 2.6498 -0.7285 -3.5875 8 6 2.7017 0.2548 -4.7586 9 1 1.7390 0.7516 -4.8790 10 6 3.0946 -0.4790 -6.0600 11 6 3.9951 0.5323 -6.8040 12 6 4.0393 1.7578 -5.8645 13 8 3.7488 1.2277 -4.5528 14 6 2.0400 -0.7213 1.2491 15 6 3.5649 -0.6783 1.4213 16 7 3.3425 -0.4705 2.8644 17 6 4.2711 0.5334 3.4010 18 6 3.8600 0.8987 4.8041 19 8 2.8886 0.3748 5.3073 20 7 4.5716 1.8077 5.4996 21 6 4.1979 2.1397 6.7762 22 1 3.3330 1.6732 7.2243 23 6 4.9313 3.0773 7.4932 24 7 5.9833 3.6452 6.9477 25 14 4.4217 3.5302 9.2323 26 1 3.2126 2.7558 9.6113 27 1 5.5278 3.2124 10.1708 28 1 4.1193 4.9826 9.2971 29 6 2.0451 0.1404 2.5196 30 1 -0.3633 0.5005 0.8975 31 1 -0.3633 0.5271 -0.8822 32 1 -0.3633 -1.0276 -0.0153 33 1 2.2490 -1.6318 -1.1527 34 1 3.6492 -1.1203 -3.3980 35 1 1.9776 -1.5507 -3.8326 36 1 3.6495 -1.3892 -5.8325 37 1 2.2081 -0.7107 -6.6503 38 1 4.9952 0.1222 -6.9445 39 1 3.5540 0.8027 -7.7634 40 1 5.0301 2.2118 -5.8793 41 1 3.2839 2.4873 -6.1566 42 1 1.6035 -1.7111 1.3830 43 1 4.0338 0.1727 0.9273 44 1 4.0549 -1.6238 1.1892 45 1 5.2812 0.1240 3.4133 46 1 4.2472 1.4233 2.7720 47 1 5.3481 2.2270 5.0970 48 1 6.4954 4.2994 7.4484 49 1 1.2473 -0.1113 3.2183 50 1 2.1085 1.2098 2.3187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725246123.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:51 Heat of formation + Delta-G solvation = -116.710683 kcal Electronic energy + Delta-G solvation = -29302.792576 eV Core-core repulsion = 25136.654930 eV Total energy + Delta-G solvation = -4166.137646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74571 -40.87544 -39.91516 -39.45688 -36.38061 -35.90831 -33.55356 -33.33094 -32.80411 -32.05359 -30.64534 -27.64825 -27.44411 -26.77639 -25.67815 -23.63454 -22.65666 -21.83071 -21.40951 -21.01945 -20.64183 -19.92301 -18.22140 -17.89314 -17.50064 -17.16949 -16.78376 -16.66212 -16.61335 -16.36064 -16.19746 -15.70604 -15.63695 -15.39567 -14.95869 -14.73067 -14.47275 -14.22758 -13.95056 -13.64917 -13.54378 -13.48041 -13.26895 -13.07174 -12.95952 -12.92821 -12.59265 -12.56585 -12.44042 -12.18677 -12.13857 -12.04393 -11.91898 -11.85159 -11.55743 -11.46155 -11.44721 -10.75066 -10.68505 -10.37877 -10.10410 -10.04602 -9.77025 -8.49457 -5.98637 1.34596 1.39616 1.54371 1.75586 2.00578 2.17763 2.26707 2.82547 3.01294 3.16377 3.27185 3.40860 3.66443 3.68432 3.78927 3.97252 4.07728 4.11051 4.15161 4.18781 4.20036 4.30925 4.34949 4.39903 4.45637 4.49258 4.51317 4.56050 4.63462 4.73639 4.76108 4.82203 4.83995 4.87012 4.95718 4.99450 5.00223 5.16233 5.18251 5.24296 5.29765 5.35797 5.38889 5.57405 5.87363 5.99108 6.04819 6.56388 6.66994 7.09284 7.39070 7.51763 8.07215 8.68345 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.001871 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.211052 B =14961.004182 C =15832.250679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.057 0.943 4 N -0.711 5.711 5 C 0.508 3.492 6 O -0.583 6.583 7 C -0.129 4.129 8 C 0.080 3.920 9 H 0.055 0.945 10 C -0.144 4.144 11 C -0.151 4.151 12 C 0.032 3.968 13 O -0.397 6.397 14 C -0.098 4.098 15 C 0.009 3.991 16 N -0.469 5.469 17 C 0.021 3.979 18 C 0.441 3.559 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.271 1.271 29 C 0.016 3.984 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.418 0.582 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.128 0.872 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.070 0.930 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 -12.084 -30.129 32.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.075 0.925 4 N -0.363 5.363 5 C 0.296 3.704 6 O -0.463 6.463 7 C -0.169 4.169 8 C 0.022 3.978 9 H 0.073 0.927 10 C -0.182 4.182 11 C -0.189 4.189 12 C -0.044 4.044 13 O -0.316 6.316 14 C -0.117 4.117 15 C -0.119 4.119 16 N -0.191 5.191 17 C -0.110 4.110 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.215 4.215 24 N -0.562 5.562 25 Si 0.819 3.181 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.196 1.196 29 C -0.114 4.114 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.255 0.745 34 H 0.137 0.863 35 H 0.162 0.838 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.146 0.854 43 H 0.086 0.914 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.088 0.912 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.975 -11.946 -29.047 31.799 hybrid contribution 0.372 1.455 0.436 1.564 sum -4.603 -10.490 -28.612 30.820 Atomic orbital electron populations 1.22073 0.94373 1.03180 1.01749 1.20693 0.94613 0.95752 0.83479 0.92463 1.45888 1.67131 1.14744 1.08568 1.21232 0.76577 0.86963 0.85678 1.90726 1.51545 1.18279 1.85702 1.21869 1.05592 0.98956 0.90437 1.22852 0.91297 0.88899 0.94728 0.92689 1.23010 1.01100 0.99377 0.94698 1.22941 1.01544 0.95066 0.99322 1.23557 1.01520 0.96779 0.82591 1.89199 1.55869 1.57637 1.28931 1.22938 0.95953 1.00739 0.92097 1.23910 0.96702 1.03387 0.87897 1.68822 1.02693 1.32715 1.14849 1.22374 0.99522 0.96280 0.92871 1.20689 0.85210 0.82207 0.89086 1.90483 1.30635 1.56773 1.72384 1.41963 1.27848 1.37338 1.14054 1.19709 1.12806 1.22626 0.91144 0.90285 1.26091 0.95479 0.95875 1.04007 1.69686 1.18089 1.28669 1.39758 0.84837 0.78289 0.78148 0.76842 1.19746 1.19427 1.19589 1.23637 0.94259 0.97214 0.96296 0.91906 0.93516 0.90247 0.74508 0.86278 0.83822 0.88739 0.88778 0.89821 0.89216 0.88860 0.92844 0.85433 0.91448 0.87215 0.87223 0.91231 0.77098 0.91264 0.91153 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.47 71.98 0.68 -2.30 16 2 C 0.16 3.24 2.34 44.99 0.11 3.35 16 3 H 0.06 1.56 7.45 -2.39 -0.02 1.54 16 4 N -0.71 -10.71 4.96 -442.54 -2.19 -12.90 16 5 C 0.51 10.01 7.72 87.66 0.68 10.68 16 6 O -0.58 -18.01 15.27 3.28 0.05 -17.96 16 7 C -0.13 -1.43 5.33 29.85 0.16 -1.27 16 8 C 0.08 1.24 2.74 31.10 0.09 1.32 16 9 H 0.06 1.04 7.91 -2.38 -0.02 1.02 16 10 C -0.14 -1.15 6.63 31.61 0.21 -0.94 16 11 C -0.15 -1.36 7.09 31.61 0.22 -1.13 16 12 C 0.03 0.50 7.63 72.49 0.55 1.05 16 13 O -0.40 -8.93 10.92 -142.67 -1.56 -10.49 16 14 C -0.10 -2.02 3.48 -10.45 -0.04 -2.06 16 15 C 0.01 0.21 7.17 83.58 0.60 0.81 16 16 N -0.47 -15.45 6.06 -932.31 -5.65 -21.10 16 17 C 0.02 0.78 5.31 85.56 0.45 1.24 16 18 C 0.44 21.99 7.62 87.66 0.67 22.66 16 19 O -0.62 -35.32 15.34 -3.08 -0.05 -35.37 16 20 N -0.57 -30.74 5.29 -306.98 -1.62 -32.37 16 21 C -0.33 -19.51 9.68 84.04 0.81 -18.70 16 22 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.92 -51.01 13.05 21.66 0.28 -50.73 16 25 Si 1.00 43.97 29.55 68.60 2.03 45.99 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 29 C 0.02 0.49 6.28 83.58 0.53 1.01 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.42 3.24 8.60 -92.71 -0.80 2.45 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.09 0.46 7.87 -2.38 -0.02 0.44 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.07 1.56 7.73 -2.39 -0.02 1.54 16 44 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 46 H 0.07 2.36 7.56 -2.39 -0.02 2.34 16 47 H 0.40 20.17 7.90 -92.71 -0.73 19.43 16 48 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 49 H 0.07 2.48 8.13 -2.39 -0.02 2.46 16 50 H 0.06 1.83 7.57 -2.39 -0.02 1.82 16 Total: -1.00 -81.60 407.80 -3.11 -84.71 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.58 Total: 34.85 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 6.19 Total: 15.37 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -9.19 Total: -117.10 kcal Atomic # 8 Polarization: -62.27 SS G_CDS: -1.55 Total: -63.82 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -81.60 -3.11 -84.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725246123.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.004 kcal (2) G-P(sol) polarization free energy of solvation -81.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds