Wall clock time and date at job start Sat Apr 11 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47398 * 2 1 4 4 N 1.46503 * 109.47308 * 239.99715 * 2 1 3 5 5 C 1.34779 * 119.99830 * 85.00291 * 4 2 1 6 6 O 1.21283 * 120.00224 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99857 * 180.02562 * 5 4 2 8 8 C 1.53006 * 109.46905 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.82379 * 54.42895 * 8 7 5 10 10 C 1.54384 * 109.82910 * 175.41170 * 8 7 5 11 11 C 1.55564 * 102.27422 * 140.87007 * 10 8 7 12 12 C 1.54940 * 100.82396 * 325.88082 * 11 10 8 13 13 O 1.43234 * 109.82710 * 293.54595 * 8 7 5 14 14 C 1.53000 * 109.47084 * 120.00095 * 2 1 3 15 15 C 1.53940 * 113.73144 * 281.87694 * 14 2 1 16 16 N 1.48189 * 86.09729 * 221.95633 * 15 14 2 17 17 C 1.46903 * 111.07069 * 137.52076 * 16 15 14 18 18 C 1.50696 * 109.47247 * 70.56767 * 17 16 15 19 19 O 1.21296 * 120.00028 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99904 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99674 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00093 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99673 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99985 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99832 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47181 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47041 * 120.00291 * 25 23 21 28 28 H 1.48502 * 109.47160 * 240.00216 * 25 23 21 29 29 C 1.47958 * 90.80228 * 24.59905 * 16 15 14 30 30 H 1.09002 * 109.47344 * 180.08231 * 1 2 3 31 31 H 1.08995 * 109.47185 * 300.08969 * 1 2 3 32 32 H 1.09004 * 109.46660 * 60.08624 * 1 2 3 33 33 H 0.97000 * 120.00009 * 265.00453 * 4 2 1 34 34 H 1.08996 * 109.47551 * 59.99624 * 7 5 4 35 35 H 1.08997 * 109.47020 * 299.99613 * 7 5 4 36 36 H 1.09000 * 110.84535 * 259.05778 * 10 8 7 37 37 H 1.09001 * 110.84839 * 22.47570 * 10 8 7 38 38 H 1.09001 * 111.21850 * 207.98208 * 11 10 8 39 39 H 1.09001 * 111.13626 * 83.74188 * 11 10 8 40 40 H 1.09001 * 110.31453 * 277.47546 * 12 11 10 41 41 H 1.09008 * 110.31103 * 155.40617 * 12 11 10 42 42 H 1.09004 * 112.93919 * 53.43726 * 14 2 1 43 43 H 1.08997 * 113.75578 * 336.23073 * 15 14 2 44 44 H 1.08994 * 113.76442 * 107.60258 * 15 14 2 45 45 H 1.09009 * 109.46870 * 190.56389 * 17 16 15 46 46 H 1.08996 * 109.47095 * 310.56013 * 17 16 15 47 47 H 0.96998 * 119.99924 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99498 * 179.97438 * 24 23 21 49 49 H 1.09001 * 113.75687 * 221.08833 * 29 16 15 50 50 H 1.08995 * 113.86339 * 89.73525 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8592 1.1586 -2.4115 7 6 2.6490 -0.7289 -3.5877 8 6 2.7000 0.2541 -4.7591 9 1 3.2922 1.1268 -4.4837 10 6 3.3208 -0.4342 -5.9937 11 6 2.4527 0.1266 -7.1564 12 6 1.0759 0.2526 -6.4569 13 8 1.3722 0.6594 -5.1114 14 6 2.0400 -0.7213 1.2492 15 6 1.9730 0.1326 2.5284 16 7 3.3107 -0.4202 2.8460 17 6 4.2036 0.6237 3.3665 18 6 3.7539 1.0270 4.7471 19 8 2.7845 0.4973 5.2480 20 7 4.4282 1.9771 5.4248 21 6 4.0186 2.3443 6.6806 22 1 3.1560 1.8721 7.1270 23 6 4.7141 3.3234 7.3795 24 7 5.7640 3.8977 6.8365 25 14 4.1566 3.8233 9.0908 26 1 2.9588 3.0325 9.4720 27 1 5.2494 3.5651 10.0625 28 1 3.8186 5.2694 9.0987 29 6 3.5700 -0.6729 1.4114 30 1 -0.3634 -1.0277 0.0015 31 1 -0.3633 0.5152 0.8891 32 1 -0.3633 0.5125 -0.8908 33 1 2.2490 -1.6318 -1.1526 34 1 1.9761 -1.5507 -3.8326 35 1 3.6481 -1.1214 -3.3985 36 1 4.3648 -0.1450 -6.1150 37 1 3.2260 -1.5177 -5.9224 38 1 2.4075 -0.5754 -7.9890 39 1 2.8170 1.0999 -7.4849 40 1 0.5620 -0.7086 -6.4570 41 1 0.4663 1.0069 -6.9546 42 1 1.6178 -1.7195 1.3656 43 1 1.9750 1.2062 2.3402 44 1 1.1923 -0.1772 3.2229 45 1 5.2227 0.2396 3.4141 46 1 4.1726 1.4906 2.7065 47 1 5.2031 2.4010 5.0240 48 1 6.2492 4.5815 7.3243 49 1 4.0627 -1.6252 1.2153 50 1 4.0402 0.1635 0.8943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725246132.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:59 Heat of formation + Delta-G solvation = -90.270841 kcal Electronic energy + Delta-G solvation = -29301.766579 eV Core-core repulsion = 25136.775451 eV Total energy + Delta-G solvation = -4164.991129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.59828 -39.97909 -38.95738 -37.70253 -35.29175 -33.86732 -32.84481 -32.20770 -31.34917 -31.00698 -29.38930 -27.10854 -25.84808 -25.72407 -24.10756 -22.62240 -22.00373 -21.23958 -20.50194 -19.53789 -19.16374 -17.87681 -17.48877 -17.02995 -16.63511 -16.17233 -15.92592 -15.51486 -15.31486 -14.97959 -14.66212 -14.49581 -14.26298 -13.91151 -13.79631 -13.68771 -13.44761 -13.22648 -12.96818 -12.67242 -12.46052 -12.23438 -12.17314 -12.10973 -11.86905 -11.64072 -11.56822 -11.53209 -11.38194 -11.29106 -11.06708 -10.84712 -10.75782 -10.46959 -10.32464 -10.20016 -9.88522 -9.79618 -9.49480 -9.19570 -8.61077 -8.19796 -7.94373 -6.39952 -3.80685 2.57236 2.96537 3.17740 3.28112 3.35484 3.49946 3.91316 4.01754 4.02544 4.23415 4.24959 4.39215 4.46195 4.60081 4.66554 4.73484 4.79640 4.94311 5.00640 5.07469 5.12273 5.20368 5.23935 5.25058 5.30348 5.32148 5.34316 5.41552 5.50241 5.54412 5.56469 5.65507 5.73030 5.75667 5.77257 5.83600 5.91053 6.07819 6.15017 6.28662 6.33749 6.42767 6.65373 6.76087 7.23764 7.38614 7.57102 8.07869 8.15867 8.63304 9.19856 9.56214 10.07870 10.77958 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023012 B = 0.001771 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.482016 B =15804.148726 C =16171.368861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.087 0.913 4 N -0.727 5.727 5 C 0.513 3.487 6 O -0.526 6.526 7 C -0.154 4.154 8 C 0.096 3.904 9 H 0.088 0.912 10 C -0.153 4.153 11 C -0.156 4.156 12 C 0.045 3.955 13 O -0.361 6.361 14 C -0.129 4.129 15 C 0.034 3.966 16 N -0.454 5.454 17 C 0.010 3.990 18 C 0.444 3.556 19 O -0.579 6.579 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.005 3.995 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.398 0.602 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.053 0.947 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.086 0.914 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 -11.383 -28.224 30.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 H 0.105 0.895 4 N -0.379 5.379 5 C 0.299 3.701 6 O -0.401 6.401 7 C -0.194 4.194 8 C 0.038 3.962 9 H 0.106 0.894 10 C -0.190 4.190 11 C -0.194 4.194 12 C -0.032 4.032 13 O -0.280 6.280 14 C -0.148 4.148 15 C -0.096 4.096 16 N -0.176 5.176 17 C -0.122 4.122 18 C 0.229 3.771 19 O -0.463 6.463 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.124 4.124 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.232 0.768 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.071 0.929 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.717 -11.126 -27.197 29.761 hybrid contribution 0.691 0.660 0.021 0.956 sum -4.026 -10.466 -27.177 29.399 Atomic orbital electron populations 1.22127 0.95025 1.02067 1.02711 1.21019 0.94295 0.97110 0.82947 0.89480 1.46087 1.68087 1.13976 1.09752 1.20494 0.77789 0.87530 0.84251 1.90747 1.48856 1.15925 1.84599 1.22147 1.03474 0.99912 0.93862 1.22471 0.84716 0.96461 0.92547 0.89392 1.23254 1.00695 1.01081 0.94018 1.23305 0.95542 1.02282 0.98261 1.23405 0.96546 1.00050 0.83206 1.88630 1.30859 1.79296 1.29216 1.23395 0.96282 1.00994 0.94137 1.23776 0.94295 0.97370 0.94126 1.68433 1.02270 1.33438 1.13449 1.22455 0.98598 0.94478 0.96641 1.19691 0.86491 0.83622 0.87249 1.90517 1.29007 1.56694 1.70078 1.41884 1.28099 1.34189 1.16020 1.19753 1.12873 1.18671 0.91457 0.87870 1.25266 0.95870 0.96681 1.00203 1.69624 1.18853 1.27127 1.38750 0.85798 0.78701 0.78290 0.81538 1.19223 1.20761 1.20774 1.23964 0.95675 1.01955 0.90808 0.92526 0.91258 0.92175 0.76835 0.88585 0.87933 0.89758 0.90266 0.89934 0.90242 0.92479 0.89822 0.87924 0.91413 0.88543 0.89238 0.92857 0.77514 0.91945 0.89604 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.44 37.16 0.35 -1.37 16 2 C 0.15 1.64 2.29 -67.93 -0.16 1.48 16 3 H 0.09 1.17 7.48 -51.93 -0.39 0.78 16 4 N -0.73 -6.44 4.94 -53.80 -0.27 -6.70 16 5 C 0.51 5.48 7.69 -10.98 -0.08 5.40 16 6 O -0.53 -8.10 15.15 -6.86 -0.10 -8.20 16 7 C -0.15 -1.06 5.27 -27.88 -0.15 -1.20 16 8 C 0.10 0.79 3.05 -26.00 -0.08 0.71 16 9 H 0.09 0.85 7.95 -51.93 -0.41 0.44 16 10 C -0.15 -0.76 6.55 -24.64 -0.16 -0.92 16 11 C -0.16 -0.78 7.18 -24.34 -0.17 -0.95 16 12 C 0.04 0.31 7.77 38.18 0.30 0.61 16 13 O -0.36 -3.92 10.36 -47.64 -0.49 -4.41 16 14 C -0.13 -1.44 3.35 -89.69 -0.30 -1.74 16 15 C 0.03 0.52 6.23 -2.63 -0.02 0.50 16 16 N -0.45 -7.57 5.95 -239.54 -1.42 -8.99 16 17 C 0.01 0.19 5.31 -4.98 -0.03 0.16 16 18 C 0.44 10.74 7.59 -10.99 -0.08 10.65 16 19 O -0.58 -15.91 15.13 5.54 0.08 -15.83 16 20 N -0.57 -14.64 5.29 -10.96 -0.06 -14.70 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 25 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 29 C 0.01 0.06 7.41 -2.76 -0.02 0.04 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.40 2.39 8.60 -40.82 -0.35 2.04 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.29 7.85 -51.93 -0.41 -0.11 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.08 7.68 -51.93 -0.40 0.68 16 44 H 0.10 1.64 8.09 -51.93 -0.42 1.22 16 45 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 46 H 0.05 0.90 7.70 -51.93 -0.40 0.50 16 47 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -35.63 407.30 -9.77 -45.40 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -8.51 Total: 9.91 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -0.84 Total: 5.26 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -1.02 Total: -54.59 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.51 Total: -28.44 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.63 -9.77 -45.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725246132.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.870 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds