Wall clock time and date at job start Sat Apr 11 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47398 * 2 1 4 4 N 1.46503 * 109.47308 * 239.99715 * 2 1 3 5 5 C 1.34779 * 119.99830 * 85.00291 * 4 2 1 6 6 O 1.21283 * 120.00224 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99857 * 180.02562 * 5 4 2 8 8 C 1.53006 * 109.46905 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.82379 * 54.42895 * 8 7 5 10 10 C 1.54384 * 109.82910 * 175.41170 * 8 7 5 11 11 C 1.55564 * 102.27422 * 140.87007 * 10 8 7 12 12 C 1.54940 * 100.82396 * 325.88082 * 11 10 8 13 13 O 1.43234 * 109.82710 * 293.54595 * 8 7 5 14 14 C 1.53000 * 109.47084 * 120.00095 * 2 1 3 15 15 C 1.53940 * 113.73144 * 281.87694 * 14 2 1 16 16 N 1.48189 * 86.09729 * 221.95633 * 15 14 2 17 17 C 1.46903 * 111.07069 * 137.52076 * 16 15 14 18 18 C 1.50696 * 109.47247 * 70.56767 * 17 16 15 19 19 O 1.21296 * 120.00028 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99904 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99674 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00093 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99673 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99985 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99832 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47181 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47041 * 120.00291 * 25 23 21 28 28 H 1.48502 * 109.47160 * 240.00216 * 25 23 21 29 29 C 1.47958 * 90.80228 * 24.59905 * 16 15 14 30 30 H 1.09002 * 109.47344 * 180.08231 * 1 2 3 31 31 H 1.08995 * 109.47185 * 300.08969 * 1 2 3 32 32 H 1.09004 * 109.46660 * 60.08624 * 1 2 3 33 33 H 0.97000 * 120.00009 * 265.00453 * 4 2 1 34 34 H 1.08996 * 109.47551 * 59.99624 * 7 5 4 35 35 H 1.08997 * 109.47020 * 299.99613 * 7 5 4 36 36 H 1.09000 * 110.84535 * 259.05778 * 10 8 7 37 37 H 1.09001 * 110.84839 * 22.47570 * 10 8 7 38 38 H 1.09001 * 111.21850 * 207.98208 * 11 10 8 39 39 H 1.09001 * 111.13626 * 83.74188 * 11 10 8 40 40 H 1.09001 * 110.31453 * 277.47546 * 12 11 10 41 41 H 1.09008 * 110.31103 * 155.40617 * 12 11 10 42 42 H 1.09004 * 112.93919 * 53.43726 * 14 2 1 43 43 H 1.08997 * 113.75578 * 336.23073 * 15 14 2 44 44 H 1.08994 * 113.76442 * 107.60258 * 15 14 2 45 45 H 1.09009 * 109.46870 * 190.56389 * 17 16 15 46 46 H 1.08996 * 109.47095 * 310.56013 * 17 16 15 47 47 H 0.96998 * 119.99924 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99498 * 179.97438 * 24 23 21 49 49 H 1.09001 * 113.75687 * 221.08833 * 29 16 15 50 50 H 1.08995 * 113.86339 * 89.73525 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8592 1.1586 -2.4115 7 6 2.6490 -0.7289 -3.5877 8 6 2.7000 0.2541 -4.7591 9 1 3.2922 1.1268 -4.4837 10 6 3.3208 -0.4342 -5.9937 11 6 2.4527 0.1266 -7.1564 12 6 1.0759 0.2526 -6.4569 13 8 1.3722 0.6594 -5.1114 14 6 2.0400 -0.7213 1.2492 15 6 1.9730 0.1326 2.5284 16 7 3.3107 -0.4202 2.8460 17 6 4.2036 0.6237 3.3665 18 6 3.7539 1.0270 4.7471 19 8 2.7845 0.4973 5.2480 20 7 4.4282 1.9771 5.4248 21 6 4.0186 2.3443 6.6806 22 1 3.1560 1.8721 7.1270 23 6 4.7141 3.3234 7.3795 24 7 5.7640 3.8977 6.8365 25 14 4.1566 3.8233 9.0908 26 1 2.9588 3.0325 9.4720 27 1 5.2494 3.5651 10.0625 28 1 3.8186 5.2694 9.0987 29 6 3.5700 -0.6729 1.4114 30 1 -0.3634 -1.0277 0.0015 31 1 -0.3633 0.5152 0.8891 32 1 -0.3633 0.5125 -0.8908 33 1 2.2490 -1.6318 -1.1526 34 1 1.9761 -1.5507 -3.8326 35 1 3.6481 -1.1214 -3.3985 36 1 4.3648 -0.1450 -6.1150 37 1 3.2260 -1.5177 -5.9224 38 1 2.4075 -0.5754 -7.9890 39 1 2.8170 1.0999 -7.4849 40 1 0.5620 -0.7086 -6.4570 41 1 0.4663 1.0069 -6.9546 42 1 1.6178 -1.7195 1.3656 43 1 1.9750 1.2062 2.3402 44 1 1.1923 -0.1772 3.2229 45 1 5.2227 0.2396 3.4141 46 1 4.1726 1.4906 2.7065 47 1 5.2031 2.4010 5.0240 48 1 6.2492 4.5815 7.3243 49 1 4.0627 -1.6252 1.2153 50 1 4.0402 0.1635 0.8943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725246132.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:58 Heat of formation + Delta-G solvation = -118.594211 kcal Electronic energy + Delta-G solvation = -29302.994773 eV Core-core repulsion = 25136.775451 eV Total energy + Delta-G solvation = -4166.219322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61084 -40.86800 -39.91226 -39.38202 -36.34135 -35.88694 -33.51729 -33.32073 -32.80483 -32.00475 -30.60739 -27.72731 -27.41500 -26.91929 -25.63029 -23.44338 -22.61199 -22.01603 -21.33584 -20.99403 -20.51851 -19.90885 -18.17481 -17.89343 -17.72832 -17.42523 -16.81168 -16.66244 -16.55227 -16.22998 -16.05154 -15.69351 -15.46436 -15.22419 -14.90127 -14.80124 -14.32294 -14.11415 -13.92078 -13.83341 -13.64393 -13.52874 -13.41558 -13.09041 -12.93403 -12.79396 -12.58112 -12.55782 -12.43493 -12.17328 -12.13584 -12.00501 -11.89582 -11.81162 -11.67243 -11.59184 -11.50781 -10.73170 -10.44846 -10.35771 -10.08502 -10.03752 -9.66715 -8.49021 -5.98039 1.34855 1.39909 1.54512 1.78046 2.01751 2.19704 2.27094 2.80174 2.99118 3.17142 3.26323 3.44160 3.59849 3.66475 3.80837 3.94249 4.03479 4.11339 4.16486 4.22865 4.26100 4.31885 4.35405 4.41495 4.48006 4.50639 4.52397 4.55719 4.65736 4.75133 4.78121 4.81721 4.85138 4.86276 4.95278 5.00545 5.02201 5.10330 5.18320 5.31443 5.32532 5.37780 5.40877 5.58390 5.88167 6.05899 6.22733 6.57222 6.68531 7.10040 7.41381 7.52782 8.08304 8.68766 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023012 B = 0.001771 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.482016 B =15804.148726 C =16171.368861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.058 0.942 4 N -0.712 5.712 5 C 0.507 3.493 6 O -0.582 6.582 7 C -0.144 4.144 8 C 0.086 3.914 9 H 0.060 0.940 10 C -0.143 4.143 11 C -0.152 4.152 12 C 0.035 3.965 13 O -0.401 6.401 14 C -0.099 4.099 15 C 0.023 3.977 16 N -0.478 5.478 17 C 0.023 3.977 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.271 1.271 29 C 0.015 3.985 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.417 0.583 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.115 0.885 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.852 -13.554 -29.762 32.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.077 0.923 4 N -0.365 5.365 5 C 0.295 3.705 6 O -0.461 6.461 7 C -0.184 4.184 8 C 0.028 3.972 9 H 0.078 0.922 10 C -0.180 4.180 11 C -0.190 4.190 12 C -0.041 4.041 13 O -0.321 6.321 14 C -0.118 4.118 15 C -0.107 4.107 16 N -0.201 5.201 17 C -0.109 4.109 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.196 1.196 29 C -0.113 4.113 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.254 0.746 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.142 0.858 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.127 0.873 46 H 0.086 0.914 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.133 0.867 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.618 -13.338 -28.762 31.910 hybrid contribution 0.318 1.342 0.469 1.457 sum -3.300 -11.996 -28.293 30.908 Atomic orbital electron populations 1.22074 0.94887 1.02982 1.01528 1.20742 0.94316 0.95910 0.83737 0.92348 1.45911 1.67233 1.14716 1.08600 1.21257 0.76750 0.87019 0.85432 1.90732 1.51321 1.18565 1.85481 1.22190 1.05598 0.99505 0.91059 1.22582 0.83809 0.96234 0.94577 0.92184 1.23243 1.00861 1.01986 0.91954 1.23305 0.94142 1.02678 0.98830 1.23594 0.97923 1.00456 0.82128 1.88593 1.32232 1.80201 1.31093 1.23186 0.95999 1.00778 0.91860 1.23736 0.93503 0.97379 0.96073 1.68441 1.02330 1.32699 1.16592 1.22339 0.99707 0.95828 0.92990 1.20738 0.85375 0.82161 0.88990 1.90484 1.30542 1.57655 1.71585 1.41965 1.28555 1.34960 1.15755 1.19708 1.13265 1.20202 0.93115 0.90315 1.26071 0.95653 0.95960 1.03698 1.69683 1.19219 1.27199 1.40108 0.84847 0.78256 0.78109 0.76966 1.19781 1.19448 1.19609 1.24056 0.96253 1.03437 0.87565 0.90483 0.91926 0.93919 0.74590 0.86388 0.84551 0.88675 0.88048 0.87691 0.90882 0.91263 0.90190 0.85828 0.92725 0.90844 0.87251 0.91352 0.77100 0.91281 0.86697 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.44 71.98 0.68 -2.61 16 2 C 0.16 3.31 2.29 44.99 0.10 3.41 16 3 H 0.06 1.60 7.48 -2.39 -0.02 1.58 16 4 N -0.71 -11.07 4.94 -442.52 -2.19 -13.26 16 5 C 0.51 10.28 7.69 87.66 0.67 10.96 16 6 O -0.58 -18.48 15.15 8.83 0.13 -18.35 16 7 C -0.14 -1.61 5.27 29.85 0.16 -1.45 16 8 C 0.09 1.33 3.05 31.07 0.09 1.43 16 9 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 10 C -0.14 -1.05 6.55 31.95 0.21 -0.84 16 11 C -0.15 -1.23 7.18 32.14 0.23 -1.00 16 12 C 0.04 0.46 7.77 72.65 0.56 1.03 16 13 O -0.40 -8.77 10.36 -137.11 -1.42 -10.19 16 14 C -0.10 -2.04 3.35 -10.15 -0.03 -2.08 16 15 C 0.02 0.71 6.23 86.37 0.54 1.24 16 16 N -0.48 -15.44 5.95 -911.75 -5.42 -20.87 16 17 C 0.02 0.83 5.31 85.56 0.45 1.29 16 18 C 0.44 21.75 7.59 87.66 0.67 22.41 16 19 O -0.62 -35.04 15.13 -3.08 -0.05 -35.08 16 20 N -0.57 -30.54 5.29 -306.98 -1.62 -32.17 16 21 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 22 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.92 -50.79 13.05 21.66 0.28 -50.51 16 25 Si 0.99 43.85 29.55 68.60 2.03 45.88 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 29 C 0.02 0.32 7.41 86.41 0.64 0.96 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.38 8.08 -2.39 -0.02 1.36 16 32 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.42 3.40 8.60 -92.71 -0.80 2.60 16 34 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.10 0.32 7.85 -2.39 -0.02 0.30 16 38 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.05 1.82 7.68 -2.39 -0.02 1.80 16 44 H 0.07 2.60 8.09 -2.39 -0.02 2.58 16 45 H 0.11 3.52 8.14 -2.38 -0.02 3.50 16 46 H 0.07 2.27 7.70 -2.39 -0.02 2.25 16 47 H 0.40 20.00 7.90 -92.71 -0.73 19.27 16 48 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 49 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.07 1.52 7.75 -2.39 -0.02 1.50 16 Total: -1.00 -81.74 407.30 -2.58 -84.32 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.58 Total: 34.40 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 6.26 Total: 15.82 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -8.95 Total: -116.80 kcal Atomic # 8 Polarization: -62.29 SS G_CDS: -1.33 Total: -63.62 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -81.74 -2.58 -84.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725246132.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.275 kcal (2) G-P(sol) polarization free energy of solvation -81.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds