Wall clock time and date at job start Sat Apr 11 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46963 * 2 1 4 4 N 1.46490 * 109.47587 * 239.99480 * 2 1 3 5 5 C 1.34773 * 120.00160 * 85.00163 * 4 2 1 6 6 O 1.21281 * 119.99921 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00340 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47186 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47186 * 179.97438 * 8 7 5 10 10 O 1.21287 * 119.99808 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00340 * 180.02562 * 9 8 7 12 12 C 1.47155 * 120.97978 * 359.71289 * 11 9 8 13 13 C 1.53713 * 108.16110 * 129.43413 * 12 11 9 14 14 O 1.42963 * 109.14254 * 52.53835 * 13 12 11 15 15 C 1.42962 * 114.17035 * 297.28526 * 14 13 12 16 16 C 1.47146 * 120.98566 * 180.02562 * 11 9 8 17 17 C 1.53002 * 109.47205 * 119.99147 * 2 1 3 18 18 C 1.53943 * 113.84170 * 201.35735 * 17 2 1 19 19 N 1.47580 * 86.11607 * 90.75462 * 18 17 2 20 20 C 1.36942 * 134.48865 * 204.64321 * 19 18 17 21 21 H 1.08001 * 120.00154 * 173.48015 * 20 19 18 22 22 C 1.38822 * 119.99853 * 353.47866 * 20 19 18 23 23 N 1.31616 * 119.99817 * 5.06680 * 22 20 19 24 24 Si 1.86798 * 119.99687 * 185.06527 * 22 20 19 25 25 H 1.48508 * 109.46852 * 94.98901 * 24 22 20 26 26 H 1.48494 * 109.47029 * 214.98411 * 24 22 20 27 27 H 1.48497 * 109.47536 * 334.99106 * 24 22 20 28 28 C 1.47576 * 91.01740 * 24.63982 * 19 18 17 29 29 H 1.08996 * 109.46742 * 60.00771 * 1 2 3 30 30 H 1.09003 * 109.46487 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46950 * 300.00695 * 1 2 3 32 32 H 0.97004 * 120.00305 * 264.99720 * 4 2 1 33 33 H 1.09000 * 109.47062 * 299.99818 * 7 5 4 34 34 H 1.09002 * 109.46849 * 59.99475 * 7 5 4 35 35 H 1.09000 * 109.47176 * 299.99999 * 8 7 5 36 36 H 1.09002 * 109.47450 * 60.00094 * 8 7 5 37 37 H 1.08999 * 109.68488 * 249.21593 * 12 11 9 38 38 H 1.08997 * 109.68182 * 9.76790 * 12 11 9 39 39 H 1.08993 * 109.65689 * 292.57625 * 13 12 11 40 40 H 1.08997 * 109.48739 * 172.39791 * 13 12 11 41 41 H 1.08995 * 109.51350 * 302.66269 * 15 14 13 42 42 H 1.08996 * 109.55324 * 182.53028 * 15 14 13 43 43 H 1.09004 * 109.67782 * 350.22812 * 16 11 9 44 44 H 1.09000 * 109.68539 * 110.78372 * 16 11 9 45 45 H 1.09001 * 112.94465 * 69.66597 * 17 2 1 46 46 H 1.09004 * 113.76985 * 205.05423 * 18 17 2 47 47 H 1.08999 * 113.76761 * 336.44569 * 18 17 2 48 48 H 0.97001 * 119.99640 * 179.97438 * 23 22 20 49 49 H 1.09005 * 113.76862 * 221.05744 * 28 19 18 50 50 H 1.08998 * 113.87265 * 89.67443 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1472 -0.0184 -2.3570 6 8 1.8583 1.1582 -2.4117 7 6 2.6492 -0.7291 -3.5875 8 6 2.7002 0.2539 -4.7589 9 6 3.2027 -0.4566 -5.9893 10 8 3.4911 -1.6334 -5.9348 11 7 3.3316 0.2156 -7.1503 12 6 2.9821 1.6421 -7.2425 13 6 4.1617 2.3834 -7.8918 14 8 4.5056 1.7340 -9.1181 15 6 4.9538 0.3856 -8.9607 16 6 3.8196 -0.4567 -8.3648 17 6 2.0400 -0.7211 1.2494 18 6 3.4838 -0.3517 1.6352 19 7 2.8836 0.7105 2.4655 20 6 3.3220 1.9152 2.9470 21 1 2.6369 2.5729 3.4612 22 6 4.6471 2.2911 2.7740 23 7 5.4575 1.5370 2.0620 24 14 5.2800 3.8670 3.5520 25 1 5.9090 3.5551 4.8607 26 1 6.2858 4.4921 2.6560 27 1 4.1486 4.8065 3.7580 28 6 1.6212 -0.0469 2.5685 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2492 -1.6318 -1.1524 33 1 3.6483 -1.1216 -3.3983 34 1 1.9763 -1.5509 -3.8323 35 1 1.7009 0.6460 -4.9480 36 1 3.3729 1.0760 -4.5144 37 1 2.0878 1.7622 -7.8541 38 1 2.8010 2.0409 -6.2444 39 1 5.0191 2.3687 -7.2191 40 1 3.8754 3.4155 -8.0943 41 1 5.8141 0.3636 -8.2918 42 1 5.2371 -0.0203 -9.9318 43 1 4.1935 -1.4485 -8.1103 44 1 3.0082 -0.5440 -9.0874 45 1 1.8528 -1.7946 1.2266 46 1 3.9957 -1.1228 2.2109 47 1 4.0785 0.0245 0.8027 48 1 6.3833 1.7998 1.9409 49 1 0.7287 0.5727 2.4812 50 1 1.5841 -0.7289 3.4179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725269347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:12 Heat of formation + Delta-G solvation = -62.171134 kcal Electronic energy + Delta-G solvation = -29879.850099 eV Core-core repulsion = 25716.077465 eV Total energy + Delta-G solvation = -4163.772634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.70065 -39.68161 -38.64388 -38.02341 -35.10622 -34.59455 -33.14799 -32.14814 -31.69694 -30.18508 -28.37769 -27.54018 -25.92955 -24.76384 -24.28462 -23.69887 -22.37159 -21.46687 -20.08834 -19.37769 -18.69522 -17.79480 -16.87489 -16.74043 -16.44343 -16.38864 -15.98131 -15.85016 -15.57896 -15.39462 -14.88671 -14.81646 -14.23919 -13.95902 -13.80677 -13.66748 -13.18213 -13.09268 -12.90099 -12.74262 -12.51947 -12.39919 -11.99787 -11.90195 -11.83169 -11.72130 -11.30389 -11.26154 -11.15886 -10.93573 -10.78875 -10.64948 -10.60763 -10.28171 -10.04025 -9.88493 -9.72402 -9.56413 -9.33426 -8.96024 -8.79225 -8.64760 -6.82400 -5.74261 -3.05061 2.34223 2.47498 2.92231 3.37157 3.41578 3.45749 3.46648 3.48755 4.20995 4.28794 4.49816 4.52079 4.62092 4.72235 4.75521 4.82164 4.95940 5.01477 5.10036 5.17971 5.22081 5.27524 5.29635 5.36039 5.36753 5.46519 5.51197 5.58354 5.71884 5.77268 5.80139 5.92165 6.02013 6.05704 6.11716 6.29974 6.47340 6.56218 6.63647 6.68633 6.75952 6.91839 6.95830 7.24947 7.34251 7.61502 7.81864 7.84718 8.01967 8.52802 9.08366 9.74879 10.64709 11.43316 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.002394 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.482343 B =11694.423339 C =13056.376676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.168 3.832 3 H 0.101 0.899 4 N -0.718 5.718 5 C 0.513 3.487 6 O -0.544 6.544 7 C -0.125 4.125 8 C -0.123 4.123 9 C 0.520 3.480 10 O -0.539 6.539 11 N -0.620 5.620 12 C 0.070 3.930 13 C 0.046 3.954 14 O -0.381 6.381 15 C 0.047 3.953 16 C 0.076 3.924 17 C -0.151 4.151 18 C 0.170 3.830 19 N -0.610 5.610 20 C -0.223 4.223 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.918 5.918 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.125 3.875 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.397 0.603 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.027 0.973 47 H 0.070 0.930 48 H 0.252 0.748 49 H 0.046 0.954 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 -5.422 -20.947 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.119 0.881 4 N -0.368 5.368 5 C 0.299 3.701 6 O -0.422 6.422 7 C -0.166 4.166 8 C -0.163 4.163 9 C 0.309 3.691 10 O -0.416 6.416 11 N -0.356 5.356 12 C -0.054 4.054 13 C -0.032 4.032 14 O -0.299 6.299 15 C -0.030 4.030 16 C -0.046 4.046 17 C -0.170 4.170 18 C 0.045 3.955 19 N -0.337 5.337 20 C -0.350 4.350 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.565 5.565 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.001 4.001 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.230 0.770 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.075 0.925 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.044 0.956 47 H 0.088 0.912 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.192 -4.849 -21.060 22.481 hybrid contribution 0.634 0.197 0.885 1.106 sum -5.558 -4.652 -20.175 21.437 Atomic orbital electron populations 1.22134 0.96077 1.01210 1.02136 1.20652 0.92671 0.98266 0.82029 0.88128 1.46041 1.66982 1.13861 1.09867 1.20471 0.77646 0.87293 0.84662 1.90700 1.50388 1.15895 1.85208 1.21370 1.04476 0.98803 0.91907 1.21398 1.04203 0.99416 0.91296 1.20864 0.76958 0.87069 0.84184 1.90697 1.50145 1.15996 1.84756 1.48157 1.66519 1.10980 1.09941 1.22613 0.98675 0.80494 1.03576 1.23092 0.96546 0.96919 0.86639 1.87968 1.85858 1.26009 1.30051 1.23005 0.95479 0.82426 1.02108 1.22288 0.97726 0.98119 0.86506 1.23481 1.01436 0.97456 0.94671 1.22196 0.90598 0.88810 0.93912 1.45985 1.11216 1.16521 1.59960 1.19016 0.93409 0.91859 1.30739 0.90309 1.24800 0.95958 0.98867 1.00711 1.69832 1.05276 1.38772 1.42642 0.86162 0.78615 0.82705 0.78713 1.21722 1.21747 1.20555 1.22590 0.91536 0.92913 0.93066 0.92805 0.93142 0.91442 0.76972 0.88102 0.88423 0.88000 0.87808 0.90174 0.87913 0.92203 0.87325 0.92454 0.87580 0.87987 0.90702 0.91781 0.95570 0.91198 0.93764 0.93580 0.94773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.31 37.16 0.35 -1.96 16 2 C 0.17 2.88 2.34 -67.93 -0.16 2.72 16 3 H 0.10 2.24 7.44 -51.93 -0.39 1.86 16 4 N -0.72 -10.42 5.08 -53.81 -0.27 -10.70 16 5 C 0.51 7.73 7.79 -10.98 -0.09 7.65 16 6 O -0.54 -10.19 15.64 5.56 0.09 -10.10 16 7 C -0.13 -1.45 4.99 -27.88 -0.14 -1.59 16 8 C -0.12 -1.31 3.36 -27.88 -0.09 -1.41 16 9 C 0.52 5.86 7.71 -10.98 -0.08 5.78 16 10 O -0.54 -7.65 15.45 5.55 0.09 -7.57 16 11 N -0.62 -5.70 3.01 -172.00 -0.52 -6.22 16 12 C 0.07 0.49 6.57 -3.31 -0.02 0.46 16 13 C 0.05 0.31 7.00 37.53 0.26 0.58 16 14 O -0.38 -3.26 10.74 -35.23 -0.38 -3.64 16 15 C 0.05 0.34 6.99 37.33 0.26 0.60 16 16 C 0.08 0.61 6.64 -3.52 -0.02 0.59 16 17 C -0.15 -2.68 3.53 -89.69 -0.32 -3.00 16 18 C 0.17 3.95 6.97 -2.98 -0.02 3.93 16 19 N -0.61 -15.60 3.55 -177.92 -0.63 -16.23 16 20 C -0.22 -6.31 10.70 -15.05 -0.16 -6.48 16 21 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -27.55 11.51 55.49 0.64 -26.91 16 24 Si 0.91 22.53 29.56 -169.99 -5.02 17.51 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.13 2.51 8.30 -2.98 -0.02 2.48 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.99 6.58 -51.93 -0.34 0.65 16 32 H 0.40 4.64 8.60 -40.82 -0.35 4.29 16 33 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 34 H 0.10 1.01 8.10 -51.93 -0.42 0.58 16 35 H 0.10 1.00 7.96 -51.93 -0.41 0.59 16 36 H 0.10 1.12 7.63 -51.93 -0.40 0.73 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.65 6.05 -51.93 -0.31 0.34 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.90 7.08 -51.93 -0.37 0.53 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.07 1.81 7.31 -51.93 -0.38 1.43 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.05 0.87 6.56 -51.93 -0.34 0.53 16 50 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -36.03 400.67 -8.66 -44.69 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.33 Total: 3.07 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -0.36 Total: 10.06 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.79 Total: -60.05 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.21 Total: -21.31 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.03 -8.66 -44.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725269347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.484 kcal (2) G-P(sol) polarization free energy of solvation -36.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds