Wall clock time and date at job start Sat Apr 11 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46963 * 2 1 4 4 N 1.46490 * 109.47587 * 239.99480 * 2 1 3 5 5 C 1.34773 * 120.00160 * 85.00163 * 4 2 1 6 6 O 1.21281 * 119.99921 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00340 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47186 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47186 * 179.97438 * 8 7 5 10 10 O 1.21287 * 119.99808 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00340 * 180.02562 * 9 8 7 12 12 C 1.47155 * 120.97978 * 359.71289 * 11 9 8 13 13 C 1.53713 * 108.16110 * 129.43413 * 12 11 9 14 14 O 1.42963 * 109.14254 * 52.53835 * 13 12 11 15 15 C 1.42962 * 114.17035 * 297.28526 * 14 13 12 16 16 C 1.47146 * 120.98566 * 180.02562 * 11 9 8 17 17 C 1.53002 * 109.47205 * 119.99147 * 2 1 3 18 18 C 1.53943 * 113.84170 * 201.35735 * 17 2 1 19 19 N 1.47580 * 86.11607 * 90.75462 * 18 17 2 20 20 C 1.36942 * 134.48865 * 204.64321 * 19 18 17 21 21 H 1.08001 * 120.00154 * 173.48015 * 20 19 18 22 22 C 1.38822 * 119.99853 * 353.47866 * 20 19 18 23 23 N 1.31616 * 119.99817 * 5.06680 * 22 20 19 24 24 Si 1.86798 * 119.99687 * 185.06527 * 22 20 19 25 25 H 1.48508 * 109.46852 * 94.98901 * 24 22 20 26 26 H 1.48494 * 109.47029 * 214.98411 * 24 22 20 27 27 H 1.48497 * 109.47536 * 334.99106 * 24 22 20 28 28 C 1.47576 * 91.01740 * 24.63982 * 19 18 17 29 29 H 1.08996 * 109.46742 * 60.00771 * 1 2 3 30 30 H 1.09003 * 109.46487 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46950 * 300.00695 * 1 2 3 32 32 H 0.97004 * 120.00305 * 264.99720 * 4 2 1 33 33 H 1.09000 * 109.47062 * 299.99818 * 7 5 4 34 34 H 1.09002 * 109.46849 * 59.99475 * 7 5 4 35 35 H 1.09000 * 109.47176 * 299.99999 * 8 7 5 36 36 H 1.09002 * 109.47450 * 60.00094 * 8 7 5 37 37 H 1.08999 * 109.68488 * 249.21593 * 12 11 9 38 38 H 1.08997 * 109.68182 * 9.76790 * 12 11 9 39 39 H 1.08993 * 109.65689 * 292.57625 * 13 12 11 40 40 H 1.08997 * 109.48739 * 172.39791 * 13 12 11 41 41 H 1.08995 * 109.51350 * 302.66269 * 15 14 13 42 42 H 1.08996 * 109.55324 * 182.53028 * 15 14 13 43 43 H 1.09004 * 109.67782 * 350.22812 * 16 11 9 44 44 H 1.09000 * 109.68539 * 110.78372 * 16 11 9 45 45 H 1.09001 * 112.94465 * 69.66597 * 17 2 1 46 46 H 1.09004 * 113.76985 * 205.05423 * 18 17 2 47 47 H 1.08999 * 113.76761 * 336.44569 * 18 17 2 48 48 H 0.97001 * 119.99640 * 179.97438 * 23 22 20 49 49 H 1.09005 * 113.76862 * 221.05744 * 28 19 18 50 50 H 1.08998 * 113.87265 * 89.67443 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1472 -0.0184 -2.3570 6 8 1.8583 1.1582 -2.4117 7 6 2.6492 -0.7291 -3.5875 8 6 2.7002 0.2539 -4.7589 9 6 3.2027 -0.4566 -5.9893 10 8 3.4911 -1.6334 -5.9348 11 7 3.3316 0.2156 -7.1503 12 6 2.9821 1.6421 -7.2425 13 6 4.1617 2.3834 -7.8918 14 8 4.5056 1.7340 -9.1181 15 6 4.9538 0.3856 -8.9607 16 6 3.8196 -0.4567 -8.3648 17 6 2.0400 -0.7211 1.2494 18 6 3.4838 -0.3517 1.6352 19 7 2.8836 0.7105 2.4655 20 6 3.3220 1.9152 2.9470 21 1 2.6369 2.5729 3.4612 22 6 4.6471 2.2911 2.7740 23 7 5.4575 1.5370 2.0620 24 14 5.2800 3.8670 3.5520 25 1 5.9090 3.5551 4.8607 26 1 6.2858 4.4921 2.6560 27 1 4.1486 4.8065 3.7580 28 6 1.6212 -0.0469 2.5685 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2492 -1.6318 -1.1524 33 1 3.6483 -1.1216 -3.3983 34 1 1.9763 -1.5509 -3.8323 35 1 1.7009 0.6460 -4.9480 36 1 3.3729 1.0760 -4.5144 37 1 2.0878 1.7622 -7.8541 38 1 2.8010 2.0409 -6.2444 39 1 5.0191 2.3687 -7.2191 40 1 3.8754 3.4155 -8.0943 41 1 5.8141 0.3636 -8.2918 42 1 5.2371 -0.0203 -9.9318 43 1 4.1935 -1.4485 -8.1103 44 1 3.0082 -0.5440 -9.0874 45 1 1.8528 -1.7946 1.2266 46 1 3.9957 -1.1228 2.2109 47 1 4.0785 0.0245 0.8027 48 1 6.3833 1.7998 1.9409 49 1 0.7287 0.5727 2.4812 50 1 1.5841 -0.7289 3.4179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725269347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:10 Heat of formation + Delta-G solvation = -88.473999 kcal Electronic energy + Delta-G solvation = -29880.990676 eV Core-core repulsion = 25716.077465 eV Total energy + Delta-G solvation = -4164.913212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.53201 -40.94041 -39.74521 -39.26610 -36.05069 -35.85372 -34.22164 -34.02717 -32.40414 -31.50203 -29.44215 -29.09552 -27.00090 -26.26208 -25.48516 -24.92175 -23.43277 -22.72381 -21.32821 -20.30512 -20.06005 -18.80805 -18.65478 -17.69847 -17.45863 -17.31449 -17.13775 -16.90131 -16.63582 -16.35114 -16.05175 -15.76305 -15.72434 -15.50823 -14.87022 -14.74636 -14.56459 -14.38712 -14.19274 -13.83318 -13.58621 -13.38175 -13.24164 -13.16716 -13.04216 -12.84552 -12.67847 -12.46747 -12.39073 -12.38281 -12.20170 -11.94502 -11.78280 -11.73721 -11.43451 -11.28047 -11.26250 -10.91136 -10.86082 -10.76863 -9.98268 -9.67174 -8.86786 -7.91143 -5.21698 1.42418 1.44083 1.47220 1.52811 1.69771 1.74102 2.30829 2.47387 2.83411 3.29601 3.36583 3.48707 3.69419 3.71017 3.77894 3.93396 3.98122 4.04752 4.07075 4.09105 4.20367 4.25544 4.44044 4.46615 4.54332 4.60993 4.64521 4.69634 4.73514 4.78688 4.80653 4.83147 4.85742 4.89586 4.90213 4.91961 5.03690 5.22914 5.27673 5.33235 5.34025 5.54367 5.58622 5.73635 5.96856 6.06557 6.18528 6.65875 6.93593 6.99166 7.35753 7.62766 8.59631 9.26275 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.002394 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.482343 B =11694.423339 C =13056.376676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.174 3.826 3 H 0.043 0.957 4 N -0.710 5.710 5 C 0.511 3.489 6 O -0.585 6.585 7 C -0.114 4.114 8 C -0.118 4.118 9 C 0.520 3.480 10 O -0.573 6.573 11 N -0.619 5.619 12 C 0.068 3.932 13 C 0.043 3.957 14 O -0.394 6.394 15 C 0.049 3.951 16 C 0.074 3.926 17 C -0.117 4.117 18 C 0.166 3.834 19 N -0.643 5.643 20 C -0.231 4.231 21 H 0.081 0.919 22 C -0.069 4.069 23 N -0.951 5.951 24 Si 0.972 3.028 25 H -0.286 1.286 26 H -0.296 1.296 27 H -0.268 1.268 28 C 0.125 3.875 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.414 0.586 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.053 0.947 40 H 0.129 0.871 41 H 0.050 0.950 42 H 0.128 0.872 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.111 0.889 46 H 0.018 0.982 47 H 0.031 0.969 48 H 0.246 0.754 49 H 0.059 0.941 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.046 -6.121 -21.538 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.069 3.931 3 H 0.061 0.939 4 N -0.362 5.362 5 C 0.298 3.702 6 O -0.465 6.465 7 C -0.154 4.154 8 C -0.158 4.158 9 C 0.310 3.690 10 O -0.453 6.453 11 N -0.353 5.353 12 C -0.055 4.055 13 C -0.034 4.034 14 O -0.312 6.312 15 C -0.028 4.028 16 C -0.048 4.048 17 C -0.136 4.136 18 C 0.040 3.960 19 N -0.370 5.370 20 C -0.359 4.359 21 H 0.099 0.901 22 C -0.262 4.262 23 N -0.600 5.600 24 Si 0.800 3.200 25 H -0.214 1.214 26 H -0.223 1.223 27 H -0.192 1.192 28 C 0.000 4.000 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.250 0.750 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.071 0.929 40 H 0.147 0.853 41 H 0.068 0.932 42 H 0.146 0.854 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.129 0.871 46 H 0.036 0.964 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.077 0.923 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.918 -5.566 -21.657 23.721 hybrid contribution 1.123 0.420 1.046 1.591 sum -6.795 -5.146 -20.611 22.304 Atomic orbital electron populations 1.22025 0.93437 1.03172 1.01810 1.20364 0.94513 0.95390 0.82816 0.93907 1.45935 1.66622 1.14600 1.08996 1.21053 0.76745 0.86860 0.85511 1.90681 1.52179 1.17776 1.85892 1.21311 1.04625 0.99070 0.90410 1.21346 1.04687 0.98946 0.90849 1.20873 0.76692 0.86642 0.84772 1.90679 1.51917 1.17330 1.85352 1.48264 1.65523 1.11856 1.09702 1.22779 0.99287 0.79155 1.04252 1.23212 0.96212 0.97841 0.86111 1.87953 1.85918 1.26523 1.30846 1.23074 0.94704 0.81915 1.03080 1.22386 0.98447 0.97759 0.86190 1.23218 0.96558 0.99947 0.93913 1.22124 0.93229 0.88122 0.92509 1.46378 1.13639 1.16587 1.60439 1.19398 0.93627 0.93369 1.29540 0.90128 1.25611 0.96457 1.02297 1.01849 1.70019 1.05037 1.40573 1.44364 0.85150 0.77976 0.79325 0.77516 1.21357 1.22326 1.19244 1.22822 0.89749 0.92751 0.94685 0.93510 0.89906 0.91467 0.74987 0.88083 0.86445 0.86967 0.88285 0.88782 0.87416 0.92882 0.85345 0.93181 0.85416 0.88986 0.89530 0.87109 0.96446 0.95007 0.94551 0.92296 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.31 71.98 0.67 -3.26 16 2 C 0.17 5.82 2.34 44.99 0.11 5.93 16 3 H 0.04 1.96 7.44 -2.38 -0.02 1.95 16 4 N -0.71 -19.84 5.08 -442.54 -2.25 -22.09 16 5 C 0.51 15.22 7.79 87.66 0.68 15.91 16 6 O -0.58 -22.28 15.64 -3.03 -0.05 -22.32 16 7 C -0.11 -2.55 4.99 29.85 0.15 -2.40 16 8 C -0.12 -2.46 3.36 29.85 0.10 -2.36 16 9 C 0.52 11.44 7.71 87.66 0.68 12.12 16 10 O -0.57 -16.07 15.45 -3.05 -0.05 -16.11 16 11 N -0.62 -10.85 3.01 -816.47 -2.46 -13.31 16 12 C 0.07 0.86 6.57 86.49 0.57 1.43 16 13 C 0.04 0.55 7.00 72.22 0.51 1.05 16 14 O -0.39 -6.22 10.74 -148.98 -1.60 -7.82 16 15 C 0.05 0.65 6.99 72.09 0.50 1.16 16 16 C 0.07 1.13 6.64 86.37 0.57 1.70 16 17 C -0.12 -3.94 3.53 -10.13 -0.04 -3.97 16 18 C 0.17 7.77 6.97 86.48 0.60 8.37 16 19 N -0.64 -33.13 3.55 -716.82 -2.55 -35.67 16 20 C -0.23 -13.28 10.70 84.04 0.90 -12.38 16 21 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 22 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 23 N -0.95 -59.05 11.51 21.65 0.25 -58.80 16 24 Si 0.97 47.28 29.56 68.60 2.03 49.30 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 28 C 0.12 4.75 8.30 86.48 0.72 5.47 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.81 6.58 -2.39 -0.02 1.79 16 32 H 0.41 8.75 8.60 -92.70 -0.80 7.95 16 33 H 0.10 2.30 8.10 -2.39 -0.02 2.28 16 34 H 0.12 2.19 8.10 -2.39 -0.02 2.17 16 35 H 0.11 2.09 7.96 -2.39 -0.02 2.08 16 36 H 0.10 2.16 7.63 -2.39 -0.02 2.14 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.11 1.27 6.05 -2.39 -0.01 1.25 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 1.60 7.08 -2.38 -0.02 1.59 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.11 2.80 8.14 -2.39 -0.02 2.79 16 46 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.03 1.72 7.31 -2.39 -0.02 1.70 16 48 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 49 H 0.06 2.10 6.56 -2.38 -0.02 2.08 16 50 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -81.08 400.67 0.65 -80.43 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.14 Total: 21.25 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: 7.18 Total: 25.16 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -7.01 Total: -129.88 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -1.69 Total: -46.26 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -81.08 0.65 -80.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725269347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.046 kcal (2) G-P(sol) polarization free energy of solvation -81.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds