Wall clock time and date at job start Sat Apr 11 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46990 * 2 1 4 4 C 1.53000 * 109.46593 * 240.00153 * 2 1 3 5 5 C 1.53001 * 109.46617 * 175.00016 * 4 2 1 6 6 C 1.53002 * 109.47127 * 179.97438 * 5 4 2 7 7 N 1.46896 * 109.47457 * 179.97438 * 6 5 4 8 8 C 1.46901 * 111.00184 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47186 * 180.02562 * 8 7 6 10 10 O 1.21296 * 119.99952 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00112 * 180.02562 * 9 8 7 12 12 C 1.37096 * 120.00218 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99812 * 359.97438 * 12 11 9 14 14 C 1.38944 * 120.00226 * 179.97438 * 12 11 9 15 15 N 1.31406 * 119.99766 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47277 * 60.00033 * 16 14 12 18 18 H 1.48501 * 109.47479 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47465 * 300.00019 * 16 14 12 20 20 N 1.46497 * 109.47219 * 120.00288 * 2 1 3 21 21 C 1.34781 * 119.99793 * 275.00189 * 20 2 1 22 22 O 1.21609 * 120.00105 * 359.97438 * 21 20 2 23 23 C 1.47104 * 119.99911 * 180.02562 * 21 20 2 24 24 C 1.32081 * 118.87651 * 179.97438 * 23 21 20 25 25 C 1.50274 * 122.57596 * 180.02562 * 24 23 21 26 26 O 1.42892 * 110.09649 * 344.64088 * 25 24 23 27 27 C 1.43274 * 113.09723 * 50.52179 * 26 25 24 28 28 C 1.50418 * 118.87335 * 0.22590 * 23 21 20 29 29 H 1.09004 * 109.46754 * 299.99848 * 1 2 3 30 30 H 1.08997 * 109.47183 * 59.99746 * 1 2 3 31 31 H 1.08996 * 109.46990 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47154 * 294.99878 * 4 2 1 33 33 H 1.08995 * 109.47516 * 55.00503 * 4 2 1 34 34 H 1.08999 * 109.47246 * 299.99806 * 5 4 2 35 35 H 1.09001 * 109.47309 * 60.00485 * 5 4 2 36 36 H 1.09000 * 109.47638 * 300.00589 * 6 5 4 37 37 H 1.09009 * 109.46544 * 60.00176 * 6 5 4 38 38 H 1.00896 * 111.00205 * 303.96003 * 7 6 5 39 39 H 1.08999 * 109.46899 * 299.99771 * 8 7 6 40 40 H 1.08989 * 109.47213 * 60.00351 * 8 7 6 41 41 H 0.97003 * 119.99617 * 359.97438 * 11 9 8 42 42 H 0.97005 * 120.00122 * 180.02562 * 15 14 12 43 43 H 0.97000 * 120.00109 * 94.99227 * 20 2 1 44 44 H 1.08002 * 118.71405 * 0.35187 * 24 23 21 45 45 H 1.09004 * 109.36042 * 104.82669 * 25 24 23 46 46 H 1.08997 * 109.36962 * 224.44278 * 25 24 23 47 47 H 1.08995 * 109.63703 * 50.86361 * 27 26 25 48 48 H 1.09002 * 109.63129 * 171.47279 * 27 26 25 49 49 H 1.09002 * 109.59879 * 43.43043 * 28 23 21 50 50 H 1.08999 * 109.25703 * 283.52430 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0748 -1.3350 -2.5627 7 7 5.5388 -1.2309 -2.6250 8 6 6.0650 -1.9136 -3.8145 9 6 7.5664 -1.7863 -3.8437 10 8 8.1414 -1.1854 -2.9608 11 7 8.2701 -2.3391 -4.8515 12 6 9.6358 -2.2228 -4.8785 13 1 10.1478 -1.6878 -4.0923 14 6 10.3613 -2.7932 -5.9171 15 7 9.7384 -3.4446 -6.8734 16 14 12.2221 -2.6341 -5.9542 17 1 12.7964 -3.2538 -4.7329 18 1 12.7543 -3.3249 -7.1561 19 1 12.5953 -1.1975 -6.0026 20 7 2.0184 -0.6906 1.1961 21 6 2.1471 -0.0183 2.3571 22 8 1.8583 1.1617 2.4117 23 6 2.6380 -0.7116 3.5581 24 6 2.7560 -0.0312 4.6840 25 6 3.2490 -0.6557 5.9588 26 8 3.2104 -2.0803 5.8547 27 6 3.8432 -2.5745 4.6681 28 6 2.9938 -2.1699 3.4604 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 3.8532 0.4370 -1.3574 35 1 3.9994 -1.0729 -0.4261 36 1 3.7864 -2.3853 -2.5188 37 1 3.6402 -0.8758 -3.4506 38 1 5.8340 -0.2664 -2.6018 39 1 5.7909 -2.9680 -3.7792 40 1 5.6439 -1.4584 -4.7107 41 1 7.8102 -2.8193 -5.5578 42 1 10.2449 -3.8432 -7.5984 43 1 2.2490 -1.6318 1.1525 44 1 2.4826 1.0136 4.6899 45 1 4.2738 -0.3346 6.1457 46 1 2.6156 -0.3364 6.7863 47 1 4.8390 -2.1411 4.5763 48 1 3.9163 -3.6609 4.7174 49 1 3.5561 -2.3484 2.5438 50 1 2.0794 -2.7629 3.4463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725382183.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:17 Heat of formation + Delta-G solvation = -119.233167 kcal Electronic energy + Delta-G solvation = -28587.412065 eV Core-core repulsion = 24421.165036 eV Total energy + Delta-G solvation = -4166.247029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.64111 -39.21105 -38.32765 -37.15344 -35.53404 -34.23697 -33.89231 -32.53189 -31.50632 -31.21597 -30.48159 -27.34453 -26.56973 -25.15167 -24.31159 -23.52585 -22.26317 -21.45091 -20.92792 -19.21847 -18.89634 -17.97179 -17.88580 -16.94948 -16.44180 -16.21013 -15.75320 -15.64138 -15.54654 -15.06051 -14.78872 -14.51270 -14.38552 -14.12441 -14.00182 -13.85546 -13.64463 -13.33979 -13.25011 -13.05475 -12.91948 -12.66901 -12.41159 -12.03665 -11.99287 -11.68635 -11.57399 -11.45305 -11.35057 -11.24948 -11.05413 -10.94051 -10.78477 -10.51296 -10.44870 -10.21982 -9.91938 -9.57253 -9.50819 -9.32354 -8.46989 -8.06399 -7.96611 -6.42381 -3.83275 0.96065 2.85594 2.94978 3.19588 3.25190 3.29696 3.42994 3.90170 4.03433 4.18782 4.23728 4.27677 4.40234 4.55017 4.73671 4.76623 4.80708 4.82846 4.93072 5.02179 5.08759 5.14900 5.15557 5.23384 5.25275 5.28383 5.32207 5.37196 5.43483 5.49886 5.56937 5.64799 5.72019 5.79183 5.86165 5.90399 5.97396 6.03512 6.04585 6.15775 6.25860 6.27362 6.60837 7.20779 7.23135 7.54290 7.65752 7.93334 8.05486 8.60679 9.17079 9.53546 10.05194 10.75281 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.001811 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.558039 B =15461.498729 C =17074.727244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.090 0.910 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.584 6.584 11 N -0.564 5.564 12 C -0.300 4.300 13 H 0.102 0.898 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.274 1.274 20 N -0.717 5.717 21 C 0.554 3.446 22 O -0.544 6.544 23 C -0.168 4.168 24 C -0.112 4.112 25 C 0.083 3.917 26 O -0.378 6.378 27 C 0.059 3.941 28 C -0.121 4.121 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.349 0.651 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.401 0.599 44 H 0.136 0.864 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.060 0.940 48 H 0.104 0.896 49 H 0.089 0.911 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.298 1.716 17.702 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.108 0.892 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.071 4.071 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.225 3.775 10 O -0.468 6.468 11 N -0.200 5.200 12 C -0.429 4.429 13 H 0.120 0.880 14 C -0.180 4.180 15 N -0.543 5.543 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 N -0.369 5.369 21 C 0.342 3.658 22 O -0.423 6.423 23 C -0.171 4.171 24 C -0.132 4.132 25 C 0.007 3.993 26 O -0.296 6.296 27 C -0.018 4.018 28 C -0.158 4.158 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.168 0.832 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.236 0.764 44 H 0.153 0.847 45 H 0.093 0.907 46 H 0.130 0.870 47 H 0.079 0.921 48 H 0.122 0.878 49 H 0.108 0.892 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.011 2.203 18.668 27.455 hybrid contribution 0.560 0.060 -1.677 1.769 sum -19.451 2.263 16.991 25.926 Atomic orbital electron populations 1.22175 0.95216 1.02135 1.02591 1.21020 0.93859 0.97759 0.83693 0.89240 1.21880 0.96317 1.01142 0.97064 1.21561 0.93960 1.01104 0.98895 1.21974 0.88307 1.00466 0.96306 1.60076 1.08069 1.21454 1.40713 1.21664 0.95002 1.00089 0.91436 1.19831 0.88131 0.85004 0.84491 1.90522 1.71164 1.46291 1.38805 1.41861 1.07412 1.48489 1.22276 1.19655 0.81549 1.32877 1.08866 0.87987 1.25265 1.00725 0.96560 0.95427 1.69603 1.36799 1.35786 1.12159 0.85909 0.82088 0.78575 0.77592 1.19874 1.20978 1.19913 1.46012 1.67148 1.14137 1.09583 1.18393 0.77402 0.86497 0.83486 1.90782 1.50691 1.15661 1.85122 1.20871 1.05559 0.96551 0.94115 1.23729 0.93972 1.01412 0.94118 1.21611 1.01407 0.80960 0.95304 1.88141 1.79324 1.20050 1.42089 1.22674 0.95079 1.00319 0.83742 1.21087 1.01772 0.92511 1.00446 0.92180 0.91482 0.92439 0.91157 0.90192 0.91864 0.90946 0.91233 0.95650 0.83221 0.89679 0.93950 0.77459 0.91823 0.76357 0.84666 0.90681 0.86977 0.92133 0.87820 0.89249 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 2 C 0.14 1.17 2.57 -67.93 -0.17 1.00 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 4 C -0.13 -0.91 4.75 -26.73 -0.13 -1.04 16 5 C -0.12 -1.14 5.36 -26.73 -0.14 -1.29 16 6 C 0.06 0.68 5.68 -3.83 -0.02 0.66 16 7 N -0.67 -10.78 6.13 -115.06 -0.70 -11.49 16 8 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 9 C 0.44 10.47 7.82 -10.98 -0.09 10.38 16 10 O -0.58 -16.01 15.78 5.54 0.09 -15.92 16 11 N -0.56 -14.36 5.29 -10.96 -0.06 -14.41 16 12 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 13 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 16 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 N -0.72 -5.96 4.48 -54.99 -0.25 -6.21 16 21 C 0.55 5.94 7.69 -12.66 -0.10 5.84 16 22 O -0.54 -7.72 15.72 5.27 0.08 -7.63 16 23 C -0.17 -1.49 5.86 -103.09 -0.60 -2.09 16 24 C -0.11 -0.94 9.58 -36.44 -0.35 -1.29 16 25 C 0.08 0.55 7.04 35.80 0.25 0.80 16 26 O -0.38 -3.15 10.83 -35.23 -0.38 -3.53 16 27 C 0.06 0.39 6.88 37.20 0.26 0.65 16 28 C -0.12 -0.79 5.27 -27.98 -0.15 -0.94 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.28 8.14 -51.92 -0.42 -0.15 16 38 H 0.35 5.88 8.43 -39.29 -0.33 5.55 16 39 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.04 0.68 8.14 -51.94 -0.42 0.26 16 41 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.40 2.53 6.92 -40.82 -0.28 2.25 16 44 H 0.14 1.19 7.29 -52.49 -0.38 0.81 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 48 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.09 0.50 7.33 -51.93 -0.38 0.12 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 412.24 15.07 6.21 6.21 Total: -1.00 -34.44 412.24 -8.81 -43.26 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -8.35 Total: 12.85 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.16 Total: 4.63 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.28 Total: -55.91 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.21 Total: -27.09 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.44 -8.81 -43.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725382183.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.975 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds