Wall clock time and date at job start Sat Apr 11 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47374 * 2 1 4 4 C 1.50700 * 109.47157 * 119.99902 * 2 1 3 5 5 O 1.21285 * 120.00149 * 119.99749 * 4 2 1 6 6 N 1.34772 * 119.99930 * 300.00109 * 4 2 1 7 7 C 1.46499 * 120.00091 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.47512 * 174.86694 * 7 6 4 9 9 N 1.46903 * 115.54620 * 325.03272 * 8 7 6 10 10 C 1.46898 * 110.99861 * 279.55899 * 9 8 7 11 11 C 1.50704 * 109.46669 * 174.70480 * 10 9 8 12 12 O 1.21292 * 120.00507 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99787 * 179.97438 * 11 10 9 14 14 C 1.37101 * 119.99899 * 180.02562 * 13 11 10 15 15 H 1.07992 * 120.00208 * 0.02562 * 14 13 11 16 16 C 1.38958 * 119.99640 * 180.02562 * 14 13 11 17 17 N 1.31411 * 119.99982 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99765 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47236 * 59.99703 * 18 16 14 20 20 H 1.48493 * 109.47004 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47233 * 300.00201 * 18 16 14 22 22 C 1.52998 * 117.51981 * 110.73324 * 8 7 6 23 23 C 1.52997 * 60.00187 * 107.48304 * 22 8 7 24 24 C 1.53001 * 109.47375 * 239.99999 * 2 1 3 25 25 H 1.08999 * 110.27401 * 300.64265 * 24 2 1 26 26 C 1.54952 * 110.30745 * 62.83468 * 24 2 1 27 27 C 1.55306 * 100.94036 * 155.36427 * 26 24 2 28 28 C 1.54382 * 102.25134 * 325.86438 * 27 26 24 29 29 O 1.43243 * 107.59036 * 21.36255 * 28 27 26 30 30 H 1.08996 * 109.47374 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46862 * 300.00604 * 1 2 3 32 32 H 1.09004 * 109.46753 * 59.99561 * 1 2 3 33 33 H 0.97007 * 120.00257 * 359.97438 * 6 4 2 34 34 H 1.09003 * 109.47393 * 54.86673 * 7 6 4 35 35 H 1.09005 * 109.46954 * 294.86472 * 7 6 4 36 36 H 1.00903 * 110.99449 * 155.60365 * 9 8 7 37 37 H 1.09002 * 109.47298 * 294.70355 * 10 9 8 38 38 H 1.08995 * 109.47217 * 54.70672 * 10 9 8 39 39 H 0.97004 * 120.00244 * 359.97438 * 13 11 10 40 40 H 0.97003 * 119.99525 * 180.02562 * 17 16 14 41 41 H 1.08997 * 117.50127 * 214.97344 * 22 8 7 42 42 H 1.09003 * 117.49645 * 359.97438 * 22 8 7 43 43 H 1.09002 * 117.49899 * 252.51271 * 23 22 8 44 44 H 1.08995 * 117.52050 * 107.47605 * 23 22 8 45 45 H 1.08999 * 111.12175 * 273.28201 * 26 24 2 46 46 H 1.08991 * 111.12622 * 37.44429 * 26 24 2 47 47 H 1.08995 * 110.84848 * 207.67680 * 27 26 24 48 48 H 1.08997 * 111.02228 * 84.13149 * 27 26 24 49 49 H 1.08993 * 109.83262 * 261.84465 * 28 27 26 50 50 H 1.09004 * 109.83109 * 140.86748 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4545 7 6 2.1946 -0.9408 3.6507 8 6 1.7928 -0.1489 4.8967 9 7 1.7919 1.3124 4.7456 10 6 3.1517 1.8549 4.8657 11 6 3.1297 3.3338 4.5771 12 8 2.0841 3.8821 4.2992 13 7 4.2718 4.0475 4.6288 14 6 4.2517 5.3931 4.3668 15 1 3.3208 5.8812 4.1194 16 6 5.4294 6.1288 4.4196 17 7 6.5622 5.5349 4.7212 18 14 5.4022 7.9620 4.0619 19 1 4.5099 8.6430 5.0343 20 1 6.7767 8.5106 4.1840 21 1 4.8982 8.1901 2.6838 22 6 0.7357 -0.7648 5.8154 23 6 2.1997 -0.7182 6.2573 24 6 2.0401 -0.7212 -1.2492 25 1 1.6747 -1.7480 -1.2682 26 6 1.5938 0.0344 -2.5263 27 6 2.6825 -0.4231 -3.5350 28 6 3.9301 -0.5515 -2.6347 29 8 3.4759 -0.7023 -1.2846 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.1493 0.5390 2.5435 34 1 3.2807 -1.0216 3.6061 35 1 1.7577 -1.9383 3.6977 36 1 1.1699 1.7444 5.4124 37 1 3.5217 1.6875 5.8773 38 1 3.8066 1.3551 4.1520 39 1 5.1079 3.6093 4.8522 40 1 7.3842 6.0486 4.7584 41 1 0.0395 -0.0858 6.3077 42 1 0.3259 -1.7343 5.5320 43 1 2.7533 -1.6571 6.2648 44 1 2.4671 -0.0085 7.0401 45 1 0.6023 -0.2862 -2.8461 46 1 1.6262 1.1134 -2.3759 47 1 2.8372 0.3305 -4.3071 48 1 2.4245 -1.3843 -3.9796 49 1 4.5422 0.3462 -2.7209 50 1 4.5103 -1.4259 -2.9294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733255197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:53 Heat of formation + Delta-G solvation = -122.252538 kcal Electronic energy + Delta-G solvation = -30216.378130 eV Core-core repulsion = 26050.000171 eV Total energy + Delta-G solvation = -4166.377959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.28803 -40.44978 -39.83043 -39.08751 -35.99744 -35.30168 -34.74894 -33.89731 -33.19016 -32.84461 -29.23461 -28.31933 -27.89410 -25.90583 -25.35119 -23.40487 -22.87717 -22.17251 -21.19434 -20.96327 -20.43752 -19.89207 -18.33681 -17.90168 -17.39415 -17.36546 -16.98087 -16.62993 -16.43762 -16.29317 -15.94591 -15.81527 -15.60494 -15.34270 -14.85386 -14.62976 -14.27766 -14.14272 -14.10962 -13.90239 -13.56551 -13.49802 -13.25775 -13.16529 -12.92524 -12.81283 -12.55968 -12.51344 -12.43301 -12.37173 -12.13320 -12.05671 -11.96616 -11.82085 -11.65098 -11.49101 -11.10113 -10.66441 -10.43100 -10.31269 -10.01942 -9.92125 -9.39420 -8.46528 -5.95649 1.39619 1.41343 1.52516 1.73659 2.04481 2.17708 2.29676 2.68492 2.89154 2.92750 3.20641 3.42739 3.54076 3.65539 3.73211 3.82828 3.89791 3.96412 3.99826 4.13096 4.18893 4.29804 4.36378 4.39680 4.48125 4.50067 4.54560 4.66428 4.69680 4.74899 4.76390 4.82278 4.84893 4.88297 4.92866 4.98979 5.00219 5.09181 5.20103 5.24109 5.30209 5.40300 5.52538 5.84246 6.05072 6.19920 6.34000 6.58620 6.68762 7.11747 7.35632 7.55407 8.09576 8.70743 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007818 B = 0.003297 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.564164 B = 8491.646780 C =11038.870417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.095 0.905 4 C 0.511 3.489 5 O -0.578 6.578 6 N -0.708 5.708 7 C 0.173 3.827 8 C 0.020 3.980 9 N -0.633 5.633 10 C 0.072 3.928 11 C 0.442 3.558 12 O -0.615 6.615 13 N -0.574 5.574 14 C -0.333 4.333 15 H 0.082 0.918 16 C -0.014 4.014 17 N -0.922 5.922 18 Si 0.993 3.007 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.271 1.271 22 C -0.146 4.146 23 C -0.198 4.198 24 C 0.097 3.903 25 H 0.066 0.934 26 C -0.145 4.145 27 C -0.147 4.147 28 C 0.035 3.965 29 O -0.404 6.404 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.415 0.585 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.354 0.646 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.394 0.606 40 H 0.277 0.723 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.065 0.935 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.863 -14.971 -8.651 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 H 0.113 0.887 4 C 0.298 3.702 5 O -0.458 6.458 6 N -0.360 5.360 7 C 0.048 3.952 8 C -0.072 4.072 9 N -0.264 5.264 10 C -0.061 4.061 11 C 0.229 3.771 12 O -0.502 6.502 13 N -0.211 5.211 14 C -0.463 4.463 15 H 0.100 0.900 16 C -0.214 4.214 17 N -0.563 5.563 18 Si 0.817 3.183 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.184 4.184 23 C -0.238 4.238 24 C 0.039 3.961 25 H 0.084 0.916 26 C -0.182 4.182 27 C -0.185 4.185 28 C -0.041 4.041 29 O -0.324 6.324 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.252 0.748 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.174 0.826 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.227 0.773 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.129 0.871 46 H 0.101 0.899 47 H 0.117 0.883 48 H 0.106 0.894 49 H 0.083 0.917 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.720 -15.240 -9.392 21.397 hybrid contribution 0.973 1.022 1.045 1.756 sum -10.747 -14.218 -8.347 19.680 Atomic orbital electron populations 1.21746 0.89403 1.03482 1.04591 1.21559 0.99595 1.00445 0.91570 0.88653 1.20976 0.79491 0.84229 0.85534 1.90670 1.39258 1.28465 1.87387 1.45852 1.53271 1.32314 1.04550 1.20656 0.98269 0.94398 0.81868 1.21818 1.07305 0.87174 0.90907 1.59592 1.07547 1.01543 1.57749 1.21403 0.92330 0.90951 1.01380 1.20719 0.83813 0.89727 0.82859 1.90482 1.31992 1.73123 1.54557 1.41946 1.08975 1.08514 1.61715 1.19655 0.95612 0.84735 1.46277 0.89973 1.26071 0.94035 1.04750 0.96518 1.69682 0.99321 1.38744 1.48582 0.84985 0.77635 0.76767 0.78948 1.19443 1.19698 1.19640 1.23411 0.91829 1.03050 1.00088 1.23583 0.98974 1.04051 0.97180 1.22830 0.80698 0.98427 0.94096 0.91565 1.23358 1.00812 1.01150 0.92873 1.23109 0.93434 1.03612 0.98314 1.23318 0.97801 1.01245 0.81765 1.88558 1.21604 1.94690 1.27526 0.91446 0.91016 0.88976 0.74751 0.93328 0.90200 0.82605 0.91603 0.89581 0.77288 0.91361 0.87602 0.86318 0.87154 0.88579 0.87121 0.89902 0.88262 0.89390 0.91682 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.90 71.98 0.64 -1.53 16 2 C -0.11 -2.65 2.50 -11.54 -0.03 -2.67 16 3 H 0.10 2.46 8.14 -2.39 -0.02 2.45 16 4 C 0.51 15.54 7.03 87.66 0.62 16.15 16 5 O -0.58 -21.94 15.39 13.01 0.20 -21.74 16 6 N -0.71 -19.24 5.29 -463.05 -2.45 -21.69 16 7 C 0.17 4.38 5.73 86.38 0.50 4.88 16 8 C 0.02 0.46 2.12 3.53 0.01 0.47 16 9 N -0.63 -18.26 5.16 -474.14 -2.45 -20.71 16 10 C 0.07 2.46 5.95 85.56 0.51 2.97 16 11 C 0.44 20.69 7.83 87.66 0.69 21.38 16 12 O -0.62 -32.71 15.89 -3.07 -0.05 -32.75 16 13 N -0.57 -29.67 5.29 -306.98 -1.62 -31.30 16 14 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 15 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 16 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 17 N -0.92 -50.54 13.05 21.67 0.28 -50.26 16 18 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 C -0.15 -2.41 9.87 30.59 0.30 -2.11 16 23 C -0.20 -3.66 9.67 30.59 0.30 -3.36 16 24 C 0.10 2.31 2.46 31.26 0.08 2.39 16 25 H 0.07 1.63 8.13 -2.39 -0.02 1.61 16 26 C -0.14 -2.25 5.55 32.05 0.18 -2.07 16 27 C -0.15 -2.18 7.02 31.86 0.22 -1.96 16 28 C 0.04 0.78 7.79 72.45 0.56 1.35 16 29 O -0.40 -12.52 10.09 -132.93 -1.34 -13.87 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.14 7.57 -2.38 -0.02 1.13 16 32 H 0.09 1.07 7.28 -2.38 -0.02 1.06 16 33 H 0.41 11.04 7.17 -92.70 -0.66 10.37 16 34 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 35 H 0.08 1.82 7.91 -2.38 -0.02 1.80 16 36 H 0.35 10.23 8.39 -89.69 -0.75 9.48 16 37 H 0.07 2.03 7.64 -2.39 -0.02 2.01 16 38 H 0.09 3.01 8.00 -2.39 -0.02 2.99 16 39 H 0.39 19.72 7.90 -92.71 -0.73 18.99 16 40 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.11 1.64 8.07 -2.39 -0.02 1.62 16 42 H 0.12 1.58 8.05 -2.39 -0.02 1.56 16 43 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.10 1.85 7.88 -2.39 -0.02 1.83 16 45 H 0.11 1.13 8.05 -2.39 -0.02 1.11 16 46 H 0.08 1.30 8.06 -2.39 -0.02 1.28 16 47 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -74.33 409.31 -0.73 -75.07 By element: Atomic # 1 Polarization: 55.97 SS G_CDS: -1.18 Total: 54.78 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 5.85 Total: 17.48 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.24 Total: -123.96 kcal Atomic # 8 Polarization: -67.17 SS G_CDS: -1.19 Total: -68.36 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -74.33 -0.73 -75.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733255197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.187 kcal (2) G-P(sol) polarization free energy of solvation -74.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds