Wall clock time and date at job start Sat Apr 11 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47576 * 2 1 4 4 C 1.50704 * 109.47183 * 240.00142 * 2 1 3 5 5 O 1.21279 * 119.99940 * 240.00368 * 4 2 1 6 6 N 1.34781 * 119.99987 * 60.00094 * 4 2 1 7 7 C 1.46499 * 120.00114 * 180.02562 * 6 4 2 8 8 C 1.52989 * 109.47351 * 174.94819 * 7 6 4 9 9 H 1.09002 * 109.51173 * 174.52301 * 8 7 6 10 10 C 1.53096 * 109.54433 * 294.62876 * 8 7 6 11 11 O 1.43022 * 109.26133 * 176.80048 * 10 8 7 12 12 C 1.43007 * 113.74008 * 301.33520 * 11 10 8 13 13 C 1.53097 * 109.26073 * 58.66660 * 12 11 10 14 14 N 1.47015 * 109.25802 * 303.14785 * 13 12 11 15 15 C 1.46904 * 111.00116 * 182.39025 * 14 13 12 16 16 C 1.50703 * 109.46991 * 300.98968 * 15 14 13 17 17 O 1.21288 * 119.99985 * 354.45901 * 16 15 14 18 18 N 1.34778 * 119.99819 * 174.45725 * 16 15 14 19 19 C 1.37100 * 119.99881 * 179.72607 * 18 16 15 20 20 H 1.08001 * 120.00049 * 0.27364 * 19 18 16 21 21 C 1.38950 * 119.99620 * 180.27612 * 19 18 16 22 22 N 1.31408 * 120.00440 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99568 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47191 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46775 * 120.00126 * 23 21 19 26 26 H 1.48502 * 109.46812 * 239.99713 * 23 21 19 27 27 C 1.52996 * 109.47329 * 120.00242 * 2 1 3 28 28 C 1.53003 * 117.50024 * 248.74831 * 27 2 1 29 29 C 1.53000 * 117.50105 * 180.08665 * 27 2 1 30 30 H 1.08997 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46937 * 299.99960 * 1 2 3 32 32 H 1.09003 * 109.46925 * 59.99529 * 1 2 3 33 33 H 0.96996 * 119.99968 * 359.97438 * 6 4 2 34 34 H 1.09003 * 109.47125 * 54.94354 * 7 6 4 35 35 H 1.09000 * 109.46852 * 294.95340 * 7 6 4 36 36 H 1.08996 * 109.50609 * 296.74202 * 10 8 7 37 37 H 1.09003 * 109.50694 * 56.86890 * 10 8 7 38 38 H 1.08998 * 109.51016 * 178.60484 * 12 11 10 39 39 H 1.09008 * 109.50520 * 298.68558 * 12 11 10 40 40 H 1.08998 * 109.50664 * 183.21817 * 13 12 11 41 41 H 1.08996 * 109.50462 * 63.08614 * 13 12 11 42 42 H 1.08995 * 109.46955 * 180.99303 * 15 14 13 43 43 H 1.09001 * 109.46673 * 60.98489 * 15 14 13 44 44 H 0.96997 * 120.00121 * 359.97438 * 18 16 15 45 45 H 0.97000 * 120.00241 * 180.02562 * 22 21 19 46 46 H 1.09000 * 115.54987 * 34.41600 * 27 2 1 47 47 H 1.08995 * 117.49764 * 359.97438 * 28 27 2 48 48 H 1.08997 * 117.49863 * 145.01874 * 28 27 2 49 49 H 1.09004 * 117.50044 * 214.97536 * 29 27 2 50 50 H 1.09000 * 117.49757 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1946 -0.9408 -3.6508 8 6 1.5837 -0.2965 -4.8967 9 1 2.0197 -0.7449 -5.7895 10 6 0.0693 -0.5213 -4.8994 11 8 -0.5048 0.1464 -6.0263 12 6 -0.2562 1.5545 -6.0493 13 6 1.2549 1.8004 -6.0584 14 7 1.8594 1.1476 -4.8880 15 6 3.3041 1.4073 -4.8281 16 6 3.9593 0.8942 -6.0845 17 8 3.3075 0.2757 -6.8992 18 7 5.2695 1.1226 -6.3028 19 6 5.8668 0.6509 -7.4431 20 1 5.2865 0.1002 -8.1686 21 6 7.2189 0.8815 -7.6654 22 7 7.9250 1.5520 -6.7829 23 14 8.0330 0.2382 -9.2189 24 1 7.0280 -0.4793 -10.0437 25 1 8.5888 1.3763 -9.9940 26 1 9.1295 -0.6942 -8.8533 27 6 2.0400 -0.7213 1.2492 28 6 2.7393 0.1230 2.3164 29 6 3.5550 -0.8263 1.4352 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.1488 0.5385 -2.5436 34 1 1.9067 -1.9911 -3.6066 35 1 3.2809 -0.8636 -3.6973 36 1 -0.1399 -1.5891 -4.9634 37 1 -0.3598 -0.1202 -3.9812 38 1 -0.7008 1.9881 -6.9450 39 1 -0.6954 2.0162 -5.1649 40 1 1.4495 2.8721 -6.0182 41 1 1.6857 1.3855 -6.9696 42 1 3.7291 0.8985 -3.9629 43 1 3.4770 2.4799 -4.7401 44 1 5.7907 1.6175 -5.6514 45 1 8.8688 1.7132 -6.9383 46 1 1.4319 -1.5595 1.5893 47 1 2.8364 1.1923 2.1284 48 1 2.5915 -0.1600 3.3586 49 1 3.9436 -1.7335 1.8981 50 1 4.1884 -0.3820 0.6674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733699819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:57 Heat of formation + Delta-G solvation = -107.653547 kcal Electronic energy + Delta-G solvation = -31169.399839 eV Core-core repulsion = 27003.654940 eV Total energy + Delta-G solvation = -4165.744899 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.67526 -40.77518 -39.54634 -38.04125 -36.94429 -36.04753 -35.21131 -33.53268 -33.37141 -31.92372 -30.36069 -27.82633 -27.08301 -25.50642 -25.26380 -23.71873 -23.15860 -22.51536 -21.53149 -20.75129 -20.69647 -19.81144 -18.20275 -17.82970 -17.62095 -17.45795 -16.92221 -16.59347 -16.33672 -16.25820 -15.82349 -15.73088 -15.60598 -15.48841 -15.42637 -15.09972 -14.70965 -14.47859 -14.02770 -13.62256 -13.40237 -13.32220 -13.23373 -13.07909 -12.98855 -12.80347 -12.63843 -12.47560 -12.35734 -12.25703 -12.17401 -11.97797 -11.90613 -11.50900 -11.39737 -11.30484 -11.08803 -10.92468 -10.62847 -10.51933 -10.04106 -9.97339 -9.15148 -8.51512 -6.01222 1.30548 1.37105 1.50554 1.75579 1.94371 2.19724 2.24550 2.75344 2.95577 3.07056 3.14588 3.19427 3.65700 3.72908 3.80456 3.91168 3.99488 4.02398 4.23039 4.24234 4.31206 4.32329 4.36870 4.43499 4.47224 4.50975 4.58880 4.61173 4.64939 4.67946 4.76786 4.85457 4.93480 4.96548 5.04902 5.08615 5.11583 5.24129 5.26812 5.30230 5.36568 5.41253 5.48290 5.75053 5.87870 5.95574 6.22591 6.52201 6.69662 7.06427 7.37932 7.48891 8.03280 8.64287 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010205 B = 0.003330 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.042049 B = 8407.604827 C =10440.961324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 H 0.113 0.887 4 C 0.508 3.492 5 O -0.581 6.581 6 N -0.703 5.703 7 C 0.141 3.859 8 C 0.024 3.976 9 H 0.062 0.938 10 C 0.080 3.920 11 O -0.404 6.404 12 C 0.071 3.929 13 C -0.003 4.003 14 N -0.482 5.482 15 C 0.048 3.952 16 C 0.407 3.593 17 O -0.619 6.619 18 N -0.568 5.568 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.990 3.010 24 H -0.274 1.274 25 H -0.269 1.269 26 H -0.272 1.272 27 C -0.140 4.140 28 C -0.158 4.158 29 C -0.182 4.182 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.417 0.583 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.041 0.959 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.395 0.605 45 H 0.278 0.722 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.085 0.915 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.534 3.384 15.884 23.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.131 0.869 4 C 0.296 3.704 5 O -0.461 6.461 6 N -0.356 5.356 7 C 0.016 3.984 8 C -0.086 4.086 9 H 0.080 0.920 10 C 0.003 3.997 11 O -0.322 6.322 12 C -0.006 4.006 13 C -0.131 4.131 14 N -0.206 5.206 15 C -0.084 4.084 16 C 0.195 3.805 17 O -0.507 6.507 18 N -0.205 5.205 19 C -0.462 4.462 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.558 5.558 23 Si 0.814 3.186 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.159 4.159 28 C -0.195 4.195 29 C -0.219 4.219 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.255 0.745 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.119 0.881 43 H 0.133 0.867 44 H 0.228 0.772 45 H 0.088 0.912 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.104 0.896 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.608 2.454 15.692 22.981 hybrid contribution 1.862 -0.219 -1.452 2.371 sum -14.747 2.235 14.240 20.622 Atomic orbital electron populations 1.21741 0.90512 1.02787 1.04233 1.20930 0.98998 1.00018 0.89507 0.86902 1.21312 0.79371 0.84281 0.85471 1.90697 1.39537 1.28448 1.87376 1.45819 1.53488 1.32207 1.04113 1.21027 0.97521 0.96248 0.83634 1.22729 0.98385 0.89878 0.97574 0.92029 1.22670 0.89217 0.98223 0.89599 1.87961 1.75380 1.21849 1.47056 1.22756 0.92899 0.81151 1.03749 1.23056 0.96634 1.00128 0.93240 1.62814 1.08719 1.09581 1.39440 1.22145 0.88619 1.03286 0.94361 1.22040 0.82718 0.84850 0.90942 1.90434 1.63341 1.46873 1.50060 1.42131 1.08746 1.49153 1.20428 1.19659 0.93320 1.33852 0.99397 0.90469 1.26021 0.96440 0.96809 1.01845 1.69668 1.09271 1.40327 1.36544 0.84917 0.77925 0.78248 0.77539 1.19916 1.19399 1.19748 1.22021 0.95172 1.02048 0.96653 1.23173 1.02279 0.97704 0.96354 1.22732 0.94296 1.01942 1.02964 0.92789 0.89479 0.90692 0.74467 0.91197 0.94115 0.88263 0.90221 0.87635 0.90038 0.88763 0.94077 0.88125 0.86749 0.77159 0.91247 0.87778 0.87612 0.87391 0.89615 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.07 71.98 0.65 -0.81 16 2 C -0.07 -1.19 2.88 -11.54 -0.03 -1.22 16 3 H 0.11 1.48 7.90 -2.39 -0.02 1.47 16 4 C 0.51 12.32 7.03 87.66 0.62 12.93 16 5 O -0.58 -19.61 15.08 -3.03 -0.05 -19.65 16 6 N -0.70 -15.32 4.94 -463.07 -2.29 -17.60 16 7 C 0.14 4.01 4.68 86.38 0.40 4.41 16 8 C 0.02 0.70 1.91 44.92 0.09 0.79 16 9 H 0.06 2.50 5.62 -2.39 -0.01 2.49 16 10 C 0.08 1.93 6.21 72.01 0.45 2.38 16 11 O -0.40 -11.30 10.83 -148.98 -1.61 -12.91 16 12 C 0.07 1.63 7.01 72.01 0.50 2.13 16 13 C 0.00 -0.07 5.25 86.31 0.45 0.38 16 14 N -0.48 -13.38 4.10 -874.54 -3.58 -16.96 16 15 C 0.05 1.54 5.55 85.56 0.48 2.01 16 16 C 0.41 18.40 7.16 87.66 0.63 19.03 16 17 O -0.62 -31.95 11.16 -3.06 -0.03 -31.98 16 18 N -0.57 -28.68 5.29 -306.98 -1.62 -30.30 16 19 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 22 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 23 Si 0.99 43.21 29.55 68.60 2.03 45.23 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 C -0.14 -2.52 4.72 -10.79 -0.05 -2.57 16 28 C -0.16 -2.29 10.18 30.62 0.31 -1.98 16 29 C -0.18 -3.92 8.98 30.62 0.27 -3.64 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.63 7.56 -2.39 -0.02 0.61 16 33 H 0.42 7.10 6.84 -92.71 -0.63 6.47 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 1.41 6.59 -2.39 -0.02 1.39 16 36 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.08 1.47 7.26 -2.39 -0.02 1.45 16 38 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 40 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.04 1.62 5.54 -2.39 -0.01 1.61 16 42 H 0.10 3.17 6.14 -2.39 -0.01 3.15 16 43 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.39 19.18 7.90 -92.71 -0.73 18.44 16 45 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 46 H 0.10 1.87 8.11 -2.39 -0.02 1.85 16 47 H 0.11 1.28 8.05 -2.39 -0.02 1.26 16 48 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.07 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -71.49 393.61 -1.23 -72.72 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: -0.40 Total: 44.94 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 6.05 Total: 15.79 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -7.21 Total: -114.12 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: -1.69 Total: -64.55 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.49 -1.23 -72.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733699819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.937 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds