Wall clock time and date at job start Sat Apr 11 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47325 * 2 1 4 4 C 1.50696 * 109.47272 * 240.00358 * 2 1 3 5 5 O 1.21289 * 120.00146 * 264.62912 * 4 2 1 6 6 N 1.34775 * 120.00057 * 84.62394 * 4 2 1 7 7 C 1.46932 * 120.62915 * 175.36083 * 6 4 2 8 8 C 1.53192 * 108.77447 * 233.58687 * 7 6 4 9 9 C 1.53032 * 109.31602 * 305.36764 * 8 7 6 10 10 O 1.42903 * 109.45815 * 301.35708 * 9 8 7 11 11 C 1.53000 * 109.46204 * 181.38785 * 9 8 7 12 12 N 1.46504 * 109.47209 * 184.97403 * 11 9 8 13 13 C 1.36930 * 120.00004 * 179.97438 * 12 11 9 14 14 H 1.08007 * 120.00303 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00213 * 179.97438 * 13 12 11 16 16 N 1.31622 * 120.00021 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00317 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47165 * 60.00031 * 17 15 13 19 19 H 1.48504 * 109.47009 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46968 * 299.99830 * 17 15 13 21 21 C 1.53044 * 109.52954 * 61.36993 * 9 8 7 22 22 C 1.46925 * 120.63305 * 355.34091 * 6 4 2 23 23 C 1.52998 * 109.46931 * 120.00186 * 2 1 3 24 24 H 1.09003 * 110.21466 * 59.52798 * 23 2 1 25 25 C 1.54481 * 110.24595 * 297.50014 * 23 2 1 26 26 C 1.54622 * 101.76715 * 266.41536 * 25 23 2 27 27 C 1.51286 * 104.19498 * 335.20355 * 26 25 23 28 28 O 1.21279 * 124.93987 * 196.26873 * 27 26 25 29 29 N 1.34411 * 110.11746 * 16.25118 * 27 26 25 30 30 H 1.08997 * 109.47331 * 186.30295 * 1 2 3 31 31 H 1.09002 * 109.47038 * 306.31219 * 1 2 3 32 32 H 1.09003 * 109.47049 * 66.30931 * 1 2 3 33 33 H 1.09000 * 109.58891 * 113.80348 * 7 6 4 34 34 H 1.08995 * 109.58596 * 353.37483 * 7 6 4 35 35 H 1.09008 * 109.49356 * 185.41204 * 8 7 6 36 36 H 1.09000 * 109.50007 * 65.32031 * 8 7 6 37 37 H 0.96699 * 114.00281 * 180.02562 * 10 9 8 38 38 H 1.09001 * 109.47239 * 64.96924 * 11 9 8 39 39 H 1.09003 * 109.47045 * 304.96854 * 11 9 8 40 40 H 0.97000 * 120.00145 * 359.97438 * 12 11 9 41 41 H 0.96997 * 120.00685 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.49197 * 58.57896 * 21 9 8 43 43 H 1.08993 * 109.49769 * 178.67952 * 21 9 8 44 44 H 1.08998 * 109.58751 * 246.19980 * 22 6 4 45 45 H 1.09002 * 109.58303 * 6.62511 * 22 6 4 46 46 H 1.08998 * 110.96586 * 24.54052 * 25 23 2 47 47 H 1.09004 * 110.96731 * 148.29678 * 25 23 2 48 48 H 1.08999 * 110.48829 * 216.52729 * 26 25 23 49 49 H 1.09006 * 110.59915 * 93.93547 * 26 25 23 50 50 H 0.97002 * 124.35032 * 180.42688 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.3272 -1.8855 -1.1744 6 7 2.1539 -0.0398 -2.3932 7 6 2.7369 -0.6899 -3.5749 8 6 3.8811 0.1812 -4.1028 9 6 3.3626 1.5984 -4.3568 10 8 2.2891 1.5509 -5.2989 11 6 4.4942 2.4625 -4.9169 12 7 4.0325 3.8466 -5.0486 13 6 4.8793 4.8078 -5.5324 14 1 5.8878 4.5456 -5.8165 15 6 4.4417 6.1191 -5.6577 16 7 3.2128 6.4388 -5.3111 17 14 5.5972 7.4305 -6.3170 18 1 6.0301 7.0642 -7.6894 19 1 4.8937 8.7379 -6.3518 20 1 6.7863 7.5321 -5.4333 21 6 2.8617 2.2031 -3.0432 22 6 1.7056 1.3551 -2.5035 23 6 2.0400 -0.7213 1.2492 24 1 1.6764 -1.7488 1.2656 25 6 1.5872 0.0285 2.5217 26 6 2.8020 0.9445 2.7971 27 6 3.9624 0.2290 2.1410 28 8 5.1330 0.4608 2.3570 29 7 3.5071 -0.7010 1.2841 30 1 -0.3634 -1.0214 0.1128 31 1 -0.3633 0.6086 0.8281 32 1 -0.3633 0.4129 -0.9411 33 1 1.9742 -0.7980 -4.3461 34 1 3.1222 -1.6715 -3.2991 35 1 4.2593 -0.2403 -5.0342 36 1 4.6833 0.2140 -3.3656 37 1 1.9109 2.4158 -5.5083 38 1 4.7907 2.0837 -5.8950 39 1 5.3476 2.4272 -4.2396 40 1 3.1269 4.0822 -4.7931 41 1 2.9068 7.3550 -5.3989 42 1 3.6736 2.2166 -2.3161 43 1 2.5142 3.2208 -3.2203 44 1 0.8588 1.4138 -3.1872 45 1 1.4106 1.7227 -1.5207 46 1 0.6903 0.6172 2.3291 47 1 1.4268 -0.6653 3.3470 48 1 2.9711 1.0419 3.8695 49 1 2.6534 1.9250 2.3446 50 1 4.0752 -1.2842 0.7566 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733887419.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:21 Heat of formation + Delta-G solvation = -112.651437 kcal Electronic energy + Delta-G solvation = -31393.111397 eV Core-core repulsion = 27227.149773 eV Total energy + Delta-G solvation = -4165.961624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.20415 -40.05292 -38.61166 -36.91748 -35.58464 -34.09420 -33.52775 -31.89666 -31.55537 -31.04668 -30.33817 -27.17212 -26.85483 -25.06312 -23.70294 -23.40805 -22.13567 -21.10587 -20.72238 -20.05284 -19.01897 -17.98098 -17.53511 -17.17873 -16.62082 -15.92367 -15.71484 -15.47174 -15.07920 -14.92223 -14.49555 -14.28926 -14.16706 -14.07224 -13.78932 -13.56169 -13.45692 -13.33458 -13.20513 -12.91035 -12.69592 -12.36395 -12.33238 -12.22553 -12.01540 -11.92484 -11.65638 -11.51130 -11.17250 -11.13768 -11.08436 -11.04457 -10.85140 -10.36478 -10.19953 -10.04451 -9.82556 -9.70994 -9.47038 -9.34698 -8.97897 -8.63329 -7.05223 -5.87495 -3.16490 2.41772 2.46859 2.86411 3.14507 3.39341 3.43934 3.44746 3.93817 4.11782 4.19314 4.38519 4.48628 4.50971 4.62656 4.67277 4.77451 4.86538 4.91190 4.98884 5.07256 5.12076 5.21484 5.26976 5.32847 5.35746 5.45758 5.46777 5.48970 5.52207 5.58850 5.63509 5.73442 5.79617 5.82738 5.93033 5.97921 6.06353 6.28868 6.32903 6.50379 6.59962 6.64300 6.65472 6.86284 7.32251 7.61718 8.01563 8.02501 8.07407 8.31353 9.42511 9.95406 10.29943 11.35217 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012807 B = 0.002999 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.826885 B = 9333.305708 C =10286.862669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 H 0.100 0.900 4 C 0.522 3.478 5 O -0.551 6.551 6 N -0.602 5.602 7 C 0.119 3.881 8 C -0.117 4.117 9 C 0.131 3.869 10 O -0.561 6.561 11 C 0.128 3.872 12 N -0.729 5.729 13 C -0.242 4.242 14 H 0.070 0.930 15 C -0.010 4.010 16 N -0.935 5.935 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.286 1.286 21 C -0.158 4.158 22 C 0.109 3.891 23 C 0.149 3.851 24 H 0.100 0.900 25 C -0.130 4.130 26 C -0.159 4.159 27 C 0.516 3.484 28 O -0.535 6.535 29 N -0.723 5.723 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.383 0.617 38 H 0.029 0.971 39 H 0.025 0.975 40 H 0.380 0.620 41 H 0.257 0.743 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.802 -14.537 13.860 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 H 0.118 0.882 4 C 0.310 3.690 5 O -0.429 6.429 6 N -0.334 5.334 7 C -0.003 4.003 8 C -0.156 4.156 9 C 0.090 3.910 10 O -0.368 6.368 11 C 0.000 4.000 12 N -0.375 5.375 13 C -0.373 4.373 14 H 0.088 0.912 15 C -0.207 4.207 16 N -0.583 5.583 17 Si 0.739 3.261 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.197 4.197 22 C -0.014 4.014 23 C 0.043 3.957 24 H 0.118 0.882 25 C -0.168 4.168 26 C -0.199 4.199 27 C 0.302 3.698 28 O -0.412 6.412 29 N -0.378 5.378 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.232 0.768 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.215 0.785 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.121 0.879 49 H 0.124 0.876 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.815 -15.504 14.023 22.687 hybrid contribution 0.524 1.479 -0.767 1.747 sum -8.290 -14.025 13.256 21.003 Atomic orbital electron populations 1.21797 0.91521 1.03405 1.03384 1.21842 0.98464 1.01428 0.93336 0.88232 1.20429 0.77484 0.86921 0.84122 1.90665 1.51288 1.15852 1.85111 1.48141 1.60845 1.13623 1.10836 1.21526 0.95927 0.96350 0.86543 1.21851 0.97690 0.94118 1.01903 1.21268 0.87647 0.94502 0.87584 1.86370 1.51145 1.35729 1.63594 1.21330 0.94522 0.86260 0.97920 1.42305 1.14459 1.02426 1.78340 1.19166 0.94697 0.88367 1.35081 0.91213 1.24714 0.96643 0.97303 1.01991 1.69613 1.16043 1.18619 1.54051 0.86248 0.79869 0.81132 0.78825 1.21214 1.21610 1.21220 1.22549 0.98601 1.00366 0.98166 1.21839 0.97693 0.80043 1.01794 1.21477 0.80175 1.00869 0.93163 0.88221 1.22746 0.98459 0.98787 0.96800 1.22374 0.93853 1.00369 1.03312 1.20954 0.89757 0.79761 0.79281 1.90773 1.18957 1.66764 1.64681 1.46339 1.07929 1.38920 1.44577 0.91421 0.90721 0.91382 0.90611 0.89462 0.89944 0.90541 0.76846 0.95271 0.95674 0.78473 0.93367 0.90855 0.88874 0.90430 0.89946 0.88491 0.89442 0.87929 0.87590 0.74723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.61 37.16 0.32 -0.50 16 2 C -0.13 -1.03 1.63 -91.77 -0.15 -1.18 16 3 H 0.10 0.79 6.49 -51.93 -0.34 0.46 16 4 C 0.52 6.02 6.49 -10.99 -0.07 5.95 16 5 O -0.55 -7.77 15.30 5.55 0.08 -7.69 16 6 N -0.60 -7.09 2.97 -172.77 -0.51 -7.60 16 7 C 0.12 1.49 6.18 -3.71 -0.02 1.47 16 8 C -0.12 -1.57 5.11 -26.62 -0.14 -1.70 16 9 C 0.13 1.99 0.71 -90.58 -0.06 1.93 16 10 O -0.56 -8.72 11.70 -35.23 -0.41 -9.13 16 11 C 0.13 2.47 5.43 -4.04 -0.02 2.44 16 12 N -0.73 -17.13 5.07 -59.91 -0.30 -17.43 16 13 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 14 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 15 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 17 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 C -0.16 -2.22 4.88 -26.61 -0.13 -2.35 16 22 C 0.11 1.20 5.55 -3.71 -0.02 1.18 16 23 C 0.15 1.13 2.58 -67.01 -0.17 0.96 16 24 H 0.10 0.77 7.91 -51.93 -0.41 0.35 16 25 C -0.13 -0.65 6.53 -25.10 -0.16 -0.81 16 26 C -0.16 -1.15 6.86 -26.74 -0.18 -1.33 16 27 C 0.52 6.06 8.43 -10.86 -0.09 5.97 16 28 O -0.54 -8.86 18.03 5.56 0.10 -8.76 16 29 N -0.72 -7.41 5.45 -52.76 -0.29 -7.69 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.27 6.46 -51.93 -0.34 -0.07 16 32 H 0.07 0.43 7.42 -51.93 -0.39 0.04 16 33 H 0.08 0.98 7.81 -51.93 -0.41 0.57 16 34 H 0.09 1.12 7.03 -51.93 -0.37 0.76 16 35 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.38 5.91 8.19 45.56 0.37 6.28 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.38 8.99 5.55 -40.82 -0.23 8.76 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 1.47 6.53 -51.93 -0.34 1.13 16 44 H 0.08 0.85 7.81 -51.93 -0.41 0.45 16 45 H 0.08 0.74 5.16 -51.93 -0.27 0.47 16 46 H 0.10 0.30 6.06 -51.93 -0.31 -0.02 16 47 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.41 4.67 8.79 -40.82 -0.36 4.31 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -33.74 387.56 -8.07 -41.81 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -7.13 Total: 14.85 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.15 Total: 4.94 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.38 Total: -58.77 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.23 Total: -25.58 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.74 -8.07 -41.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733887419.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.840 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds