Wall clock time and date at job start Sat Apr 11 2020 05:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46903 * 2 1 4 4 C 1.50699 * 109.46928 * 119.99440 * 2 1 3 5 5 O 1.21280 * 120.00115 * 94.32213 * 4 2 1 6 6 N 1.34775 * 119.99996 * 274.31306 * 4 2 1 7 7 C 1.46924 * 120.63541 * 4.91343 * 6 4 2 8 8 C 1.52759 * 109.00763 * 233.58143 * 7 6 4 9 9 C 1.53040 * 109.38380 * 305.58207 * 8 7 6 10 10 O 1.42895 * 109.45918 * 301.22588 * 9 8 7 11 11 C 1.52993 * 109.44852 * 181.25476 * 9 8 7 12 12 N 1.46505 * 109.47331 * 59.94050 * 11 9 8 13 13 C 1.36935 * 120.00176 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00032 * 359.97438 * 13 12 11 15 15 C 1.38806 * 119.99952 * 180.02562 * 13 12 11 16 16 N 1.31626 * 120.00215 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00245 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47190 * 89.99534 * 17 15 13 19 19 H 1.48504 * 109.47223 * 209.99701 * 17 15 13 20 20 H 1.48498 * 109.47004 * 329.99580 * 17 15 13 21 21 C 1.53044 * 109.53548 * 61.24235 * 9 8 7 22 22 C 1.46932 * 120.62888 * 185.18367 * 6 4 2 23 23 C 1.52998 * 109.47671 * 239.99800 * 2 1 3 24 24 H 1.08999 * 110.28170 * 300.52551 * 23 2 1 25 25 C 1.54664 * 110.17998 * 62.64476 * 23 2 1 26 26 C 1.54629 * 101.68493 * 144.68530 * 25 23 2 27 27 C 1.51281 * 104.19377 * 334.98747 * 26 25 23 28 28 O 1.21282 * 124.94312 * 196.23448 * 27 26 25 29 29 N 1.34416 * 110.11617 * 16.25285 * 27 26 25 30 30 H 1.08998 * 109.46654 * 181.15114 * 1 2 3 31 31 H 1.08996 * 109.47192 * 301.15697 * 1 2 3 32 32 H 1.09007 * 109.46755 * 61.15902 * 1 2 3 33 33 H 1.09003 * 109.58141 * 353.40962 * 7 6 4 34 34 H 1.08997 * 109.58778 * 113.83779 * 7 6 4 35 35 H 1.09003 * 109.55915 * 185.54809 * 8 7 6 36 36 H 1.08998 * 109.38760 * 65.51539 * 8 7 6 37 37 H 0.96703 * 113.99695 * 300.06316 * 10 9 8 38 38 H 1.08998 * 109.47111 * 179.97438 * 11 9 8 39 39 H 1.08997 * 109.47588 * 299.94328 * 11 9 8 40 40 H 0.97002 * 119.99701 * 359.97438 * 12 11 9 41 41 H 0.96997 * 119.99742 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.49267 * 178.68325 * 21 9 8 43 43 H 1.08998 * 109.52582 * 58.60143 * 21 9 8 44 44 H 1.08991 * 109.59048 * 246.16189 * 22 6 4 45 45 H 1.09007 * 109.58574 * 6.44896 * 22 6 4 46 46 H 1.08996 * 111.19222 * 26.51134 * 25 23 2 47 47 H 1.09003 * 110.85356 * 262.70859 * 25 23 2 48 48 H 1.09001 * 110.48521 * 216.31353 * 26 25 23 49 49 H 1.09000 * 110.60009 * 93.71906 * 26 25 23 50 50 H 0.97002 * 124.35352 * 180.40927 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3090 -1.8900 1.1793 6 7 2.1741 -0.0345 2.3880 7 6 1.7429 1.3659 2.4950 8 6 2.9072 2.2066 3.0157 9 6 3.4219 1.6053 4.3256 10 8 2.3614 1.5710 5.2827 11 6 4.5676 2.4640 4.8648 12 7 4.0850 3.8259 5.1073 13 6 4.9394 4.7784 5.5950 14 1 5.9689 4.5256 5.8012 15 6 4.4820 6.0685 5.8252 16 7 3.2271 6.3765 5.5743 17 14 5.6473 7.3678 6.4912 18 1 6.3053 8.0692 5.3598 19 1 4.8834 8.3479 7.3042 20 1 6.6795 6.7191 7.3390 21 6 3.9263 0.1828 4.0723 22 6 2.7684 -0.6826 3.5652 23 6 2.0401 -0.7213 -1.2492 24 1 1.6765 -1.7486 -1.2672 25 6 1.5892 0.0326 -2.5221 26 6 2.8021 -0.1787 -3.4575 27 6 3.9625 -0.4080 -2.5143 28 8 5.1332 -0.3380 -2.8233 29 7 3.5072 -0.7009 -1.2840 30 1 -0.3632 -1.0275 0.0206 31 1 -0.3633 0.5317 0.8794 32 1 -0.3633 0.4958 -0.9003 33 1 1.4407 1.7311 1.5134 34 1 0.9048 1.4383 3.1881 35 1 2.5697 3.2279 3.1921 36 1 3.7091 2.2109 2.2775 37 1 1.9923 2.4400 5.4921 38 1 4.9341 2.0364 5.7979 39 1 5.3768 2.4900 4.1350 40 1 3.1602 4.0528 4.9224 41 1 2.9076 7.2782 5.7349 42 1 4.3142 -0.2363 5.0008 43 1 4.7187 0.2050 3.3242 44 1 2.0157 -0.7806 4.3473 45 1 3.1404 -1.6696 3.2901 46 1 1.4336 1.0920 -2.3183 47 1 0.6897 -0.4180 -2.9418 48 1 2.9744 0.7095 -4.0654 49 1 2.6490 -1.0510 -4.0930 50 1 4.0752 -0.8800 -0.5184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733887421.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:24 Heat of formation + Delta-G solvation = -114.558296 kcal Electronic energy + Delta-G solvation = -31150.835835 eV Core-core repulsion = 26984.791524 eV Total energy + Delta-G solvation = -4166.044312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16793 -40.08719 -38.66121 -36.91230 -35.62493 -34.08225 -33.65359 -31.91421 -31.60759 -31.11872 -30.39775 -27.16101 -26.88949 -24.94752 -23.62837 -23.42740 -22.16177 -21.25630 -20.72244 -20.12566 -19.02735 -17.92584 -17.55523 -17.22012 -16.65534 -15.98962 -15.88138 -15.46772 -15.07478 -14.93114 -14.46803 -14.31198 -14.20418 -14.05107 -13.79653 -13.65238 -13.34960 -13.33400 -13.14714 -12.95020 -12.71533 -12.52336 -12.40706 -12.37146 -11.94069 -11.87619 -11.61386 -11.55915 -11.33590 -11.16579 -11.10152 -11.06495 -10.88428 -10.36021 -10.19300 -10.07336 -9.84390 -9.73678 -9.48494 -9.34255 -8.99715 -8.66484 -7.06697 -5.89074 -3.18091 2.39576 2.41632 2.82794 3.11730 3.37430 3.43437 3.44423 3.88904 4.04840 4.18955 4.35711 4.45866 4.49966 4.63785 4.71264 4.73380 4.75073 4.87530 4.95317 5.05125 5.10504 5.21141 5.29551 5.30206 5.32840 5.42855 5.44725 5.45622 5.47563 5.56322 5.64884 5.71000 5.78324 5.81526 5.91411 5.96132 6.03850 6.24266 6.30879 6.47460 6.56380 6.61090 6.64061 6.82804 7.28470 7.60689 7.98213 8.00699 8.04323 8.30009 9.40915 9.93703 10.27978 11.33688 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.002771 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.278763 B =10101.371076 C =10899.576888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 H 0.103 0.897 4 C 0.517 3.483 5 O -0.547 6.547 6 N -0.602 5.602 7 C 0.109 3.891 8 C -0.159 4.159 9 C 0.131 3.869 10 O -0.560 6.560 11 C 0.128 3.872 12 N -0.729 5.729 13 C -0.241 4.241 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.934 5.934 17 Si 0.908 3.092 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.117 4.117 22 C 0.118 3.882 23 C 0.149 3.851 24 H 0.094 0.906 25 C -0.128 4.128 26 C -0.156 4.156 27 C 0.517 3.483 28 O -0.537 6.537 29 N -0.722 5.722 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.383 0.617 38 H 0.029 0.971 39 H 0.025 0.975 40 H 0.380 0.620 41 H 0.256 0.744 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 -14.090 -14.396 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 H 0.121 0.879 4 C 0.304 3.696 5 O -0.425 6.425 6 N -0.334 5.334 7 C -0.014 4.014 8 C -0.197 4.197 9 C 0.090 3.910 10 O -0.368 6.368 11 C 0.000 4.000 12 N -0.375 5.375 13 C -0.372 4.372 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.583 5.583 17 Si 0.739 3.261 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.156 4.156 22 C -0.004 4.004 23 C 0.044 3.956 24 H 0.112 0.888 25 C -0.166 4.166 26 C -0.197 4.197 27 C 0.303 3.697 28 O -0.414 6.414 29 N -0.378 5.378 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.232 0.768 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.214 0.786 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -8.802 -15.211 -14.624 22.863 hybrid contribution 0.501 1.631 0.888 1.923 sum -8.301 -13.579 -13.737 21.024 Atomic orbital electron populations 1.21736 0.91285 1.03450 1.03488 1.21764 0.98743 1.01309 0.92806 0.87926 1.20504 0.77740 0.87096 0.84227 1.90697 1.51431 1.15436 1.84912 1.48158 1.60722 1.13198 1.11336 1.21752 0.97848 0.79898 1.01896 1.22486 0.98506 1.00471 0.98287 1.21265 0.87888 0.94495 0.87376 1.86372 1.52279 1.35622 1.62500 1.21317 0.94350 0.86612 0.97712 1.42271 1.11427 1.04947 1.78829 1.19199 0.92871 0.89827 1.35283 0.91148 1.24723 0.96390 0.97516 1.02106 1.69626 1.14064 1.19833 1.54768 0.86169 0.79799 0.81618 0.78479 1.21657 1.21693 1.20734 1.21853 0.97611 0.94079 1.02022 1.21539 0.95739 0.96408 0.86732 1.21585 0.80112 1.00299 0.93654 0.88839 1.22769 0.98242 1.01900 0.93712 1.22358 0.93788 1.05120 0.98387 1.20891 0.89732 0.75249 0.83779 1.90769 1.18960 1.52257 1.79436 1.46348 1.07924 1.71285 1.12215 0.91481 0.91301 0.90712 0.89902 0.90402 0.88914 0.90882 0.76785 0.95328 0.95686 0.78565 0.93409 0.89892 0.90532 0.90566 0.89425 0.89407 0.88767 0.87892 0.87731 0.74956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.83 37.16 0.33 -0.47 16 2 C -0.12 -0.96 1.53 -91.77 -0.14 -1.10 16 3 H 0.10 0.76 6.43 -51.93 -0.33 0.43 16 4 C 0.52 5.76 6.17 -10.99 -0.07 5.69 16 5 O -0.55 -7.68 15.33 5.56 0.09 -7.59 16 6 N -0.60 -6.80 2.98 -173.03 -0.52 -7.32 16 7 C 0.11 1.15 5.63 -3.93 -0.02 1.13 16 8 C -0.16 -2.13 4.91 -26.83 -0.13 -2.26 16 9 C 0.13 1.94 0.71 -90.58 -0.06 1.88 16 10 O -0.56 -8.67 11.71 -35.23 -0.41 -9.08 16 11 C 0.13 2.43 5.40 -4.04 -0.02 2.41 16 12 N -0.73 -16.93 5.07 -59.91 -0.30 -17.23 16 13 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 17 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.12 -1.52 5.11 -26.61 -0.14 -1.65 16 22 C 0.12 1.44 6.18 -3.71 -0.02 1.42 16 23 C 0.15 1.13 2.59 -66.92 -0.17 0.95 16 24 H 0.09 0.75 7.91 -51.93 -0.41 0.34 16 25 C -0.13 -0.62 5.59 -25.00 -0.14 -0.76 16 26 C -0.16 -1.05 6.86 -26.74 -0.18 -1.24 16 27 C 0.52 5.94 8.43 -10.86 -0.09 5.84 16 28 O -0.54 -8.68 18.03 5.56 0.10 -8.58 16 29 N -0.72 -7.44 5.68 -52.67 -0.30 -7.74 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.41 7.43 -51.93 -0.39 0.02 16 32 H 0.07 0.27 7.29 -51.92 -0.38 -0.11 16 33 H 0.08 0.70 5.10 -51.93 -0.27 0.43 16 34 H 0.08 0.83 7.81 -51.93 -0.41 0.43 16 35 H 0.09 1.41 6.82 -51.93 -0.35 1.06 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.38 5.96 7.85 45.56 0.36 6.31 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.38 8.88 5.58 -40.82 -0.23 8.65 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.97 7.81 -51.93 -0.41 0.56 16 45 H 0.09 1.10 7.04 -51.93 -0.37 0.73 16 46 H 0.09 0.37 7.91 -51.93 -0.41 -0.04 16 47 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.41 4.77 8.29 -40.82 -0.34 4.43 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -33.59 388.86 -8.17 -41.76 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -7.27 Total: 14.21 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -1.11 Total: 4.83 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.39 Total: -58.19 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.23 Total: -25.25 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.59 -8.17 -41.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733887421.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.795 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds