Wall clock time and date at job start Sat Apr 11 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46972 * 2 1 4 4 C 1.50696 * 109.47308 * 240.00215 * 2 1 3 5 5 O 1.21286 * 119.99909 * 249.94713 * 4 2 1 6 6 N 1.34779 * 120.00180 * 69.94558 * 4 2 1 7 7 C 1.46503 * 119.99757 * 5.08669 * 6 4 2 8 8 C 1.46503 * 120.00141 * 185.09170 * 6 4 2 9 9 C 1.50696 * 109.46977 * 89.99822 * 8 6 4 10 10 H 1.07999 * 120.00540 * 359.97438 * 9 8 6 11 11 C 1.37884 * 119.99586 * 179.97438 * 9 8 6 12 12 N 1.31510 * 119.99705 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99822 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47102 * 90.00014 * 13 11 9 15 15 H 1.48502 * 109.46644 * 209.99601 * 13 11 9 16 16 H 1.48495 * 109.47450 * 329.99819 * 13 11 9 17 17 N 1.46896 * 109.47272 * 119.99718 * 2 1 3 18 18 C 1.47848 * 111.00186 * 179.15593 * 17 2 1 19 19 C 1.54910 * 104.79750 * 146.36542 * 18 17 2 20 20 C 1.55144 * 101.65170 * 322.93322 * 19 18 17 21 21 H 1.08998 * 110.85807 * 277.19774 * 20 19 18 22 22 C 1.53005 * 110.70416 * 154.03292 * 20 19 18 23 23 N 1.46495 * 109.46904 * 71.39995 * 22 20 19 24 24 C 1.47100 * 125.55855 * 89.99978 * 23 22 20 25 25 C 1.54087 * 103.90861 * 179.90243 * 24 23 22 26 26 O 1.46043 * 103.84199 * 0.11384 * 25 24 23 27 27 C 1.33767 * 109.51123 * 359.88003 * 26 25 24 28 28 O 1.21517 * 123.06766 * 180.02562 * 27 26 25 29 29 C 1.47443 * 111.00522 * 300.00212 * 17 2 1 30 30 H 1.08999 * 109.47445 * 51.08368 * 1 2 3 31 31 H 1.09005 * 109.46995 * 171.08517 * 1 2 3 32 32 H 1.08999 * 109.46996 * 291.08032 * 1 2 3 33 33 H 1.09005 * 109.46372 * 93.98901 * 7 6 4 34 34 H 1.08997 * 109.46890 * 213.98397 * 7 6 4 35 35 H 1.08999 * 109.47100 * 333.99257 * 7 6 4 36 36 H 1.09000 * 109.46654 * 210.00150 * 8 6 4 37 37 H 1.09000 * 109.46749 * 329.99680 * 8 6 4 38 38 H 0.97004 * 119.99901 * 179.97438 * 12 11 9 39 39 H 1.08997 * 110.37676 * 265.19478 * 18 17 2 40 40 H 1.09006 * 110.36861 * 27.42814 * 18 17 2 41 41 H 1.08993 * 110.99148 * 204.84316 * 19 18 17 42 42 H 1.08998 * 110.98735 * 81.02319 * 19 18 17 43 43 H 1.09001 * 109.47395 * 311.40129 * 22 20 19 44 44 H 1.09005 * 109.46793 * 191.40255 * 22 20 19 45 45 H 1.09003 * 110.56477 * 298.55488 * 24 23 22 46 46 H 1.09004 * 110.55989 * 61.25815 * 24 23 22 47 47 H 1.09000 * 110.52191 * 118.70456 * 25 24 23 48 48 H 1.08995 * 110.52187 * 241.44374 * 25 24 23 49 49 H 1.09001 * 109.88889 * 117.33405 * 29 17 2 50 50 H 1.09006 * 110.01856 * 356.22412 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.5741 -1.7907 -1.1283 6 7 1.8797 -0.1452 -2.4444 7 6 1.3272 1.2069 -2.5587 8 6 2.2661 -0.8829 -3.6498 9 6 1.0885 -1.6785 -4.1508 10 1 0.1465 -1.6390 -3.6240 11 6 1.2136 -2.4569 -5.2820 12 7 0.1861 -3.1517 -5.7191 13 14 2.8431 -2.5257 -6.1929 14 1 3.6710 -3.6294 -5.6435 15 1 2.5931 -2.7660 -7.6368 16 1 3.5603 -1.2367 -6.0224 17 7 2.0197 -0.6924 1.1994 18 6 3.4975 -0.7298 1.2235 19 6 3.8712 -0.6369 2.7239 20 6 2.7948 0.3462 3.2547 21 1 3.0879 1.3796 3.0696 22 6 2.5409 0.1168 4.7460 23 7 3.6952 0.5872 5.5158 24 6 3.8720 1.9473 6.0476 25 6 5.2354 1.8908 6.7632 26 8 5.6810 0.5153 6.5580 27 6 4.7619 -0.1513 5.8507 28 8 4.8837 -1.3196 5.5395 29 6 1.5470 -0.0239 2.4256 30 1 -0.3634 0.6455 -0.7996 31 1 -0.3633 -1.0153 -0.1593 32 1 -0.3633 0.3696 0.9589 33 1 2.1418 1.9303 -2.5947 34 1 0.7346 1.2813 -3.4705 35 1 0.6944 1.4149 -1.6959 36 1 2.5838 -0.1798 -4.4197 37 1 3.0877 -1.5592 -3.4139 38 1 0.2740 -3.6990 -6.5151 39 1 3.8604 -1.6659 0.7993 40 1 3.9074 0.1186 0.6753 41 1 4.8725 -0.2258 2.8522 42 1 3.7849 -1.6093 3.2087 43 1 2.3909 -0.9471 4.9296 44 1 1.6513 0.6673 5.0520 45 1 3.8948 2.6755 5.2368 46 1 3.0781 2.1880 6.7547 47 1 5.9351 2.5919 6.3081 48 1 5.1182 2.1021 7.8260 49 1 0.9106 -0.7011 2.9954 50 1 0.9916 0.8782 2.1684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495872596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:29 Heat of formation + Delta-G solvation = -73.791455 kcal Electronic energy + Delta-G solvation = -30630.252749 eV Core-core repulsion = 26465.976220 eV Total energy + Delta-G solvation = -4164.276529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88352 -40.03534 -38.37634 -37.40093 -36.03545 -34.87709 -33.61254 -32.42785 -31.02435 -29.61870 -29.01135 -27.92298 -26.43640 -25.91533 -24.15922 -23.73028 -22.13096 -21.57970 -20.85354 -20.12970 -18.48074 -17.81373 -17.64674 -17.20387 -16.94449 -16.63756 -16.31609 -15.27393 -15.06814 -14.98124 -14.66194 -14.52121 -14.40088 -14.10789 -13.87720 -13.76081 -13.55943 -13.24045 -13.06340 -12.88746 -12.44220 -12.31355 -12.28133 -12.24194 -12.02641 -11.79712 -11.46760 -11.34610 -11.26897 -11.14930 -11.10431 -11.00565 -10.79902 -10.73986 -10.62766 -10.49595 -10.11536 -9.51160 -9.32552 -8.89472 -8.56595 -8.13909 -7.64624 -6.06575 -4.05071 2.04339 2.44122 3.04683 3.31060 3.36616 3.37806 3.39419 3.64448 3.65405 4.10897 4.12842 4.17870 4.41816 4.46048 4.49389 4.65276 4.71096 4.81285 4.92133 5.00288 5.07495 5.18906 5.23383 5.27823 5.30918 5.31852 5.40092 5.44953 5.49385 5.66042 5.77821 5.80311 5.83920 5.89199 5.94419 6.02271 6.14309 6.26934 6.34294 6.43292 6.69538 6.95652 6.97987 7.05851 7.10879 7.38910 7.63554 7.72382 8.28673 8.49688 8.95831 9.04764 9.54011 11.06764 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.002280 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.603914 B =12278.954719 C =12705.186917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.055 0.945 4 C 0.513 3.487 5 O -0.522 6.522 6 N -0.600 5.600 7 C 0.074 3.926 8 C 0.216 3.784 9 C -0.528 4.528 10 H 0.075 0.925 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.267 1.267 17 N -0.503 5.503 18 C 0.049 3.951 19 C -0.117 4.117 20 C -0.132 4.132 21 H 0.076 0.924 22 C 0.158 3.842 23 N -0.630 5.630 24 C 0.064 3.936 25 C 0.042 3.958 26 O -0.332 6.332 27 C 0.640 3.360 28 O -0.511 6.511 29 C 0.051 3.949 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.037 0.963 38 H 0.264 0.736 39 H 0.096 0.904 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.106 0.894 49 H 0.081 0.919 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 18.783 25.249 31.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 H 0.072 0.928 4 C 0.298 3.702 5 O -0.397 6.397 6 N -0.333 5.333 7 C -0.070 4.070 8 C 0.096 3.904 9 C -0.566 4.566 10 H 0.093 0.907 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.227 5.227 18 C -0.078 4.078 19 C -0.155 4.155 20 C -0.152 4.152 21 H 0.094 0.906 22 C 0.038 3.962 23 N -0.378 5.378 24 C -0.059 4.059 25 C -0.033 4.033 26 O -0.242 6.242 27 C 0.394 3.606 28 O -0.395 6.395 29 C -0.077 4.077 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.124 0.876 48 H 0.124 0.876 49 H 0.100 0.900 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.622 16.854 25.024 30.522 hybrid contribution 0.877 1.125 -0.718 1.597 sum 5.499 17.979 24.306 30.729 Atomic orbital electron populations 1.21946 0.92183 1.04160 1.01995 1.21808 0.97301 0.95383 0.90486 0.92759 1.20082 0.79983 0.86177 0.83945 1.90657 1.42371 1.20904 1.85763 1.47786 1.62745 1.15812 1.06911 1.21867 0.98173 0.83665 1.03258 1.19642 0.97175 0.92055 0.81547 1.21328 0.97871 1.26682 1.10738 0.90733 1.24860 0.96442 0.94791 0.96952 1.69896 1.30241 1.29317 1.24122 0.86849 0.84526 0.79214 0.79079 1.19880 1.21102 1.19145 1.63387 1.09517 1.49970 0.99854 1.23068 0.86766 1.02419 0.95512 1.22770 0.97357 0.99916 0.95426 1.22892 0.97520 1.00184 0.94629 0.90570 1.21376 0.84728 1.01430 0.88710 1.48074 1.21371 1.11286 1.57041 1.22789 0.97893 0.85789 0.99470 1.24326 0.94942 0.81245 1.02835 1.87354 1.43056 1.24886 1.68909 1.18519 0.79062 0.85466 0.77576 1.91088 1.78345 1.12515 1.57543 1.22845 0.95930 0.97888 0.91085 0.90984 0.90824 0.91842 0.93928 0.90652 0.91429 0.95380 0.94522 0.92588 0.88563 0.94491 0.91736 0.89627 0.88742 0.89562 0.89138 0.89009 0.87643 0.87620 0.90044 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.88 37.16 0.33 -1.63 16 2 C 0.06 0.95 1.22 -68.87 -0.08 0.87 16 3 H 0.05 0.71 7.47 -51.93 -0.39 0.33 16 4 C 0.51 10.66 6.49 -10.99 -0.07 10.59 16 5 O -0.52 -13.11 14.31 5.55 0.08 -13.04 16 6 N -0.60 -12.50 2.86 -182.95 -0.52 -13.02 16 7 C 0.07 1.14 10.02 59.85 0.60 1.74 16 8 C 0.22 5.39 4.29 -5.19 -0.02 5.37 16 9 C -0.53 -15.31 9.94 -34.44 -0.34 -15.65 16 10 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 13 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 14 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 17 N -0.50 -7.46 4.78 -224.67 -1.07 -8.53 16 18 C 0.05 0.75 5.44 -2.29 -0.01 0.74 16 19 C -0.12 -1.45 5.49 -24.59 -0.13 -1.58 16 20 C -0.13 -1.17 3.17 -88.79 -0.28 -1.46 16 21 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 22 C 0.16 1.15 5.33 -4.04 -0.02 1.13 16 23 N -0.63 -4.77 2.92 -178.84 -0.52 -5.29 16 24 C 0.06 0.20 7.69 -3.15 -0.02 0.18 16 25 C 0.04 0.14 8.25 37.72 0.31 0.45 16 26 O -0.33 -3.17 11.10 -37.82 -0.42 -3.59 16 27 C 0.64 7.26 8.47 53.71 0.45 7.72 16 28 O -0.51 -8.01 16.51 -19.12 -0.32 -8.33 16 29 C 0.05 0.52 5.61 -2.84 -0.02 0.50 16 30 H 0.07 0.91 5.72 -51.93 -0.30 0.61 16 31 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 32 H 0.06 0.66 6.29 -51.93 -0.33 0.33 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.07 0.85 4.09 -51.93 -0.21 0.64 16 36 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 37 H 0.04 0.98 6.79 -51.93 -0.35 0.63 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 39 H 0.10 1.77 7.15 -51.93 -0.37 1.40 16 40 H 0.04 0.55 7.76 -51.93 -0.40 0.15 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.22 7.52 -51.93 -0.39 0.83 16 43 H 0.09 0.85 7.78 -51.93 -0.40 0.44 16 44 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 47 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.11 0.12 8.14 -51.93 -0.42 -0.31 16 49 H 0.08 0.79 7.82 -51.93 -0.41 0.38 16 50 H 0.06 0.51 6.42 -51.93 -0.33 0.17 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -38.99 390.06 -8.27 -47.26 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -8.07 Total: -2.45 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 0.59 Total: 10.98 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -1.34 Total: -53.98 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.66 Total: -24.96 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.99 -8.27 -47.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495872596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.527 kcal (2) G-P(sol) polarization free energy of solvation -38.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds