Wall clock time and date at job start Sat Apr 11 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46972 * 2 1 4 4 C 1.50696 * 109.47308 * 240.00215 * 2 1 3 5 5 O 1.21286 * 119.99909 * 249.94713 * 4 2 1 6 6 N 1.34779 * 120.00180 * 69.94558 * 4 2 1 7 7 C 1.46503 * 119.99757 * 5.08669 * 6 4 2 8 8 C 1.46503 * 120.00141 * 185.09170 * 6 4 2 9 9 C 1.50696 * 109.46977 * 89.99822 * 8 6 4 10 10 H 1.07999 * 120.00540 * 359.97438 * 9 8 6 11 11 C 1.37884 * 119.99586 * 179.97438 * 9 8 6 12 12 N 1.31510 * 119.99705 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99822 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47102 * 90.00014 * 13 11 9 15 15 H 1.48502 * 109.46644 * 209.99601 * 13 11 9 16 16 H 1.48495 * 109.47450 * 329.99819 * 13 11 9 17 17 N 1.46896 * 109.47272 * 119.99718 * 2 1 3 18 18 C 1.47848 * 111.00186 * 179.15593 * 17 2 1 19 19 C 1.54910 * 104.79750 * 146.36542 * 18 17 2 20 20 C 1.55144 * 101.65170 * 322.93322 * 19 18 17 21 21 H 1.08998 * 110.85807 * 277.19774 * 20 19 18 22 22 C 1.53005 * 110.70416 * 154.03292 * 20 19 18 23 23 N 1.46495 * 109.46904 * 71.39995 * 22 20 19 24 24 C 1.47100 * 125.55855 * 89.99978 * 23 22 20 25 25 C 1.54087 * 103.90861 * 179.90243 * 24 23 22 26 26 O 1.46043 * 103.84199 * 0.11384 * 25 24 23 27 27 C 1.33767 * 109.51123 * 359.88003 * 26 25 24 28 28 O 1.21517 * 123.06766 * 180.02562 * 27 26 25 29 29 C 1.47443 * 111.00522 * 300.00212 * 17 2 1 30 30 H 1.08999 * 109.47445 * 51.08368 * 1 2 3 31 31 H 1.09005 * 109.46995 * 171.08517 * 1 2 3 32 32 H 1.08999 * 109.46996 * 291.08032 * 1 2 3 33 33 H 1.09005 * 109.46372 * 93.98901 * 7 6 4 34 34 H 1.08997 * 109.46890 * 213.98397 * 7 6 4 35 35 H 1.08999 * 109.47100 * 333.99257 * 7 6 4 36 36 H 1.09000 * 109.46654 * 210.00150 * 8 6 4 37 37 H 1.09000 * 109.46749 * 329.99680 * 8 6 4 38 38 H 0.97004 * 119.99901 * 179.97438 * 12 11 9 39 39 H 1.08997 * 110.37676 * 265.19478 * 18 17 2 40 40 H 1.09006 * 110.36861 * 27.42814 * 18 17 2 41 41 H 1.08993 * 110.99148 * 204.84316 * 19 18 17 42 42 H 1.08998 * 110.98735 * 81.02319 * 19 18 17 43 43 H 1.09001 * 109.47395 * 311.40129 * 22 20 19 44 44 H 1.09005 * 109.46793 * 191.40255 * 22 20 19 45 45 H 1.09003 * 110.56477 * 298.55488 * 24 23 22 46 46 H 1.09004 * 110.55989 * 61.25815 * 24 23 22 47 47 H 1.09000 * 110.52191 * 118.70456 * 25 24 23 48 48 H 1.08995 * 110.52187 * 241.44374 * 25 24 23 49 49 H 1.09001 * 109.88889 * 117.33405 * 29 17 2 50 50 H 1.09006 * 110.01856 * 356.22412 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.5741 -1.7907 -1.1283 6 7 1.8797 -0.1452 -2.4444 7 6 1.3272 1.2069 -2.5587 8 6 2.2661 -0.8829 -3.6498 9 6 1.0885 -1.6785 -4.1508 10 1 0.1465 -1.6390 -3.6240 11 6 1.2136 -2.4569 -5.2820 12 7 0.1861 -3.1517 -5.7191 13 14 2.8431 -2.5257 -6.1929 14 1 3.6710 -3.6294 -5.6435 15 1 2.5931 -2.7660 -7.6368 16 1 3.5603 -1.2367 -6.0224 17 7 2.0197 -0.6924 1.1994 18 6 3.4975 -0.7298 1.2235 19 6 3.8712 -0.6369 2.7239 20 6 2.7948 0.3462 3.2547 21 1 3.0879 1.3796 3.0696 22 6 2.5409 0.1168 4.7460 23 7 3.6952 0.5872 5.5158 24 6 3.8720 1.9473 6.0476 25 6 5.2354 1.8908 6.7632 26 8 5.6810 0.5153 6.5580 27 6 4.7619 -0.1513 5.8507 28 8 4.8837 -1.3196 5.5395 29 6 1.5470 -0.0239 2.4256 30 1 -0.3634 0.6455 -0.7996 31 1 -0.3633 -1.0153 -0.1593 32 1 -0.3633 0.3696 0.9589 33 1 2.1418 1.9303 -2.5947 34 1 0.7346 1.2813 -3.4705 35 1 0.6944 1.4149 -1.6959 36 1 2.5838 -0.1798 -4.4197 37 1 3.0877 -1.5592 -3.4139 38 1 0.2740 -3.6990 -6.5151 39 1 3.8604 -1.6659 0.7993 40 1 3.9074 0.1186 0.6753 41 1 4.8725 -0.2258 2.8522 42 1 3.7849 -1.6093 3.2087 43 1 2.3909 -0.9471 4.9296 44 1 1.6513 0.6673 5.0520 45 1 3.8948 2.6755 5.2368 46 1 3.0781 2.1880 6.7547 47 1 5.9351 2.5919 6.3081 48 1 5.1182 2.1021 7.8260 49 1 0.9106 -0.7011 2.9954 50 1 0.9916 0.8782 2.1684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495872596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:28 Heat of formation + Delta-G solvation = -104.795452 kcal Electronic energy + Delta-G solvation = -30631.597183 eV Core-core repulsion = 26465.976220 eV Total energy + Delta-G solvation = -4165.620963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.48973 -41.34190 -39.60118 -38.24786 -36.82249 -36.55810 -34.96118 -34.28093 -31.83490 -30.60985 -30.19561 -29.29215 -27.59225 -26.98852 -25.31069 -24.47308 -23.63824 -22.45421 -21.91398 -20.98097 -19.95803 -19.14842 -18.51925 -18.22902 -18.00620 -17.79416 -17.52492 -16.65970 -16.26353 -16.08438 -15.87604 -15.76075 -15.04387 -15.01799 -14.89108 -14.77470 -14.63951 -14.51229 -14.24826 -13.99897 -13.71458 -13.57977 -13.35320 -13.32582 -13.17299 -13.03102 -12.95979 -12.67766 -12.46229 -12.38131 -12.21720 -12.12252 -12.04362 -11.94919 -11.75071 -11.67277 -11.58636 -11.50894 -10.84855 -10.50465 -9.87726 -9.39669 -9.18554 -8.35442 -6.39907 1.29649 1.34740 1.42363 1.48938 1.67481 1.79749 2.24122 2.29088 2.65500 2.97450 2.98869 3.41072 3.50427 3.56289 3.76957 3.79593 3.92330 4.03094 4.06236 4.13947 4.24397 4.31368 4.39799 4.46698 4.53020 4.58769 4.63322 4.64233 4.71948 4.74651 4.76982 4.84338 4.85913 4.89166 4.94801 4.95815 4.97472 5.04218 5.13741 5.29991 5.31623 5.44764 5.48681 5.61169 5.94146 6.11233 6.24694 6.38386 6.61273 6.72617 6.99025 7.20922 7.45966 8.81341 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.002280 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.603914 B =12278.954719 C =12705.186917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.075 3.925 3 H 0.093 0.907 4 C 0.498 3.502 5 O -0.581 6.581 6 N -0.609 5.609 7 C 0.067 3.933 8 C 0.224 3.776 9 C -0.533 4.533 10 H 0.031 0.969 11 C 0.011 3.989 12 N -0.943 5.943 13 Si 0.946 3.054 14 H -0.281 1.281 15 H -0.272 1.272 16 H -0.239 1.239 17 N -0.533 5.533 18 C 0.056 3.944 19 C -0.108 4.108 20 C -0.114 4.114 21 H 0.102 0.898 22 C 0.159 3.841 23 N -0.623 5.623 24 C 0.063 3.937 25 C 0.033 3.967 26 O -0.358 6.358 27 C 0.632 3.368 28 O -0.575 6.575 29 C 0.051 3.949 30 H 0.084 0.916 31 H 0.033 0.967 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.050 0.950 37 H 0.013 0.987 38 H 0.268 0.732 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.132 0.868 45 H 0.114 0.886 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.131 0.869 49 H 0.086 0.914 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 23.790 26.863 36.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.037 4.037 3 H 0.110 0.890 4 C 0.286 3.714 5 O -0.460 6.460 6 N -0.341 5.341 7 C -0.074 4.074 8 C 0.102 3.898 9 C -0.572 4.572 10 H 0.049 0.951 11 C -0.187 4.187 12 N -0.584 5.584 13 Si 0.769 3.231 14 H -0.207 1.207 15 H -0.197 1.197 16 H -0.162 1.162 17 N -0.259 5.259 18 C -0.072 4.072 19 C -0.147 4.147 20 C -0.134 4.134 21 H 0.120 0.880 22 C 0.038 3.962 23 N -0.370 5.370 24 C -0.058 4.058 25 C -0.041 4.041 26 O -0.268 6.268 27 C 0.386 3.614 28 O -0.463 6.463 29 C -0.076 4.076 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.150 0.850 45 H 0.132 0.868 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.149 0.851 49 H 0.105 0.895 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.310 21.983 26.673 34.832 hybrid contribution 0.906 -0.404 -1.139 1.511 sum 5.216 21.579 25.533 33.835 Atomic orbital electron populations 1.21961 0.90620 1.02296 1.04846 1.21765 0.98119 0.96063 0.87743 0.88953 1.21279 0.78779 0.85824 0.85521 1.90631 1.44871 1.23726 1.86783 1.47917 1.62759 1.17586 1.05796 1.22198 0.99685 0.81147 1.04414 1.19291 0.94593 0.92164 0.83787 1.21543 0.97646 1.27528 1.10472 0.95076 1.25836 1.00568 0.94257 0.98081 1.70043 1.32815 1.30461 1.25033 0.85738 0.79341 0.80142 0.77840 1.20660 1.19733 1.16186 1.63232 1.09045 1.52075 1.01510 1.22827 0.87568 0.99928 0.96883 1.22589 0.98619 0.99829 0.93613 1.22822 0.95140 1.00068 0.95379 0.87992 1.21424 0.86076 1.01024 0.87665 1.48158 1.20039 1.12744 1.56020 1.23179 0.98415 0.83436 1.00796 1.24842 0.95782 0.78496 1.04939 1.87302 1.43307 1.27809 1.68416 1.18807 0.79933 0.85164 0.77501 1.91032 1.79820 1.15428 1.60016 1.22965 0.96538 0.99094 0.89034 0.89793 0.94748 0.87552 0.90623 0.91519 0.88203 0.93256 0.96902 0.92279 0.93629 0.94165 0.92249 0.92575 0.91292 0.84984 0.86756 0.85923 0.85677 0.85129 0.89548 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.88 71.98 0.64 -2.77 16 2 C 0.07 2.13 1.22 44.17 0.05 2.18 16 3 H 0.09 1.97 7.47 -2.38 -0.02 1.95 16 4 C 0.50 20.97 6.49 87.66 0.57 21.54 16 5 O -0.58 -30.96 14.31 -3.05 -0.04 -31.01 16 6 N -0.61 -25.16 2.86 -851.12 -2.43 -27.59 16 7 C 0.07 1.87 10.02 127.77 1.28 3.15 16 8 C 0.22 11.28 4.29 85.63 0.37 11.64 16 9 C -0.53 -32.04 9.94 25.60 0.25 -31.78 16 10 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 11 C 0.01 0.64 5.47 84.66 0.46 1.11 16 12 N -0.94 -60.64 13.96 21.45 0.30 -60.34 16 13 Si 0.95 45.82 27.47 68.60 1.88 47.70 16 14 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 15 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 16 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 17 N -0.53 -15.39 4.78 -864.73 -4.13 -19.52 16 18 C 0.06 1.74 5.44 86.77 0.47 2.21 16 19 C -0.11 -2.75 5.49 31.98 0.18 -2.57 16 20 C -0.11 -1.68 3.17 -9.61 -0.03 -1.71 16 21 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 22 C 0.16 1.84 5.33 86.38 0.46 2.30 16 23 N -0.62 -7.81 2.92 -951.45 -2.78 -10.58 16 24 C 0.06 0.10 7.69 86.63 0.67 0.77 16 25 C 0.03 0.12 8.25 72.35 0.60 0.71 16 26 O -0.36 -6.59 11.10 -47.27 -0.52 -7.12 16 27 C 0.63 14.30 8.47 129.91 1.10 15.40 16 28 O -0.57 -19.29 16.51 19.63 0.32 -18.96 16 29 C 0.05 0.86 5.61 86.65 0.49 1.34 16 30 H 0.08 1.82 5.72 -2.39 -0.01 1.81 16 31 H 0.03 1.11 8.12 -2.38 -0.02 1.09 16 32 H 0.11 1.67 6.29 -2.39 -0.02 1.66 16 33 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 35 H 0.10 2.10 4.09 -2.39 -0.01 2.09 16 36 H 0.05 2.27 7.13 -2.39 -0.02 2.25 16 37 H 0.01 0.71 6.79 -2.39 -0.02 0.69 16 38 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 39 H 0.05 1.86 7.15 -2.39 -0.02 1.84 16 40 H 0.04 1.19 7.76 -2.38 -0.02 1.17 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.76 7.52 -2.39 -0.02 1.74 16 43 H 0.07 1.20 7.78 -2.39 -0.02 1.18 16 44 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 45 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 46 H 0.12 -0.47 8.14 -2.38 -0.02 -0.49 16 47 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 48 H 0.13 -0.22 8.14 -2.39 -0.02 -0.23 16 49 H 0.09 1.40 7.82 -2.39 -0.02 1.38 16 50 H 0.09 0.98 6.42 -2.38 -0.02 0.97 16 Total: -1.00 -97.09 390.06 1.04 -96.06 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.88 Total: 7.85 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 7.55 Total: 23.51 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -9.04 Total: -118.04 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -0.24 Total: -57.08 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.70 kcal Total: -97.09 1.04 -96.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495872596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.737 kcal (2) G-P(sol) polarization free energy of solvation -97.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds