Wall clock time and date at job start Sat Apr 11 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46644 * 2 1 4 4 C 1.50699 * 109.47604 * 120.00002 * 2 1 3 5 5 O 1.21275 * 119.99898 * 120.00110 * 4 2 1 6 6 N 1.34781 * 119.99742 * 300.00214 * 4 2 1 7 7 C 1.46504 * 119.99961 * 359.97438 * 6 4 2 8 8 C 1.46500 * 119.99896 * 179.97438 * 6 4 2 9 9 C 1.50704 * 109.46828 * 90.00362 * 8 6 4 10 10 H 1.08002 * 119.99832 * 359.97438 * 9 8 6 11 11 C 1.37870 * 120.00165 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00097 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99981 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47348 * 89.99572 * 13 11 9 15 15 H 1.48496 * 109.47354 * 209.99762 * 13 11 9 16 16 H 1.48506 * 109.47150 * 330.00034 * 13 11 9 17 17 N 1.46903 * 109.47334 * 240.00541 * 2 1 3 18 18 C 1.47895 * 110.99838 * 53.53804 * 17 2 1 19 19 C 1.54002 * 107.05449 * 145.85060 * 18 17 2 20 20 C 1.54594 * 105.13818 * 358.77151 * 19 18 17 21 21 H 1.09001 * 110.72247 * 96.58314 * 20 19 18 22 22 C 1.53007 * 110.72250 * 219.68753 * 20 19 18 23 23 N 1.46504 * 109.47042 * 293.54786 * 22 20 19 24 24 C 1.47091 * 125.55987 * 90.00117 * 23 22 20 25 25 C 1.54087 * 103.90727 * 179.90586 * 24 23 22 26 26 O 1.46046 * 103.84470 * 0.11478 * 25 24 23 27 27 C 1.33770 * 109.50745 * 359.87805 * 26 25 24 28 28 O 1.21510 * 123.06732 * 180.02562 * 27 26 25 29 29 C 1.48533 * 111.00102 * 170.94107 * 17 2 1 30 30 H 1.08996 * 109.47003 * 307.04524 * 1 2 3 31 31 H 1.08995 * 109.47145 * 67.04998 * 1 2 3 32 32 H 1.08999 * 109.46318 * 187.04921 * 1 2 3 33 33 H 1.09006 * 109.47006 * 89.99940 * 7 6 4 34 34 H 1.08994 * 109.46651 * 209.99732 * 7 6 4 35 35 H 1.08992 * 109.46843 * 329.99831 * 7 6 4 36 36 H 1.08996 * 109.47320 * 210.00285 * 8 6 4 37 37 H 1.09000 * 109.47026 * 330.00621 * 8 6 4 38 38 H 0.97006 * 119.99926 * 179.97438 * 12 11 9 39 39 H 1.08997 * 109.92261 * 26.49643 * 18 17 2 40 40 H 1.08998 * 109.92040 * 265.19594 * 18 17 2 41 41 H 1.09007 * 110.30477 * 239.86129 * 19 18 17 42 42 H 1.09000 * 110.31024 * 117.68978 * 19 18 17 43 43 H 1.08998 * 109.46675 * 173.54910 * 22 20 19 44 44 H 1.08996 * 109.46874 * 53.54472 * 22 20 19 45 45 H 1.09007 * 110.56407 * 298.55198 * 24 23 22 46 46 H 1.08997 * 110.56424 * 61.25613 * 24 23 22 47 47 H 1.09003 * 110.52274 * 118.70295 * 25 24 23 48 48 H 1.09007 * 110.51903 * 241.44148 * 25 24 23 49 49 H 1.08997 * 110.66760 * 81.83735 * 29 17 2 50 50 H 1.09010 * 110.66601 * 318.70679 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1191 6 7 1.7069 -0.2499 2.4546 7 6 0.8650 0.9415 2.5890 8 6 2.1948 -0.9408 3.6507 9 6 3.5225 -0.3576 4.0611 10 1 3.9593 0.4468 3.4879 11 6 4.1796 -0.8511 5.1682 12 7 5.3384 -0.3425 5.5260 13 14 3.4245 -2.2429 6.1591 14 1 3.8846 -3.5452 5.6137 15 1 3.8444 -2.1246 7.5785 16 1 1.9440 -2.1656 6.0728 17 7 2.0197 -0.6924 -1.1995 18 6 1.4228 -0.1172 -2.4243 19 6 2.4910 -0.2024 -3.5303 20 6 3.7293 -0.8281 -2.8483 21 1 3.7663 -1.9027 -3.0271 22 6 5.0140 -0.1554 -3.3364 23 7 5.2145 -0.4575 -4.7559 24 6 4.7074 0.3431 -5.8808 25 6 5.2020 -0.4151 -7.1277 26 8 5.9281 -1.5566 -6.5774 27 6 5.8901 -1.5081 -5.2411 28 8 6.4189 -2.3412 -4.5321 29 6 3.4882 -0.5260 -1.3479 30 1 -0.3633 0.6191 0.8202 31 1 -0.3633 0.4007 -0.9463 32 1 -0.3632 -1.0199 0.1261 33 1 -0.1831 0.6439 2.6221 34 1 1.1228 1.4666 3.5086 35 1 1.0289 1.6002 1.7362 36 1 1.4768 -0.8153 4.4611 37 1 2.3157 -2.0020 3.4334 38 1 5.8005 -0.6895 6.3051 39 1 1.1500 0.9238 -2.2509 40 1 0.5426 -0.6914 -2.7134 41 1 2.7282 0.7935 -3.9047 42 1 2.1440 -0.8403 -4.3431 43 1 5.8611 -0.5301 -2.7620 44 1 4.9327 0.9233 -3.2025 45 1 3.6182 0.3816 -5.8631 46 1 5.1255 1.3494 -5.8537 47 1 4.3581 -0.7523 -7.7297 48 1 5.8671 0.2144 -7.7189 49 1 4.0217 -1.2404 -0.7210 50 1 3.7859 0.4950 -1.1084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495872597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:33 Heat of formation + Delta-G solvation = -74.616350 kcal Electronic energy + Delta-G solvation = -30687.515455 eV Core-core repulsion = 26523.203156 eV Total energy + Delta-G solvation = -4164.312299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79024 -40.00481 -38.38204 -37.34082 -36.00566 -34.92187 -33.66004 -32.43769 -30.84827 -29.49593 -29.29990 -28.12631 -26.19044 -25.70259 -24.21300 -23.88420 -22.21522 -21.60799 -20.84600 -19.87152 -18.52437 -17.66403 -17.47759 -17.07288 -16.94366 -16.82023 -16.03358 -15.74228 -15.09002 -14.88268 -14.80230 -14.47546 -14.41305 -13.96752 -13.90835 -13.58088 -13.53766 -13.14120 -13.03082 -12.80540 -12.65067 -12.41931 -12.33167 -12.15877 -11.99496 -11.82822 -11.53073 -11.38402 -11.23011 -11.15230 -11.01327 -10.94908 -10.87191 -10.76021 -10.60606 -10.49699 -10.12530 -9.53116 -9.20517 -8.94320 -8.57563 -8.24868 -7.66931 -6.07770 -4.06434 2.14446 2.53668 3.14019 3.30896 3.36821 3.38475 3.39532 3.59681 3.74204 4.10748 4.22634 4.27841 4.41232 4.51273 4.56461 4.69316 4.78810 4.86418 4.96194 4.99455 5.08782 5.14648 5.18914 5.23764 5.26704 5.34953 5.46269 5.50606 5.55285 5.59972 5.66681 5.70865 5.73435 5.82598 5.89451 6.03327 6.07634 6.19859 6.23807 6.33319 6.68576 6.92775 6.93895 7.05600 7.08185 7.37247 7.62502 7.81980 8.27784 8.48195 8.93941 9.04429 9.52935 11.05623 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.002643 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.242884 B =10592.236509 C =11876.080673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 H 0.062 0.938 4 C 0.513 3.487 5 O -0.520 6.520 6 N -0.599 5.599 7 C 0.082 3.918 8 C 0.217 3.783 9 C -0.528 4.528 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.492 5.492 18 C 0.037 3.963 19 C -0.122 4.122 20 C -0.110 4.110 21 H 0.091 0.909 22 C 0.155 3.845 23 N -0.627 5.627 24 C 0.062 3.938 25 C 0.042 3.958 26 O -0.332 6.332 27 C 0.640 3.360 28 O -0.515 6.515 29 C 0.047 3.953 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.264 0.736 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.105 0.895 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.586 8.471 -24.815 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.055 4.055 3 H 0.080 0.920 4 C 0.298 3.702 5 O -0.395 6.395 6 N -0.332 5.332 7 C -0.062 4.062 8 C 0.096 3.904 9 C -0.566 4.566 10 H 0.091 0.909 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.703 3.297 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.216 5.216 18 C -0.091 4.091 19 C -0.161 4.161 20 C -0.131 4.131 21 H 0.109 0.891 22 C 0.034 3.966 23 N -0.375 5.375 24 C -0.061 4.061 25 C -0.033 4.033 26 O -0.242 6.242 27 C 0.394 3.606 28 O -0.398 6.398 29 C -0.081 4.081 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.123 0.877 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.822 6.766 -24.407 26.820 hybrid contribution -0.241 0.556 0.543 0.814 sum -9.063 7.322 -23.864 26.556 Atomic orbital electron populations 1.22077 0.92613 1.03630 1.02713 1.21779 0.96869 0.95987 0.90847 0.92000 1.20043 0.81041 0.85214 0.83853 1.90661 1.36860 1.26134 1.85869 1.47786 1.50362 1.28401 1.06662 1.21796 0.93647 0.88012 1.02703 1.19648 0.95233 0.93750 0.81744 1.21311 1.03120 1.20260 1.11930 0.90900 1.24854 0.94628 0.96455 0.97081 1.69896 1.14795 1.42397 1.26569 0.86845 0.80015 0.83350 0.79450 1.19846 1.21108 1.19082 1.64540 1.05010 1.52041 1.00036 1.22883 0.98065 0.97989 0.90145 1.22493 0.95229 1.00339 0.97995 1.22561 0.93495 1.01722 0.95290 0.89087 1.21395 0.98661 1.00172 0.76374 1.48053 1.55783 1.26317 1.07302 1.22851 1.01501 0.96595 0.85196 1.24325 0.97310 0.85784 0.95895 1.87348 1.70742 1.46378 1.19727 1.18522 0.78836 0.82172 0.81089 1.91096 1.49920 1.41857 1.56974 1.23272 0.88980 1.00903 0.94965 0.90562 0.91913 0.91432 0.93410 0.90688 0.92290 0.95298 0.94526 0.92569 0.93735 0.90376 0.91673 0.91290 0.88684 0.89613 0.88960 0.89074 0.87660 0.87668 0.87692 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.66 37.16 0.32 -1.44 16 2 C 0.06 0.85 1.42 -68.86 -0.10 0.75 16 3 H 0.06 0.85 7.18 -51.92 -0.37 0.47 16 4 C 0.51 10.46 6.87 -10.98 -0.08 10.39 16 5 O -0.52 -12.92 14.36 5.56 0.08 -12.84 16 6 N -0.60 -12.26 2.86 -182.95 -0.52 -12.78 16 7 C 0.08 1.23 8.79 59.85 0.53 1.75 16 8 C 0.22 5.34 4.23 -5.19 -0.02 5.31 16 9 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 10 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 13 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 14 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 16 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 17 N -0.49 -7.07 4.81 -223.88 -1.08 -8.15 16 18 C 0.04 0.37 5.22 -2.75 -0.01 0.36 16 19 C -0.12 -1.04 5.34 -25.37 -0.14 -1.17 16 20 C -0.11 -1.25 3.31 -88.76 -0.29 -1.55 16 21 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 22 C 0.15 1.52 5.35 -4.04 -0.02 1.50 16 23 N -0.63 -5.82 2.83 -178.84 -0.51 -6.33 16 24 C 0.06 0.28 7.29 -3.15 -0.02 0.25 16 25 C 0.04 0.18 8.25 37.73 0.31 0.49 16 26 O -0.33 -3.53 11.10 -37.83 -0.42 -3.95 16 27 C 0.64 8.32 8.85 53.71 0.48 8.79 16 28 O -0.51 -9.21 17.54 -19.12 -0.34 -9.54 16 29 C 0.05 0.68 5.28 -1.90 -0.01 0.67 16 30 H 0.08 0.78 4.75 -51.93 -0.25 0.53 16 31 H 0.06 0.57 6.42 -51.93 -0.33 0.24 16 32 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.05 0.59 7.11 -51.93 -0.37 0.22 16 34 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 35 H 0.06 0.73 5.93 -51.93 -0.31 0.42 16 36 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 37 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.04 0.39 7.25 -51.93 -0.38 0.02 16 40 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.06 0.41 7.16 -51.93 -0.37 0.04 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.09 1.12 7.93 -51.93 -0.41 0.71 16 44 H 0.09 0.64 8.07 -51.93 -0.42 0.22 16 45 H 0.09 0.28 6.83 -51.93 -0.35 -0.08 16 46 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.11 0.21 8.14 -51.92 -0.42 -0.21 16 49 H 0.10 1.95 6.86 -51.93 -0.36 1.59 16 50 H 0.04 0.59 7.77 -51.92 -0.40 0.18 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -39.00 388.58 -8.33 -47.33 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -8.01 Total: -2.29 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 0.50 Total: 12.60 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -1.33 Total: -54.33 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.68 Total: -26.33 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.00 -8.33 -47.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495872597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.283 kcal (2) G-P(sol) polarization free energy of solvation -39.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds