Wall clock time and date at job start Sat Apr 11 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46644 * 2 1 4 4 C 1.50699 * 109.47604 * 120.00002 * 2 1 3 5 5 O 1.21275 * 119.99898 * 120.00110 * 4 2 1 6 6 N 1.34781 * 119.99742 * 300.00214 * 4 2 1 7 7 C 1.46504 * 119.99961 * 359.97438 * 6 4 2 8 8 C 1.46500 * 119.99896 * 179.97438 * 6 4 2 9 9 C 1.50704 * 109.46828 * 90.00362 * 8 6 4 10 10 H 1.08002 * 119.99832 * 359.97438 * 9 8 6 11 11 C 1.37870 * 120.00165 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00097 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99981 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47348 * 89.99572 * 13 11 9 15 15 H 1.48496 * 109.47354 * 209.99762 * 13 11 9 16 16 H 1.48506 * 109.47150 * 330.00034 * 13 11 9 17 17 N 1.46903 * 109.47334 * 240.00541 * 2 1 3 18 18 C 1.47895 * 110.99838 * 53.53804 * 17 2 1 19 19 C 1.54002 * 107.05449 * 145.85060 * 18 17 2 20 20 C 1.54594 * 105.13818 * 358.77151 * 19 18 17 21 21 H 1.09001 * 110.72247 * 96.58314 * 20 19 18 22 22 C 1.53007 * 110.72250 * 219.68753 * 20 19 18 23 23 N 1.46504 * 109.47042 * 293.54786 * 22 20 19 24 24 C 1.47091 * 125.55987 * 90.00117 * 23 22 20 25 25 C 1.54087 * 103.90727 * 179.90586 * 24 23 22 26 26 O 1.46046 * 103.84470 * 0.11478 * 25 24 23 27 27 C 1.33770 * 109.50745 * 359.87805 * 26 25 24 28 28 O 1.21510 * 123.06732 * 180.02562 * 27 26 25 29 29 C 1.48533 * 111.00102 * 170.94107 * 17 2 1 30 30 H 1.08996 * 109.47003 * 307.04524 * 1 2 3 31 31 H 1.08995 * 109.47145 * 67.04998 * 1 2 3 32 32 H 1.08999 * 109.46318 * 187.04921 * 1 2 3 33 33 H 1.09006 * 109.47006 * 89.99940 * 7 6 4 34 34 H 1.08994 * 109.46651 * 209.99732 * 7 6 4 35 35 H 1.08992 * 109.46843 * 329.99831 * 7 6 4 36 36 H 1.08996 * 109.47320 * 210.00285 * 8 6 4 37 37 H 1.09000 * 109.47026 * 330.00621 * 8 6 4 38 38 H 0.97006 * 119.99926 * 179.97438 * 12 11 9 39 39 H 1.08997 * 109.92261 * 26.49643 * 18 17 2 40 40 H 1.08998 * 109.92040 * 265.19594 * 18 17 2 41 41 H 1.09007 * 110.30477 * 239.86129 * 19 18 17 42 42 H 1.09000 * 110.31024 * 117.68978 * 19 18 17 43 43 H 1.08998 * 109.46675 * 173.54910 * 22 20 19 44 44 H 1.08996 * 109.46874 * 53.54472 * 22 20 19 45 45 H 1.09007 * 110.56407 * 298.55198 * 24 23 22 46 46 H 1.08997 * 110.56424 * 61.25613 * 24 23 22 47 47 H 1.09003 * 110.52274 * 118.70295 * 25 24 23 48 48 H 1.09007 * 110.51903 * 241.44148 * 25 24 23 49 49 H 1.08997 * 110.66760 * 81.83735 * 29 17 2 50 50 H 1.09010 * 110.66601 * 318.70679 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1191 6 7 1.7069 -0.2499 2.4546 7 6 0.8650 0.9415 2.5890 8 6 2.1948 -0.9408 3.6507 9 6 3.5225 -0.3576 4.0611 10 1 3.9593 0.4468 3.4879 11 6 4.1796 -0.8511 5.1682 12 7 5.3384 -0.3425 5.5260 13 14 3.4245 -2.2429 6.1591 14 1 3.8846 -3.5452 5.6137 15 1 3.8444 -2.1246 7.5785 16 1 1.9440 -2.1656 6.0728 17 7 2.0197 -0.6924 -1.1995 18 6 1.4228 -0.1172 -2.4243 19 6 2.4910 -0.2024 -3.5303 20 6 3.7293 -0.8281 -2.8483 21 1 3.7663 -1.9027 -3.0271 22 6 5.0140 -0.1554 -3.3364 23 7 5.2145 -0.4575 -4.7559 24 6 4.7074 0.3431 -5.8808 25 6 5.2020 -0.4151 -7.1277 26 8 5.9281 -1.5566 -6.5774 27 6 5.8901 -1.5081 -5.2411 28 8 6.4189 -2.3412 -4.5321 29 6 3.4882 -0.5260 -1.3479 30 1 -0.3633 0.6191 0.8202 31 1 -0.3633 0.4007 -0.9463 32 1 -0.3632 -1.0199 0.1261 33 1 -0.1831 0.6439 2.6221 34 1 1.1228 1.4666 3.5086 35 1 1.0289 1.6002 1.7362 36 1 1.4768 -0.8153 4.4611 37 1 2.3157 -2.0020 3.4334 38 1 5.8005 -0.6895 6.3051 39 1 1.1500 0.9238 -2.2509 40 1 0.5426 -0.6914 -2.7134 41 1 2.7282 0.7935 -3.9047 42 1 2.1440 -0.8403 -4.3431 43 1 5.8611 -0.5301 -2.7620 44 1 4.9327 0.9233 -3.2025 45 1 3.6182 0.3816 -5.8631 46 1 5.1255 1.3494 -5.8537 47 1 4.3581 -0.7523 -7.7297 48 1 5.8671 0.2144 -7.7189 49 1 4.0217 -1.2404 -0.7210 50 1 3.7859 0.4950 -1.1084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495872597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:32 Heat of formation + Delta-G solvation = -105.961410 kcal Electronic energy + Delta-G solvation = -30688.874679 eV Core-core repulsion = 26523.203156 eV Total energy + Delta-G solvation = -4165.671523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.55097 -41.28403 -39.60977 -38.34651 -36.90407 -36.60920 -34.99722 -34.26526 -31.69591 -30.64469 -30.11531 -29.61932 -27.58262 -26.59375 -25.56040 -24.51323 -23.74619 -22.47804 -21.97760 -20.76837 -19.98030 -19.15241 -18.39764 -18.24752 -18.14737 -17.76753 -17.33603 -16.81312 -16.51941 -16.42020 -15.81395 -15.59497 -15.19903 -15.06342 -14.88937 -14.75032 -14.61205 -14.40849 -14.15514 -13.91995 -13.76054 -13.68188 -13.54076 -13.17593 -13.12382 -13.03744 -12.87913 -12.76727 -12.49385 -12.35317 -12.15208 -12.13031 -12.00522 -11.87122 -11.77024 -11.74675 -11.65042 -11.51031 -10.85280 -10.49615 -9.92935 -9.36735 -9.30811 -8.36212 -6.40730 1.29821 1.35116 1.39687 1.42668 1.59331 1.84665 2.23066 2.28998 2.60512 2.98554 3.01035 3.37968 3.51739 3.60122 3.70613 3.83964 3.87125 4.03227 4.07395 4.13827 4.27548 4.32578 4.39209 4.41489 4.52370 4.57021 4.62827 4.65182 4.71962 4.74806 4.80647 4.82977 4.85536 4.88235 4.94143 4.97148 4.98609 5.05387 5.17186 5.25570 5.30354 5.39456 5.44704 5.62209 5.89230 6.05552 6.23609 6.32764 6.60017 6.74335 6.90575 7.20671 7.48618 8.80733 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.002643 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.242884 B =10592.236509 C =11876.080673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 H 0.081 0.919 4 C 0.498 3.502 5 O -0.581 6.581 6 N -0.608 5.608 7 C 0.075 3.925 8 C 0.225 3.775 9 C -0.533 4.533 10 H 0.028 0.972 11 C 0.010 3.990 12 N -0.945 5.945 13 Si 0.946 3.054 14 H -0.281 1.281 15 H -0.273 1.273 16 H -0.236 1.236 17 N -0.520 5.520 18 C 0.036 3.964 19 C -0.109 4.109 20 C -0.101 4.101 21 H 0.051 0.949 22 C 0.158 3.842 23 N -0.619 5.619 24 C 0.059 3.941 25 C 0.034 3.966 26 O -0.352 6.352 27 C 0.633 3.367 28 O -0.586 6.586 29 C 0.049 3.951 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.012 0.988 38 H 0.268 0.732 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.044 0.956 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.530 11.292 -27.185 32.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.044 4.044 3 H 0.099 0.901 4 C 0.286 3.714 5 O -0.460 6.460 6 N -0.340 5.340 7 C -0.067 4.067 8 C 0.102 3.898 9 C -0.571 4.571 10 H 0.047 0.953 11 C -0.188 4.188 12 N -0.585 5.585 13 Si 0.769 3.231 14 H -0.207 1.207 15 H -0.198 1.198 16 H -0.159 1.159 17 N -0.246 5.246 18 C -0.090 4.090 19 C -0.147 4.147 20 C -0.121 4.121 21 H 0.069 0.931 22 C 0.037 3.963 23 N -0.365 5.365 24 C -0.062 4.062 25 C -0.039 4.039 26 O -0.263 6.263 27 C 0.388 3.612 28 O -0.475 6.475 29 C -0.080 4.080 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.142 0.858 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.150 0.850 48 H 0.150 0.850 49 H 0.062 0.938 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.850 9.682 -26.837 31.291 hybrid contribution 1.025 -0.239 1.171 1.574 sum -11.825 9.443 -25.667 29.795 Atomic orbital electron populations 1.22089 0.89456 1.03253 1.05379 1.21749 0.99023 0.95509 0.88084 0.90140 1.21279 0.79874 0.84769 0.85439 1.90636 1.39466 1.29066 1.86880 1.47916 1.50768 1.29764 1.05588 1.22150 0.94513 0.86334 1.03692 1.19295 0.93699 0.92596 0.84198 1.21543 1.05063 1.19156 1.11383 0.95347 1.25841 0.95066 0.99332 0.98513 1.70045 1.16578 1.44362 1.27565 0.85735 0.80791 0.78710 0.77828 1.20694 1.19780 1.15940 1.64421 1.04705 1.53716 1.01721 1.23025 0.98379 0.99435 0.88205 1.22498 0.92518 1.02233 0.97467 1.22355 0.96140 0.99893 0.93738 0.93072 1.21319 0.96559 1.01812 0.76608 1.48076 1.54622 1.25729 1.08093 1.23301 1.03185 0.97010 0.82727 1.24889 0.98422 0.84371 0.96193 1.87301 1.71571 1.49059 1.18321 1.18790 0.78613 0.82200 0.81633 1.91028 1.52910 1.44574 1.58947 1.23044 0.89351 0.99534 0.96063 0.88794 0.88439 0.93178 0.89745 0.91646 0.89218 0.93076 0.96942 0.92288 0.90921 0.89525 0.87866 0.90144 0.92242 0.85776 0.86286 0.86028 0.85043 0.84950 0.93757 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.66 71.98 0.62 -2.15 16 2 C 0.07 1.90 1.42 44.17 0.06 1.96 16 3 H 0.08 1.95 7.18 -2.38 -0.02 1.93 16 4 C 0.50 20.78 6.87 87.66 0.60 21.38 16 5 O -0.58 -30.96 14.36 -3.02 -0.04 -31.00 16 6 N -0.61 -24.88 2.86 -851.13 -2.43 -27.31 16 7 C 0.07 2.04 8.79 127.77 1.12 3.17 16 8 C 0.22 11.24 4.23 85.63 0.36 11.60 16 9 C -0.53 -32.00 9.94 25.60 0.25 -31.75 16 10 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 11 C 0.01 0.63 5.47 84.65 0.46 1.09 16 12 N -0.95 -60.95 13.96 21.44 0.30 -60.65 16 13 Si 0.95 45.81 27.47 68.60 1.88 47.70 16 14 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 17 N -0.52 -14.58 4.81 -862.22 -4.15 -18.72 16 18 C 0.04 0.59 5.22 86.45 0.45 1.04 16 19 C -0.11 -1.44 5.34 31.48 0.17 -1.27 16 20 C -0.10 -2.31 3.31 -9.59 -0.03 -2.34 16 21 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 22 C 0.16 3.09 5.35 86.38 0.46 3.56 16 23 N -0.62 -10.80 2.83 -951.45 -2.69 -13.49 16 24 C 0.06 0.27 7.29 86.63 0.63 0.90 16 25 C 0.03 0.18 8.25 72.35 0.60 0.78 16 26 O -0.35 -7.35 11.10 -47.30 -0.53 -7.88 16 27 C 0.63 17.13 8.85 129.91 1.15 18.28 16 28 O -0.59 -23.09 17.54 19.65 0.34 -22.74 16 29 C 0.05 1.48 5.28 86.65 0.46 1.94 16 30 H 0.09 1.46 4.75 -2.39 -0.01 1.44 16 31 H 0.10 1.23 6.42 -2.39 -0.02 1.21 16 32 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 33 H 0.08 1.72 7.11 -2.38 -0.02 1.70 16 34 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 35 H 0.09 1.88 5.93 -2.39 -0.01 1.87 16 36 H 0.05 2.32 7.13 -2.39 -0.02 2.31 16 37 H 0.01 0.68 6.85 -2.39 -0.02 0.67 16 38 H 0.27 16.08 8.31 -92.70 -0.77 15.31 16 39 H 0.07 0.82 7.25 -2.39 -0.02 0.80 16 40 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 41 H 0.10 0.63 7.16 -2.38 -0.02 0.62 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.06 1.58 7.93 -2.39 -0.02 1.56 16 44 H 0.12 1.48 8.07 -2.39 -0.02 1.46 16 45 H 0.12 -0.01 6.83 -2.38 -0.02 -0.03 16 46 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 47 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.13 -0.01 8.14 -2.38 -0.02 -0.03 16 49 H 0.04 1.87 6.86 -2.39 -0.02 1.85 16 50 H 0.05 1.45 7.77 -2.38 -0.02 1.43 16 Total: -1.00 -98.80 388.58 0.95 -97.85 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.88 Total: 8.06 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 7.38 Total: 28.19 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -8.97 Total: -120.17 kcal Atomic # 8 Polarization: -61.40 SS G_CDS: -0.22 Total: -61.62 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.70 kcal Total: -98.80 0.95 -97.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495872597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.114 kcal (2) G-P(sol) polarization free energy of solvation -98.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds