Wall clock time and date at job start Sat Apr 11 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46977 * 2 1 4 4 C 1.50702 * 109.46945 * 119.99816 * 2 1 3 5 5 O 1.21281 * 119.99799 * 100.15175 * 4 2 1 6 6 N 1.34774 * 120.00012 * 280.14848 * 4 2 1 7 7 C 1.46497 * 120.00137 * 5.13285 * 6 4 2 8 8 C 1.46501 * 119.99874 * 185.12961 * 6 4 2 9 9 C 1.50702 * 109.47017 * 270.00395 * 8 6 4 10 10 H 1.07998 * 120.00206 * 359.97438 * 9 8 6 11 11 C 1.37878 * 119.99896 * 180.02562 * 9 8 6 12 12 N 1.31517 * 120.00345 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 120.00078 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46965 * 90.00363 * 13 11 9 15 15 H 1.48496 * 109.47142 * 210.00277 * 13 11 9 16 16 H 1.48498 * 109.46969 * 330.00457 * 13 11 9 17 17 N 1.46893 * 109.47037 * 239.99881 * 2 1 3 18 18 C 1.48534 * 111.00273 * 56.48644 * 17 2 1 19 19 C 1.54931 * 103.23094 * 159.72007 * 18 17 2 20 20 C 1.54603 * 102.92033 * 322.58588 * 19 18 17 21 21 H 1.09002 * 110.38701 * 263.00126 * 20 19 18 22 22 C 1.52996 * 110.30746 * 140.87759 * 20 19 18 23 23 N 1.46497 * 109.47452 * 69.28445 * 22 20 19 24 24 C 1.47091 * 125.55929 * 269.71788 * 23 22 20 25 25 C 1.54083 * 103.77941 * 179.87279 * 24 23 22 26 26 O 1.45703 * 104.00810 * 0.37201 * 25 24 23 27 27 C 1.33779 * 109.47707 * 359.75590 * 26 25 24 28 28 O 1.21507 * 123.07158 * 179.97438 * 27 26 25 29 29 C 1.47910 * 110.99974 * 173.87986 * 17 2 1 30 30 H 1.09003 * 109.47074 * 51.05584 * 1 2 3 31 31 H 1.09003 * 109.46592 * 171.05486 * 1 2 3 32 32 H 1.09001 * 109.46928 * 291.05151 * 1 2 3 33 33 H 1.09001 * 109.46910 * 266.20048 * 7 6 4 34 34 H 1.08997 * 109.47470 * 26.20443 * 7 6 4 35 35 H 1.09000 * 109.47148 * 146.20596 * 7 6 4 36 36 H 1.08999 * 109.47389 * 150.00424 * 8 6 4 37 37 H 1.09007 * 109.47409 * 29.99881 * 8 6 4 38 38 H 0.96998 * 120.00479 * 179.97438 * 12 11 9 39 39 H 1.08997 * 110.66473 * 278.15383 * 18 17 2 40 40 H 1.09002 * 110.66715 * 41.27944 * 18 17 2 41 41 H 1.09005 * 110.72755 * 204.23120 * 19 18 17 42 42 H 1.08997 * 110.72808 * 80.94382 * 19 18 17 43 43 H 1.09002 * 109.46833 * 189.28311 * 22 20 19 44 44 H 1.08997 * 109.47315 * 309.27974 * 22 20 19 45 45 H 1.09006 * 110.56449 * 298.57262 * 24 23 22 46 46 H 1.08996 * 110.56416 * 61.42365 * 24 23 22 47 47 H 1.08995 * 110.73263 * 241.64283 * 25 24 23 48 48 H 1.09001 * 110.43516 * 118.95798 * 25 24 23 49 49 H 1.09004 * 109.91379 * 333.50951 * 29 17 2 50 50 H 1.08994 * 109.91421 * 94.60643 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4090 -1.8608 1.1553 6 7 2.0631 -0.0673 2.4145 7 6 1.5047 1.2822 2.5299 8 6 2.6548 -0.7178 3.5863 9 6 1.5915 -1.4932 4.3208 10 1 0.5765 -1.5003 3.9519 11 6 1.9144 -2.1926 5.4643 12 7 0.9865 -2.8689 6.1056 13 14 3.6699 -2.1797 6.1027 14 1 3.8455 -1.0457 7.0453 15 1 3.9498 -3.4567 6.8070 16 1 4.6098 -2.0265 4.9633 17 7 2.0197 -0.6925 -1.1994 18 6 1.4753 -0.0698 -2.4331 19 6 2.4604 -0.5406 -3.5323 20 6 3.8269 -0.5053 -2.8100 21 1 4.3493 0.4254 -3.0312 22 6 4.6799 -1.7045 -3.2286 23 7 5.0883 -1.5491 -4.6268 24 6 4.3434 -2.0420 -5.7954 25 6 5.2105 -1.6085 -6.9930 26 8 6.3459 -0.9319 -6.3798 27 6 6.2044 -0.9397 -5.0495 28 8 7.0142 -0.4403 -4.2937 29 6 3.4908 -0.5860 -1.3094 30 1 -0.3633 0.6460 -0.7993 31 1 -0.3632 -1.0152 -0.1598 32 1 -0.3633 0.3692 0.9591 33 1 2.2968 2.0167 2.3843 34 1 0.7347 1.4229 1.7714 35 1 1.0673 1.4110 3.5199 36 1 3.0752 0.0390 4.2485 37 1 3.4435 -1.3980 3.2647 38 1 1.2137 -3.3612 6.9098 39 1 0.4687 -0.4353 -2.6365 40 1 1.4817 1.0170 -2.3506 41 1 2.4530 0.1477 -4.3775 42 1 2.2215 -1.5535 -3.8563 43 1 5.5654 -1.7592 -2.5953 44 1 4.0982 -2.6199 -3.1195 45 1 4.2507 -3.1276 -5.7604 46 1 3.3602 -1.5744 -5.8479 47 1 4.6613 -0.9238 -7.6393 48 1 5.5440 -2.4798 -7.5567 49 1 3.8369 0.3147 -0.8024 50 1 3.9607 -1.4646 -0.8674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495872598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:37 Heat of formation + Delta-G solvation = -78.353455 kcal Electronic energy + Delta-G solvation = -30647.828421 eV Core-core repulsion = 26483.354069 eV Total energy + Delta-G solvation = -4164.474352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.86615 -40.01671 -38.41340 -37.42246 -36.03185 -34.85276 -33.65617 -32.43404 -30.85845 -29.47551 -29.37571 -28.25604 -26.05899 -25.78345 -24.21625 -23.91050 -22.24173 -21.63804 -20.74411 -20.24911 -18.39962 -17.76481 -17.60242 -17.12974 -16.93227 -16.63730 -16.26191 -15.60180 -15.20276 -14.92939 -14.70818 -14.48018 -14.30072 -14.20368 -13.99120 -13.51504 -13.46884 -13.30822 -12.97729 -12.80898 -12.51351 -12.34007 -12.31011 -12.23328 -12.07667 -11.74029 -11.56407 -11.46116 -11.37332 -11.16020 -11.11758 -11.06078 -10.91577 -10.85679 -10.74350 -10.50362 -10.08253 -9.51606 -9.24653 -8.92387 -8.57186 -8.31981 -7.66745 -6.06530 -4.04781 2.11098 2.45698 3.11002 3.28235 3.35137 3.36613 3.41164 3.59872 3.71699 4.08746 4.18295 4.26180 4.41643 4.42859 4.49794 4.59752 4.79080 4.85981 4.96215 4.99930 5.08854 5.18066 5.20034 5.23639 5.27661 5.28664 5.46137 5.52539 5.53557 5.59687 5.60355 5.72160 5.78425 5.82652 5.84621 5.92840 6.01542 6.11914 6.15878 6.33385 6.64872 6.85511 6.90424 7.02403 7.02940 7.37258 7.63425 7.74239 8.28064 8.49507 8.96266 9.04437 9.53994 11.06948 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.002516 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.104714 B =11127.987585 C =12030.963963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.058 3.942 3 H 0.058 0.942 4 C 0.511 3.489 5 O -0.517 6.517 6 N -0.601 5.601 7 C 0.077 3.923 8 C 0.218 3.782 9 C -0.525 4.525 10 H 0.074 0.926 11 C 0.071 3.929 12 N -0.898 5.898 13 Si 0.874 3.126 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.264 1.264 17 N -0.489 5.489 18 C 0.036 3.964 19 C -0.114 4.114 20 C -0.116 4.116 21 H 0.079 0.921 22 C 0.156 3.844 23 N -0.626 5.626 24 C 0.062 3.938 25 C 0.041 3.959 26 O -0.331 6.331 27 C 0.640 3.360 28 O -0.520 6.520 29 C 0.045 3.955 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.039 0.961 38 H 0.264 0.736 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.045 0.955 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 6.837 -26.948 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.054 4.054 3 H 0.075 0.925 4 C 0.296 3.704 5 O -0.391 6.391 6 N -0.334 5.334 7 C -0.067 4.067 8 C 0.097 3.903 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.701 3.299 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.189 1.189 17 N -0.214 5.214 18 C -0.092 4.092 19 C -0.152 4.152 20 C -0.136 4.136 21 H 0.097 0.903 22 C 0.035 3.965 23 N -0.374 5.374 24 C -0.061 4.061 25 C -0.034 4.034 26 O -0.242 6.242 27 C 0.394 3.606 28 O -0.405 6.405 29 C -0.083 4.083 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.063 0.937 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.217 5.904 -26.472 27.213 hybrid contribution 0.774 0.840 0.513 1.252 sum 2.990 6.744 -25.959 26.987 Atomic orbital electron populations 1.21851 0.92167 1.03631 1.02435 1.21841 0.97390 0.95600 0.90595 0.92465 1.20063 0.79540 0.86982 0.83803 1.90668 1.46977 1.16302 1.85170 1.47829 1.59365 1.16050 1.10151 1.21793 0.97786 0.83794 1.03352 1.19638 0.94980 0.93002 0.82683 1.21317 0.96571 1.29752 1.08717 0.90775 1.24862 0.97075 0.94750 0.96388 1.69895 1.33073 1.32107 1.18609 0.86869 0.85710 0.77840 0.79451 1.20160 1.20952 1.18872 1.64624 1.05490 1.51032 1.00269 1.23250 0.99294 0.96967 0.89711 1.22573 0.93663 1.01843 0.97167 1.22466 0.96401 0.99197 0.95555 0.90256 1.21516 0.99648 0.98317 0.76984 1.48112 1.22546 1.59048 1.07706 1.22868 0.97166 1.01749 0.84322 1.24286 0.85130 0.98487 0.95506 1.87290 1.44623 1.73096 1.19168 1.18539 0.82167 0.78511 0.81389 1.91067 1.46001 1.50003 1.53399 1.22838 0.88967 1.02286 0.94202 0.92130 0.90740 0.90955 0.93872 0.91737 0.90583 0.95764 0.94309 0.92608 0.89692 0.93875 0.91383 0.90517 0.89068 0.88743 0.88844 0.88846 0.87677 0.87680 0.93700 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.30 37.16 0.31 -1.54 16 2 C 0.06 0.85 1.37 -68.86 -0.09 0.76 16 3 H 0.06 0.75 7.17 -51.93 -0.37 0.38 16 4 C 0.51 10.37 6.35 -10.99 -0.07 10.30 16 5 O -0.52 -12.73 15.48 5.56 0.09 -12.64 16 6 N -0.60 -12.39 2.86 -182.95 -0.52 -12.92 16 7 C 0.08 1.18 9.85 59.85 0.59 1.77 16 8 C 0.22 5.36 4.21 -5.19 -0.02 5.34 16 9 C -0.53 -15.18 9.94 -34.44 -0.34 -15.53 16 10 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 11 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 13 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 17 N -0.49 -6.65 4.76 -223.89 -1.07 -7.72 16 18 C 0.04 0.34 5.32 -1.90 -0.01 0.33 16 19 C -0.11 -0.91 5.48 -24.87 -0.14 -1.05 16 20 C -0.12 -1.15 3.23 -89.26 -0.29 -1.44 16 21 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 22 C 0.16 1.48 5.12 -4.05 -0.02 1.46 16 23 N -0.63 -5.47 2.86 -178.85 -0.51 -5.98 16 24 C 0.06 0.27 7.45 -3.15 -0.02 0.24 16 25 C 0.04 0.16 8.23 37.72 0.31 0.47 16 26 O -0.33 -3.29 11.09 -37.85 -0.42 -3.71 16 27 C 0.64 7.73 8.85 53.71 0.48 8.20 16 28 O -0.52 -8.61 17.54 -19.11 -0.34 -8.94 16 29 C 0.05 0.60 5.46 -2.75 -0.02 0.58 16 30 H 0.06 0.59 7.37 -51.93 -0.38 0.21 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.96 6.17 -51.93 -0.32 0.63 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.82 4.61 -51.93 -0.24 0.58 16 35 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 37 H 0.04 1.03 6.56 -51.93 -0.34 0.69 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.08 0.76 7.84 -51.93 -0.41 0.35 16 40 H 0.04 0.39 8.02 -51.93 -0.42 -0.02 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.56 7.52 -51.93 -0.39 0.17 16 43 H 0.09 1.01 7.93 -51.93 -0.41 0.60 16 44 H 0.09 0.80 7.99 -51.93 -0.42 0.38 16 45 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.26 7.10 -51.93 -0.37 -0.11 16 47 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 48 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.04 0.61 7.63 -51.93 -0.40 0.21 16 50 H 0.09 1.42 7.31 -51.93 -0.38 1.04 16 LS Contribution 393.56 15.07 5.93 5.93 Total: -1.00 -38.64 393.56 -8.37 -47.01 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -8.20 Total: -2.92 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 0.56 Total: 11.92 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -1.33 Total: -53.73 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.67 Total: -25.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.64 -8.37 -47.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495872598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.342 kcal (2) G-P(sol) polarization free energy of solvation -38.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds