Wall clock time and date at job start Sat Apr 11 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46977 * 2 1 4 4 C 1.50702 * 109.46945 * 119.99816 * 2 1 3 5 5 O 1.21281 * 119.99799 * 100.15175 * 4 2 1 6 6 N 1.34774 * 120.00012 * 280.14848 * 4 2 1 7 7 C 1.46497 * 120.00137 * 5.13285 * 6 4 2 8 8 C 1.46501 * 119.99874 * 185.12961 * 6 4 2 9 9 C 1.50702 * 109.47017 * 270.00395 * 8 6 4 10 10 H 1.07998 * 120.00206 * 359.97438 * 9 8 6 11 11 C 1.37878 * 119.99896 * 180.02562 * 9 8 6 12 12 N 1.31517 * 120.00345 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 120.00078 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46965 * 90.00363 * 13 11 9 15 15 H 1.48496 * 109.47142 * 210.00277 * 13 11 9 16 16 H 1.48498 * 109.46969 * 330.00457 * 13 11 9 17 17 N 1.46893 * 109.47037 * 239.99881 * 2 1 3 18 18 C 1.48534 * 111.00273 * 56.48644 * 17 2 1 19 19 C 1.54931 * 103.23094 * 159.72007 * 18 17 2 20 20 C 1.54603 * 102.92033 * 322.58588 * 19 18 17 21 21 H 1.09002 * 110.38701 * 263.00126 * 20 19 18 22 22 C 1.52996 * 110.30746 * 140.87759 * 20 19 18 23 23 N 1.46497 * 109.47452 * 69.28445 * 22 20 19 24 24 C 1.47091 * 125.55929 * 269.71788 * 23 22 20 25 25 C 1.54083 * 103.77941 * 179.87279 * 24 23 22 26 26 O 1.45703 * 104.00810 * 0.37201 * 25 24 23 27 27 C 1.33779 * 109.47707 * 359.75590 * 26 25 24 28 28 O 1.21507 * 123.07158 * 179.97438 * 27 26 25 29 29 C 1.47910 * 110.99974 * 173.87986 * 17 2 1 30 30 H 1.09003 * 109.47074 * 51.05584 * 1 2 3 31 31 H 1.09003 * 109.46592 * 171.05486 * 1 2 3 32 32 H 1.09001 * 109.46928 * 291.05151 * 1 2 3 33 33 H 1.09001 * 109.46910 * 266.20048 * 7 6 4 34 34 H 1.08997 * 109.47470 * 26.20443 * 7 6 4 35 35 H 1.09000 * 109.47148 * 146.20596 * 7 6 4 36 36 H 1.08999 * 109.47389 * 150.00424 * 8 6 4 37 37 H 1.09007 * 109.47409 * 29.99881 * 8 6 4 38 38 H 0.96998 * 120.00479 * 179.97438 * 12 11 9 39 39 H 1.08997 * 110.66473 * 278.15383 * 18 17 2 40 40 H 1.09002 * 110.66715 * 41.27944 * 18 17 2 41 41 H 1.09005 * 110.72755 * 204.23120 * 19 18 17 42 42 H 1.08997 * 110.72808 * 80.94382 * 19 18 17 43 43 H 1.09002 * 109.46833 * 189.28311 * 22 20 19 44 44 H 1.08997 * 109.47315 * 309.27974 * 22 20 19 45 45 H 1.09006 * 110.56449 * 298.57262 * 24 23 22 46 46 H 1.08996 * 110.56416 * 61.42365 * 24 23 22 47 47 H 1.08995 * 110.73263 * 241.64283 * 25 24 23 48 48 H 1.09001 * 110.43516 * 118.95798 * 25 24 23 49 49 H 1.09004 * 109.91379 * 333.50951 * 29 17 2 50 50 H 1.08994 * 109.91421 * 94.60643 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4090 -1.8608 1.1553 6 7 2.0631 -0.0673 2.4145 7 6 1.5047 1.2822 2.5299 8 6 2.6548 -0.7178 3.5863 9 6 1.5915 -1.4932 4.3208 10 1 0.5765 -1.5003 3.9519 11 6 1.9144 -2.1926 5.4643 12 7 0.9865 -2.8689 6.1056 13 14 3.6699 -2.1797 6.1027 14 1 3.8455 -1.0457 7.0453 15 1 3.9498 -3.4567 6.8070 16 1 4.6098 -2.0265 4.9633 17 7 2.0197 -0.6925 -1.1994 18 6 1.4753 -0.0698 -2.4331 19 6 2.4604 -0.5406 -3.5323 20 6 3.8269 -0.5053 -2.8100 21 1 4.3493 0.4254 -3.0312 22 6 4.6799 -1.7045 -3.2286 23 7 5.0883 -1.5491 -4.6268 24 6 4.3434 -2.0420 -5.7954 25 6 5.2105 -1.6085 -6.9930 26 8 6.3459 -0.9319 -6.3798 27 6 6.2044 -0.9397 -5.0495 28 8 7.0142 -0.4403 -4.2937 29 6 3.4908 -0.5860 -1.3094 30 1 -0.3633 0.6460 -0.7993 31 1 -0.3632 -1.0152 -0.1598 32 1 -0.3633 0.3692 0.9591 33 1 2.2968 2.0167 2.3843 34 1 0.7347 1.4229 1.7714 35 1 1.0673 1.4110 3.5199 36 1 3.0752 0.0390 4.2485 37 1 3.4435 -1.3980 3.2647 38 1 1.2137 -3.3612 6.9098 39 1 0.4687 -0.4353 -2.6365 40 1 1.4817 1.0170 -2.3506 41 1 2.4530 0.1477 -4.3775 42 1 2.2215 -1.5535 -3.8563 43 1 5.5654 -1.7592 -2.5953 44 1 4.0982 -2.6199 -3.1195 45 1 4.2507 -3.1276 -5.7604 46 1 3.3602 -1.5744 -5.8479 47 1 4.6613 -0.9238 -7.6393 48 1 5.5440 -2.4798 -7.5567 49 1 3.8369 0.3147 -0.8024 50 1 3.9607 -1.4646 -0.8674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495872598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:36 Heat of formation + Delta-G solvation = -108.346258 kcal Electronic energy + Delta-G solvation = -30649.129006 eV Core-core repulsion = 26483.354069 eV Total energy + Delta-G solvation = -4165.774937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56413 -41.27144 -39.61692 -38.33573 -36.89235 -36.55245 -34.93402 -34.30610 -31.65597 -30.59689 -30.18838 -29.75146 -27.49263 -26.62005 -25.59009 -24.52458 -23.75039 -22.42044 -21.87731 -21.05618 -19.87881 -19.14139 -18.48808 -18.26859 -18.05285 -17.73070 -17.48909 -16.66570 -16.46620 -16.24499 -15.96355 -15.59355 -15.20276 -15.05941 -14.93615 -14.88650 -14.44285 -14.37944 -14.11562 -14.03238 -13.70436 -13.58633 -13.49771 -13.21768 -13.17456 -13.05309 -13.00010 -12.75363 -12.47723 -12.34209 -12.23350 -12.16162 -12.02527 -11.93206 -11.84499 -11.76371 -11.63641 -11.52305 -10.82892 -10.49454 -9.92228 -9.40221 -9.33016 -8.34589 -6.38954 1.29919 1.34574 1.41661 1.45244 1.59499 1.81214 2.21872 2.30068 2.61581 2.98493 2.99937 3.38004 3.50201 3.61465 3.64364 3.73721 3.92020 4.02313 4.06907 4.12446 4.32599 4.33439 4.37291 4.46081 4.52668 4.56297 4.60946 4.65914 4.67412 4.72988 4.75241 4.80788 4.82458 4.90052 4.92974 4.93684 4.96573 5.05203 5.09161 5.22276 5.27799 5.39063 5.45162 5.60657 5.87324 6.00266 6.24665 6.33737 6.61831 6.72593 6.90477 7.21886 7.46913 8.82465 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.002516 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.104714 B =11127.987585 C =12030.963963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.070 3.930 3 H 0.083 0.917 4 C 0.500 3.500 5 O -0.573 6.573 6 N -0.611 5.611 7 C 0.071 3.929 8 C 0.225 3.775 9 C -0.531 4.531 10 H 0.029 0.971 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.947 3.053 14 H -0.251 1.251 15 H -0.281 1.281 16 H -0.259 1.259 17 N -0.511 5.511 18 C 0.034 3.966 19 C -0.103 4.103 20 C -0.104 4.104 21 H 0.070 0.930 22 C 0.159 3.841 23 N -0.619 5.619 24 C 0.058 3.942 25 C 0.036 3.964 26 O -0.350 6.350 27 C 0.635 3.365 28 O -0.582 6.582 29 C 0.047 3.953 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.268 0.732 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.133 0.867 48 H 0.129 0.871 49 H 0.035 0.965 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 8.460 -29.720 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.042 4.042 3 H 0.100 0.900 4 C 0.287 3.713 5 O -0.452 6.452 6 N -0.344 5.344 7 C -0.071 4.071 8 C 0.103 3.897 9 C -0.570 4.570 10 H 0.047 0.953 11 C -0.187 4.187 12 N -0.585 5.585 13 Si 0.770 3.230 14 H -0.175 1.175 15 H -0.207 1.207 16 H -0.183 1.183 17 N -0.236 5.236 18 C -0.092 4.092 19 C -0.141 4.141 20 C -0.124 4.124 21 H 0.088 0.912 22 C 0.038 3.962 23 N -0.366 5.366 24 C -0.063 4.063 25 C -0.037 4.037 26 O -0.260 6.260 27 C 0.390 3.610 28 O -0.471 6.471 29 C -0.081 4.081 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.126 0.874 45 H 0.132 0.868 46 H 0.137 0.863 47 H 0.151 0.849 48 H 0.147 0.853 49 H 0.053 0.947 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.542 7.562 -29.304 30.303 hybrid contribution 0.836 0.275 1.287 1.559 sum 2.378 7.837 -28.017 29.190 Atomic orbital electron populations 1.21850 0.90506 1.03377 1.03768 1.21765 0.98355 0.95798 0.88322 0.89950 1.21215 0.78207 0.86631 0.85209 1.90627 1.49355 1.19003 1.86195 1.47971 1.59321 1.17847 1.09236 1.22085 0.99526 0.81547 1.03960 1.19292 0.93240 0.93027 0.84154 1.21522 0.95697 1.30592 1.09179 0.95311 1.25840 1.02076 0.94155 0.96655 1.70046 1.35697 1.33332 1.19435 0.85725 0.79450 0.78708 0.79146 1.17497 1.20681 1.18301 1.64557 1.05550 1.52222 1.01298 1.23403 1.00102 0.97727 0.87980 1.22585 0.91082 1.03310 0.97103 1.22308 0.97770 0.98708 0.93638 0.91171 1.21386 0.98624 0.98839 0.77382 1.48108 1.22047 1.57964 1.08434 1.23263 0.97615 1.03229 0.82194 1.24794 0.83670 0.99809 0.95462 1.87250 1.47110 1.73666 1.18001 1.18736 0.82255 0.78206 0.81813 1.91004 1.48183 1.52691 1.55215 1.22715 0.89015 1.00196 0.96197 0.87839 0.92797 0.91503 0.90708 0.88815 0.91518 0.93542 0.96638 0.92285 0.88336 0.92440 0.88763 0.89269 0.91843 0.87420 0.86805 0.86330 0.84867 0.85293 0.94685 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.30 71.98 0.60 -2.64 16 2 C 0.07 1.95 1.37 44.17 0.06 2.01 16 3 H 0.08 1.91 7.17 -2.39 -0.02 1.89 16 4 C 0.50 20.65 6.35 87.66 0.56 21.21 16 5 O -0.57 -29.68 15.48 -3.03 -0.05 -29.73 16 6 N -0.61 -25.40 2.86 -851.13 -2.43 -27.84 16 7 C 0.07 2.06 9.85 127.77 1.26 3.32 16 8 C 0.23 11.31 4.21 85.63 0.36 11.67 16 9 C -0.53 -31.92 9.94 25.60 0.25 -31.66 16 10 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 11 C 0.01 0.64 5.47 84.65 0.46 1.10 16 12 N -0.94 -60.55 13.96 21.45 0.30 -60.25 16 13 Si 0.95 45.50 27.47 68.60 1.88 47.38 16 14 H -0.25 -11.01 7.11 99.48 0.71 -10.30 16 15 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 16 H -0.26 -12.12 6.54 99.48 0.65 -11.47 16 17 N -0.51 -13.25 4.76 -862.24 -4.11 -17.35 16 18 C 0.03 0.54 5.32 86.65 0.46 1.00 16 19 C -0.10 -1.26 5.48 31.80 0.17 -1.09 16 20 C -0.10 -1.96 3.23 -9.92 -0.03 -1.99 16 21 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 22 C 0.16 2.99 5.12 86.38 0.44 3.44 16 23 N -0.62 -10.00 2.86 -951.48 -2.72 -12.72 16 24 C 0.06 0.29 7.45 86.63 0.65 0.94 16 25 C 0.04 0.16 8.23 72.35 0.60 0.76 16 26 O -0.35 -6.54 11.09 -47.38 -0.53 -7.06 16 27 C 0.64 15.34 8.85 129.91 1.15 16.49 16 28 O -0.58 -20.31 17.54 19.66 0.34 -19.96 16 29 C 0.05 1.26 5.46 86.44 0.47 1.73 16 30 H 0.10 1.56 7.37 -2.39 -0.02 1.55 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.64 6.17 -2.39 -0.01 1.63 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 2.15 4.61 -2.39 -0.01 2.14 16 35 H 0.07 2.07 8.10 -2.39 -0.02 2.05 16 36 H 0.05 2.12 7.50 -2.39 -0.02 2.10 16 37 H 0.02 0.85 6.56 -2.38 -0.02 0.84 16 38 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 39 H 0.10 1.33 7.84 -2.39 -0.02 1.31 16 40 H 0.06 0.78 8.02 -2.39 -0.02 0.76 16 41 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.09 0.91 7.52 -2.39 -0.02 0.89 16 43 H 0.06 1.55 7.93 -2.39 -0.02 1.53 16 44 H 0.11 1.73 7.99 -2.39 -0.02 1.71 16 45 H 0.11 0.17 8.14 -2.38 -0.02 0.15 16 46 H 0.12 0.05 7.10 -2.39 -0.02 0.04 16 47 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 49 H 0.03 0.97 7.63 -2.38 -0.02 0.95 16 50 H 0.06 1.93 7.31 -2.39 -0.02 1.91 16 Total: -1.00 -92.94 393.56 1.03 -91.91 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.87 Total: 9.33 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 7.46 Total: 26.29 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -8.96 Total: -118.16 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -0.23 Total: -56.75 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Total: -92.94 1.03 -91.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495872598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.437 kcal (2) G-P(sol) polarization free energy of solvation -92.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds