Wall clock time and date at job start Sat Apr 11 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 109.47236 * 2 1 4 4 N 1.46498 * 109.46700 * 239.99797 * 2 1 3 5 5 C 1.34789 * 119.99579 * 85.00189 * 4 2 1 6 6 O 1.21276 * 119.99817 * 0.02562 * 5 4 2 7 7 C 1.50694 * 119.99731 * 179.72244 * 5 4 2 8 8 N 1.46501 * 109.47176 * 180.27680 * 7 5 4 9 9 C 1.46093 * 118.72946 * 269.73336 * 8 7 5 10 10 C 1.53211 * 109.82341 * 161.46098 * 9 8 7 11 11 O 1.43255 * 108.51079 * 49.54346 * 10 9 8 12 12 C 1.42962 * 112.98478 * 291.45792 * 11 10 9 13 13 C 1.33878 * 118.72789 * 89.99705 * 8 7 5 14 14 O 1.21279 * 118.83113 * 1.88786 * 13 8 7 15 15 C 1.52999 * 109.46956 * 120.00606 * 2 1 3 16 16 C 1.53037 * 109.46619 * 60.06505 * 15 2 1 17 17 C 1.53190 * 109.31590 * 178.61463 * 16 15 2 18 18 N 1.46930 * 108.77421 * 54.63379 * 17 16 15 19 19 C 1.36934 * 120.62918 * 126.41481 * 18 17 16 20 20 H 1.08005 * 120.00031 * 331.81421 * 19 18 17 21 21 C 1.38809 * 119.99881 * 151.80860 * 19 18 17 22 22 N 1.31620 * 120.00203 * 343.07883 * 21 19 18 23 23 Si 1.86806 * 119.99800 * 163.07435 * 21 19 18 24 24 H 1.48497 * 109.47128 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46943 * 120.00516 * 23 21 19 26 26 H 1.48497 * 109.47102 * 240.00136 * 23 21 19 27 27 C 1.46921 * 118.73870 * 306.38910 * 18 17 16 28 28 C 1.53041 * 109.45955 * 299.99279 * 15 2 1 29 29 H 1.09001 * 109.47082 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46641 * 299.99982 * 1 2 3 31 31 H 1.08992 * 109.46991 * 59.99657 * 1 2 3 32 32 H 0.96994 * 120.00560 * 265.00001 * 4 2 1 33 33 H 1.09007 * 109.47305 * 300.27392 * 7 5 4 34 34 H 1.09003 * 109.47522 * 60.27345 * 7 5 4 35 35 H 1.08994 * 109.39405 * 281.77868 * 9 8 7 36 36 H 1.09003 * 109.38910 * 41.49925 * 9 8 7 37 37 H 1.08991 * 109.83187 * 289.75018 * 10 9 8 38 38 H 1.08997 * 109.66538 * 169.23721 * 10 9 8 39 39 H 1.09003 * 109.41419 * 289.49013 * 12 11 10 40 40 H 1.09002 * 109.35818 * 169.66920 * 12 11 10 41 41 H 1.08999 * 109.45766 * 180.02562 * 15 2 1 42 42 H 1.09003 * 109.49805 * 298.56839 * 16 15 2 43 43 H 1.08998 * 109.49854 * 58.66203 * 16 15 2 44 44 H 1.08997 * 109.58446 * 294.84825 * 17 16 15 45 45 H 1.09001 * 109.70458 * 174.49336 * 17 16 15 46 46 H 0.97003 * 119.99581 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.59293 * 293.82295 * 27 18 17 48 48 H 1.09007 * 109.58686 * 173.39328 * 27 18 17 49 49 H 1.08997 * 109.50232 * 301.34117 * 28 15 2 50 50 H 1.09004 * 109.49679 * 61.40852 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1586 -2.4114 7 6 2.6551 -0.7271 -3.5861 8 7 2.7094 0.2156 -4.7062 9 6 1.5358 0.3539 -5.5652 10 6 1.6181 1.6672 -6.3498 11 8 2.9128 1.7541 -6.9568 12 6 3.9648 1.9310 -6.0050 13 6 3.8345 0.9131 -4.9063 14 8 4.7823 0.7164 -4.1756 15 6 2.0400 -0.7214 1.2492 16 6 1.5312 -2.1647 1.2481 17 6 2.0720 -2.8936 2.4821 18 7 1.7086 -2.1265 3.6815 19 6 1.0455 -2.7261 4.7187 20 1 0.3981 -3.5698 4.5301 21 6 1.2056 -2.2497 6.0126 22 7 2.2198 -1.4628 6.3035 23 14 -0.0185 -2.7254 7.3411 24 1 -1.0586 -3.6126 6.7612 25 1 0.6893 -3.4410 8.4331 26 1 -0.6589 -1.5012 7.8855 27 6 2.0707 -0.7042 3.7469 28 6 1.5299 0.0002 2.4986 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2490 -1.6318 -1.1527 33 1 3.6536 -1.1193 -3.3926 34 1 1.9839 -1.5490 -3.8351 35 1 1.4950 -0.4850 -6.2600 36 1 0.6358 0.3572 -4.9504 37 1 1.4732 2.5108 -5.6750 38 1 0.8500 1.6813 -7.1231 39 1 3.9040 2.9328 -5.5798 40 1 4.9267 1.8063 -6.5023 41 1 3.1300 -0.7209 1.2492 42 1 0.4414 -2.1663 1.2731 43 1 1.8755 -2.6712 0.3464 44 1 3.1570 -2.9724 2.4136 45 1 1.6361 -3.8910 2.5402 46 1 2.3313 -1.1297 7.2077 47 1 3.1556 -0.6044 3.7815 48 1 1.6318 -0.2560 4.6384 49 1 1.8733 1.0346 2.4871 50 1 0.4401 -0.0212 2.5117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734583621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:15 Heat of formation + Delta-G solvation = -87.899877 kcal Electronic energy + Delta-G solvation = -30529.322736 eV Core-core repulsion = 26364.434421 eV Total energy + Delta-G solvation = -4164.888316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.18549 -39.79310 -38.18306 -37.90970 -35.77798 -35.18137 -32.94713 -31.42387 -30.71781 -29.94482 -29.42831 -28.69931 -26.44287 -25.38892 -24.32976 -23.33965 -22.38905 -21.03038 -20.30150 -19.46534 -18.70298 -18.11003 -17.69255 -17.36987 -16.65746 -16.23008 -15.95062 -15.76041 -15.15268 -15.01423 -14.74497 -14.47511 -14.27319 -13.99616 -13.83984 -13.66483 -13.53738 -13.43253 -13.14175 -12.85542 -12.50985 -12.25877 -12.18041 -12.11170 -11.75682 -11.69467 -11.42425 -11.26476 -10.97083 -10.92659 -10.73520 -10.45859 -10.26740 -10.17403 -10.10778 -9.93477 -9.81954 -9.54475 -9.43781 -9.09157 -9.00202 -8.47782 -6.67353 -5.79551 -3.22218 2.07980 2.35151 2.53424 3.18335 3.31326 3.35887 3.43897 3.45783 3.89195 4.27145 4.48417 4.51835 4.62156 4.64754 4.76467 4.89940 4.96219 5.03436 5.06051 5.12883 5.14802 5.25419 5.31922 5.38578 5.50711 5.63550 5.70987 5.73411 5.81805 6.02135 6.08325 6.13299 6.23761 6.28767 6.35961 6.40738 6.53863 6.61737 6.71947 6.76447 6.80730 6.90615 6.97557 7.37103 7.45991 7.66079 7.67435 7.78865 8.15247 8.44605 9.20832 9.84438 10.41321 11.28840 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033114 B = 0.002065 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.363797 B =13552.794216 C =13701.753823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.082 0.918 4 N -0.719 5.719 5 C 0.498 3.502 6 O -0.539 6.539 7 C 0.088 3.912 8 N -0.587 5.587 9 C 0.083 3.917 10 C 0.044 3.956 11 O -0.372 6.372 12 C 0.053 3.947 13 C 0.493 3.507 14 O -0.537 6.537 15 C -0.085 4.085 16 C -0.128 4.128 17 C 0.145 3.855 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.171 3.829 28 C -0.133 4.133 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.400 0.600 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.131 0.869 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.016 0.984 45 H 0.052 0.948 46 H 0.253 0.747 47 H 0.017 0.983 48 H 0.087 0.913 49 H 0.049 0.951 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 3.543 -26.357 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 H 0.100 0.900 4 N -0.371 5.371 5 C 0.282 3.718 6 O -0.416 6.416 7 C -0.039 4.039 8 N -0.320 5.320 9 C -0.040 4.040 10 C -0.033 4.033 11 O -0.290 6.290 12 C -0.027 4.027 13 C 0.281 3.719 14 O -0.414 6.414 15 C -0.104 4.104 16 C -0.167 4.167 17 C 0.018 3.982 18 N -0.314 5.314 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.045 3.955 28 C -0.173 4.173 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.235 0.765 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.135 0.865 39 H 0.111 0.889 40 H 0.149 0.851 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.106 0.894 49 H 0.068 0.932 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.751 4.353 -26.065 26.484 hybrid contribution -0.607 -0.677 1.156 1.470 sum -2.358 3.676 -24.910 25.290 Atomic orbital electron populations 1.22209 0.95359 1.02272 1.01985 1.21121 0.94137 0.96964 0.83544 0.90027 1.46212 1.66905 1.14275 1.09723 1.21013 0.77890 0.87833 0.85050 1.90675 1.50071 1.15809 1.84996 1.21398 1.05055 0.92094 0.85338 1.47016 1.14221 1.41955 1.28822 1.22223 0.88661 0.99491 0.93597 1.23052 0.85966 0.96162 0.98153 1.88181 1.15016 1.93869 1.31910 1.22827 0.93371 0.97533 0.88950 1.21003 0.82248 0.82216 0.86416 1.90765 1.37480 1.65554 1.47554 1.21323 1.00111 0.95738 0.93272 1.22110 1.01156 0.95006 0.98434 1.20881 0.96194 0.94282 0.86795 1.44047 1.66795 1.05081 1.15521 1.19210 1.18976 1.14317 0.85575 0.91725 1.25055 0.97112 1.00485 0.97089 1.70044 1.27883 1.37573 1.19181 0.86246 0.80960 0.77781 0.81915 1.20290 1.21758 1.21565 1.20769 0.96423 0.83704 0.94559 1.22256 1.00934 0.97992 0.96130 0.92105 0.91056 0.93203 0.76465 0.86436 0.87309 0.90353 0.89415 0.91289 0.86550 0.88899 0.85081 0.91401 0.91719 0.93797 0.96655 0.92900 0.93687 0.96509 0.89438 0.93229 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.78 37.16 0.33 -1.80 16 2 C 0.15 2.04 2.40 -67.93 -0.16 1.88 16 3 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 4 N -0.72 -8.45 5.00 -53.81 -0.27 -8.72 16 5 C 0.50 6.22 7.86 -10.98 -0.09 6.13 16 6 O -0.54 -8.69 16.09 5.56 0.09 -8.60 16 7 C 0.09 0.81 5.80 -5.20 -0.03 0.78 16 8 N -0.59 -5.67 2.32 -175.67 -0.41 -6.08 16 9 C 0.08 0.53 6.63 -4.15 -0.03 0.50 16 10 C 0.04 0.26 6.91 37.27 0.26 0.52 16 11 O -0.37 -2.92 10.85 -35.23 -0.38 -3.31 16 12 C 0.05 0.43 6.98 35.83 0.25 0.68 16 13 C 0.49 5.68 7.58 -11.56 -0.09 5.59 16 14 O -0.54 -8.18 16.36 5.56 0.09 -8.09 16 15 C -0.09 -1.34 2.14 -90.58 -0.19 -1.54 16 16 C -0.13 -1.99 4.81 -26.61 -0.13 -2.12 16 17 C 0.15 2.90 6.52 -3.71 -0.02 2.87 16 18 N -0.59 -14.46 2.99 -172.32 -0.52 -14.97 16 19 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 20 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 21 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 22 N -0.90 -26.11 11.20 55.49 0.62 -25.49 16 23 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 28 C -0.13 -2.46 4.97 -26.61 -0.13 -2.59 16 29 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 30 H 0.07 0.98 6.46 -51.93 -0.34 0.65 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 3.84 6.84 -40.82 -0.28 3.56 16 33 H 0.12 1.13 7.23 -51.92 -0.38 0.76 16 34 H 0.11 0.61 8.04 -51.93 -0.42 0.19 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.53 8.13 -51.93 -0.42 0.10 16 37 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 38 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.05 6.51 -51.93 -0.34 0.71 16 43 H 0.04 0.54 6.46 -51.93 -0.34 0.21 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 2.31 6.06 -51.92 -0.31 2.00 16 49 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.06 1.13 6.51 -51.93 -0.34 0.79 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -35.00 388.67 -8.30 -43.31 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.07 Total: 1.67 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -0.29 Total: 7.93 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.57 Total: -55.26 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.20 Total: -20.00 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.00 -8.30 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734583621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.593 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds