Wall clock time and date at job start Sat Apr 11 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46869 * 2 1 4 4 N 1.46503 * 109.47119 * 119.99351 * 2 1 3 5 5 C 1.34772 * 120.00214 * 275.00070 * 4 2 1 6 6 O 1.21281 * 120.00174 * 0.02562 * 5 4 2 7 7 C 1.50708 * 120.00056 * 180.02562 * 5 4 2 8 8 N 1.46504 * 109.46959 * 180.02562 * 7 5 4 9 9 C 1.46088 * 118.72851 * 269.73230 * 8 7 5 10 10 C 1.53208 * 109.82591 * 161.46739 * 9 8 7 11 11 O 1.43247 * 108.50941 * 49.53919 * 10 9 8 12 12 C 1.42966 * 112.98934 * 291.45901 * 11 10 9 13 13 C 1.33866 * 118.73110 * 90.00149 * 8 7 5 14 14 O 1.21291 * 118.83070 * 1.88184 * 13 8 7 15 15 C 1.52997 * 109.47441 * 239.99838 * 2 1 3 16 16 C 1.53041 * 109.46332 * 180.02562 * 15 2 1 17 17 C 1.53190 * 109.31361 * 178.60104 * 16 15 2 18 18 N 1.46924 * 108.76422 * 54.65229 * 17 16 15 19 19 C 1.36938 * 120.62707 * 126.40600 * 18 17 16 20 20 H 1.07997 * 120.00548 * 331.82331 * 19 18 17 21 21 C 1.38818 * 119.99900 * 151.82191 * 19 18 17 22 22 N 1.31619 * 119.99776 * 343.07628 * 21 19 18 23 23 Si 1.86794 * 120.00037 * 163.07248 * 21 19 18 24 24 H 1.48504 * 109.47271 * 90.00439 * 23 21 19 25 25 H 1.48498 * 109.47246 * 210.00631 * 23 21 19 26 26 H 1.48500 * 109.47104 * 330.00259 * 23 21 19 27 27 C 1.46921 * 118.74105 * 306.38135 * 18 17 16 28 28 C 1.53043 * 109.45889 * 59.96913 * 15 2 1 29 29 H 1.09004 * 109.46963 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47535 * 60.00571 * 1 2 3 31 31 H 1.09002 * 109.47304 * 299.99807 * 1 2 3 32 32 H 0.97002 * 119.99587 * 95.00574 * 4 2 1 33 33 H 1.09001 * 109.46787 * 300.00324 * 7 5 4 34 34 H 1.08996 * 109.46578 * 60.00112 * 7 5 4 35 35 H 1.09001 * 109.39979 * 281.78352 * 9 8 7 36 36 H 1.09007 * 109.39653 * 41.50594 * 9 8 7 37 37 H 1.09004 * 109.82980 * 289.74880 * 10 9 8 38 38 H 1.08997 * 109.67540 * 169.23836 * 10 9 8 39 39 H 1.08996 * 109.41550 * 289.49620 * 12 11 10 40 40 H 1.09003 * 109.36046 * 169.66566 * 12 11 10 41 41 H 1.08998 * 109.45946 * 299.99944 * 15 2 1 42 42 H 1.09006 * 109.49033 * 298.56713 * 16 15 2 43 43 H 1.09004 * 109.49907 * 58.65693 * 16 15 2 44 44 H 1.09003 * 109.59716 * 294.86739 * 17 16 15 45 45 H 1.08999 * 109.70155 * 174.50222 * 17 16 15 46 46 H 0.97000 * 119.99690 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.59222 * 293.82594 * 27 18 17 48 48 H 1.09006 * 109.70406 * 173.46617 * 27 18 17 49 49 H 1.08996 * 109.49606 * 301.33993 * 28 15 2 50 50 H 1.08999 * 109.49655 * 61.40257 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1586 2.4117 7 6 2.6500 -0.7283 3.5876 8 7 2.6985 0.2131 4.7092 9 6 3.9268 0.9702 4.9377 10 6 3.6308 2.1861 5.8216 11 8 2.8858 1.7475 6.9638 12 6 1.5641 1.3128 6.6350 13 6 1.6176 0.3421 5.4882 14 8 0.6470 -0.3489 5.2610 15 6 2.0401 -0.7213 -1.2492 16 6 3.5705 -0.7217 -1.2486 17 6 4.0774 -1.4748 -2.4825 18 7 3.4748 -0.8771 -3.6817 19 6 4.2607 -0.4516 -4.7193 20 1 5.2718 -0.1221 -4.5310 21 6 3.7578 -0.4439 -6.0131 22 7 2.6779 -1.1381 -6.3035 23 14 4.6135 0.5517 -7.3419 24 1 5.6370 -0.2914 -8.0104 25 1 3.6140 1.0038 -8.3427 26 1 5.2699 1.7344 -6.7289 27 6 2.0130 -0.7449 -3.7468 28 6 1.5292 -0.0001 -2.4986 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 2.2491 -1.6317 1.1527 33 1 1.9778 -1.5506 3.8326 34 1 3.6493 -1.1200 3.3979 35 1 4.6600 0.3309 5.4294 36 1 4.3267 1.3085 3.9818 37 1 3.0462 2.9165 5.2621 38 1 4.5669 2.6394 6.1476 39 1 0.9591 2.1743 6.3526 40 1 1.1180 0.8253 7.5019 41 1 1.6767 -1.7489 -1.2490 42 1 3.9344 0.3055 -1.2740 43 1 3.9338 -1.2146 -0.3469 44 1 3.7905 -2.5242 -2.4137 45 1 5.1629 -1.3959 -2.5409 46 1 2.3263 -1.1324 -7.2075 47 1 1.5577 -1.7347 -3.7811 48 1 1.7341 -0.1833 -4.6385 49 1 0.4395 0.0205 -2.4867 50 1 1.9122 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734610484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:18 Heat of formation + Delta-G solvation = -115.093057 kcal Electronic energy + Delta-G solvation = -30566.077860 eV Core-core repulsion = 26400.010359 eV Total energy + Delta-G solvation = -4166.067501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.95295 -40.78164 -39.37559 -38.72747 -36.93114 -36.24859 -34.51792 -33.01350 -31.52829 -31.32196 -30.79387 -29.78358 -27.26177 -26.99793 -24.99298 -24.53005 -23.66125 -22.25974 -21.56021 -20.74836 -20.12053 -18.83708 -18.76346 -18.35775 -18.13094 -17.09441 -16.95273 -16.68255 -16.51210 -15.95652 -15.79230 -15.59478 -15.32507 -15.31723 -14.88305 -14.78959 -14.68740 -14.45284 -14.31382 -14.05397 -14.02198 -13.56774 -13.40733 -13.07512 -12.87671 -12.79729 -12.75671 -12.61095 -12.42885 -12.30583 -12.17740 -12.02336 -11.79363 -11.63787 -11.50274 -11.30810 -11.08513 -11.05974 -10.55657 -10.52664 -10.07469 -9.86384 -8.65835 -7.87327 -5.31889 1.26751 1.44959 1.47098 1.56247 1.60037 1.66737 2.30278 2.50999 2.75110 3.27050 3.27260 3.65051 3.71219 3.75088 3.84306 3.95179 4.04193 4.07183 4.14068 4.19482 4.35329 4.38444 4.40823 4.46641 4.48928 4.55986 4.58665 4.71183 4.74146 4.78677 4.80432 4.88805 4.98125 5.03050 5.08773 5.12034 5.18179 5.29188 5.36382 5.43295 5.52023 5.56570 5.66155 5.73658 5.80020 6.20140 6.40179 6.54520 6.87483 7.16162 7.23870 7.88836 8.39270 9.18687 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.002192 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.158522 B =12772.186981 C =13270.457039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.160 3.840 3 H 0.063 0.937 4 N -0.708 5.708 5 C 0.497 3.503 6 O -0.579 6.579 7 C 0.090 3.910 8 N -0.588 5.588 9 C 0.078 3.922 10 C 0.040 3.960 11 O -0.377 6.377 12 C 0.056 3.944 13 C 0.483 3.517 14 O -0.584 6.584 15 C -0.072 4.072 16 C -0.110 4.110 17 C 0.140 3.860 18 N -0.612 5.612 19 C -0.261 4.261 20 H 0.064 0.936 21 C -0.052 4.052 22 N -0.934 5.934 23 Si 0.963 3.037 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.273 1.273 27 C 0.178 3.822 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.415 0.585 33 H 0.117 0.883 34 H 0.151 0.849 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.147 0.853 39 H 0.098 0.902 40 H 0.145 0.855 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.019 0.981 45 H 0.050 0.950 46 H 0.249 0.751 47 H -0.001 1.001 48 H 0.049 0.951 49 H 0.072 0.928 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 2.237 26.574 26.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.081 0.919 4 N -0.360 5.360 5 C 0.283 3.717 6 O -0.459 6.459 7 C -0.037 4.037 8 N -0.319 5.319 9 C -0.044 4.044 10 C -0.036 4.036 11 O -0.295 6.295 12 C -0.023 4.023 13 C 0.272 3.728 14 O -0.465 6.465 15 C -0.091 4.091 16 C -0.149 4.149 17 C 0.015 3.985 18 N -0.336 5.336 19 C -0.392 4.392 20 H 0.081 0.919 21 C -0.247 4.247 22 N -0.580 5.580 23 Si 0.792 3.208 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.198 1.198 27 C 0.052 3.948 28 C -0.161 4.161 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.252 0.748 33 H 0.135 0.865 34 H 0.169 0.831 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.164 0.836 39 H 0.116 0.884 40 H 0.163 0.837 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.017 0.983 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.400 2.721 26.562 26.738 hybrid contribution 0.052 0.025 -1.812 1.813 sum 1.452 2.746 24.750 24.944 Atomic orbital electron populations 1.22137 0.95179 1.02589 1.01606 1.20786 0.93857 0.96255 0.83631 0.91867 1.45957 1.66491 1.14719 1.08848 1.21592 0.77167 0.87372 0.85587 1.90670 1.51714 1.18039 1.85477 1.21536 1.06307 0.92558 0.83261 1.47227 1.14746 1.42218 1.27754 1.22480 0.85514 0.94405 1.01998 1.23244 0.98968 0.94616 0.86787 1.88179 1.25002 1.83898 1.32390 1.22836 0.86518 0.96408 0.96564 1.21584 0.82118 0.84189 0.84876 1.90720 1.35715 1.46705 1.73357 1.21181 0.95909 0.99568 0.92471 1.21877 0.94768 1.00210 0.98084 1.21073 0.96445 0.94338 0.86630 1.44332 1.02404 1.70561 1.16303 1.19480 0.97499 1.35613 0.86576 0.91864 1.25770 0.99389 1.00413 0.99128 1.70173 1.26070 1.42466 1.19316 0.85339 0.77533 0.78945 0.79018 1.21032 1.21932 1.19757 1.20564 0.83005 0.95787 0.95440 1.22061 0.99960 0.98851 0.95245 0.91372 0.91071 0.94112 0.74802 0.86532 0.83131 0.87825 0.88964 0.92389 0.83580 0.88411 0.83706 0.90366 0.93798 0.89551 0.96319 0.93117 0.94162 0.98281 0.93222 0.90976 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 9.13 71.98 0.66 -3.35 16 2 C 0.16 4.13 2.16 44.99 0.10 4.23 16 3 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 4 N -0.71 -14.47 4.36 -442.53 -1.93 -16.40 16 5 C 0.50 11.40 7.86 87.66 0.69 12.09 16 6 O -0.58 -18.34 16.09 -3.03 -0.05 -18.39 16 7 C 0.09 1.41 5.80 85.63 0.50 1.91 16 8 N -0.59 -10.28 2.32 -828.57 -1.92 -12.21 16 9 C 0.08 0.84 6.63 86.53 0.57 1.41 16 10 C 0.04 0.41 6.91 72.05 0.50 0.91 16 11 O -0.38 -5.28 10.85 -148.98 -1.62 -6.90 16 12 C 0.06 0.86 6.98 71.12 0.50 1.35 16 13 C 0.48 10.55 7.58 87.69 0.66 11.21 16 14 O -0.58 -17.24 16.36 -3.06 -0.05 -17.29 16 15 C -0.07 -2.08 1.79 -10.77 -0.02 -2.10 16 16 C -0.11 -3.30 5.22 30.67 0.16 -3.14 16 17 C 0.14 5.46 6.52 86.36 0.56 6.02 16 18 N -0.61 -30.18 2.99 -699.10 -2.09 -32.27 16 19 C -0.26 -14.33 9.58 84.03 0.81 -13.53 16 20 H 0.06 3.39 7.88 -2.91 -0.02 3.37 16 21 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 22 N -0.93 -55.18 11.19 21.65 0.24 -54.93 16 23 Si 0.96 44.93 29.59 68.60 2.03 46.95 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 27 C 0.18 8.40 5.30 86.36 0.46 8.85 16 28 C -0.12 -4.38 5.04 30.67 0.15 -4.22 16 29 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.07 1.81 6.40 -2.39 -0.02 1.79 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.42 5.98 8.39 -92.71 -0.78 5.21 16 33 H 0.12 1.92 7.23 -2.39 -0.02 1.90 16 34 H 0.15 1.10 8.04 -2.39 -0.02 1.08 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 0.97 8.13 -2.38 -0.02 0.95 16 37 H 0.06 0.73 8.10 -2.38 -0.02 0.71 16 38 H 0.15 0.60 8.14 -2.39 -0.02 0.59 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.09 1.93 7.41 -2.38 -0.02 1.91 16 44 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 46 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 47 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 48 H 0.05 2.70 6.07 -2.38 -0.01 2.69 16 49 H 0.07 2.32 6.36 -2.39 -0.02 2.30 16 50 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -78.38 393.87 1.48 -76.89 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.16 Total: 15.35 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 6.71 Total: 19.18 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -5.70 Total: -115.81 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -1.72 Total: -42.58 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -78.38 1.48 -76.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734610484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.201 kcal (2) G-P(sol) polarization free energy of solvation -78.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds