Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47863 * 2 1 4 4 C 1.53086 * 109.48548 * 239.97285 * 2 1 3 5 5 C 1.53180 * 109.16525 * 182.39744 * 4 2 1 6 6 H 1.09005 * 109.54192 * 176.93619 * 5 4 2 7 7 C 1.50698 * 109.54085 * 297.11192 * 5 4 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 5 4 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 5 11 11 H 1.09002 * 112.85201 * 24.08188 * 10 9 7 12 12 C 1.53784 * 113.61491 * 155.28109 * 10 9 7 13 13 C 1.53777 * 87.08172 * 89.11442 * 12 10 9 14 14 H 1.08996 * 113.61378 * 270.80012 * 13 12 10 15 15 N 1.46902 * 113.61167 * 139.98460 * 13 12 10 16 16 C 1.46901 * 111.00233 * 155.00276 * 15 13 12 17 17 C 1.50697 * 109.47289 * 180.02562 * 16 15 13 18 18 O 1.21290 * 119.99871 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99819 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99718 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00560 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99837 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00002 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99963 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47379 * 59.99736 * 24 22 20 26 26 H 1.48496 * 109.47193 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46723 * 299.99588 * 24 22 20 28 28 C 1.53777 * 87.08146 * 25.43581 * 13 12 10 29 29 C 1.53173 * 109.03559 * 56.98412 * 5 4 2 30 30 C 1.53095 * 109.16166 * 303.01796 * 29 5 4 31 31 O 1.42902 * 109.41666 * 57.60859 * 30 29 5 32 32 H 1.09006 * 109.46782 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47555 * 300.02609 * 1 2 3 34 34 H 1.09000 * 109.47147 * 60.03014 * 1 2 3 35 35 H 1.09003 * 109.52563 * 62.48887 * 4 2 1 36 36 H 1.09006 * 109.52385 * 302.30723 * 4 2 1 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 5 38 38 H 1.08999 * 113.61037 * 203.66621 * 12 10 9 39 39 H 1.08999 * 113.61254 * 334.47782 * 12 10 9 40 40 H 1.00900 * 111.00123 * 31.03958 * 15 13 12 41 41 H 1.09000 * 109.46373 * 299.99631 * 16 15 13 42 42 H 1.08992 * 109.47244 * 59.99381 * 16 15 13 43 43 H 0.96996 * 119.99812 * 359.97438 * 19 17 16 44 44 H 0.97001 * 120.00015 * 179.97438 * 23 22 20 45 45 H 1.08999 * 113.61239 * 220.01646 * 28 13 12 46 46 H 1.08999 * 113.61926 * 89.11880 * 28 13 12 47 47 H 1.08995 * 109.52390 * 62.92350 * 29 5 4 48 48 H 1.09002 * 109.52130 * 183.12049 * 29 5 4 49 49 H 1.09000 * 109.47836 * 297.63087 * 30 29 5 50 50 H 1.09000 * 109.48429 * 177.59798 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0407 -0.7222 -1.2495 5 6 3.5712 -0.7705 -1.2122 6 1 3.9394 -1.3310 -2.0715 7 6 4.1209 0.6321 -1.2519 8 8 3.3646 1.5787 -1.3044 9 7 5.4532 0.8345 -1.2280 10 6 5.9878 2.1978 -1.2727 11 1 5.2788 2.9426 -0.9111 12 6 7.3895 2.3304 -0.6543 13 6 7.9497 2.0079 -2.0496 14 1 8.0897 0.9418 -2.2282 15 7 9.1294 2.8062 -2.4089 16 6 9.9544 2.1081 -3.4039 17 6 11.1526 2.9554 -3.7465 18 8 11.3042 4.0348 -3.2145 19 7 12.0558 2.5136 -4.6441 20 6 13.1456 3.2846 -4.9562 21 1 13.2807 4.2458 -4.4825 22 6 14.0765 2.8295 -5.8819 23 7 13.9125 1.6597 -6.4579 24 14 15.5618 3.8797 -6.3066 25 1 16.3639 4.1216 -5.0806 26 1 16.3961 3.1737 -7.3120 27 1 15.1064 5.1784 -6.8646 28 6 6.6337 2.5624 -2.6198 29 6 4.0179 -1.4597 0.0808 30 6 3.4309 -0.7090 1.2790 31 8 2.0068 -0.6740 1.1664 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5142 0.8897 34 1 -0.3633 0.5134 -0.8903 35 1 1.7148 -0.1844 -2.1399 36 1 1.6445 -1.7375 -1.2709 37 1 6.0582 0.0775 -1.1856 38 1 7.6223 3.3389 -0.3126 39 1 7.6107 1.5687 0.0934 40 1 9.6708 3.0402 -1.5902 41 1 10.2889 1.1551 -2.9941 42 1 9.3655 1.9301 -4.3036 43 1 11.9347 1.6502 -5.0692 44 1 14.5622 1.3422 -7.1044 45 1 6.2453 1.9871 -3.4602 46 1 6.6599 3.6344 -2.8156 47 1 3.6618 -2.4898 0.0863 48 1 5.1062 -1.4490 0.1420 49 1 3.8193 0.3094 1.2957 50 1 3.7103 -1.2198 2.2005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752672176.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -105.401944 kcal Electronic energy + Delta-G solvation = -29338.197623 eV Core-core repulsion = 25172.550360 eV Total energy + Delta-G solvation = -4165.647262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17207 -39.64258 -38.34834 -37.86240 -34.72340 -34.21872 -33.80727 -33.13373 -32.16964 -31.20824 -28.30055 -27.02073 -25.85833 -25.35019 -24.31639 -23.35891 -22.70624 -21.90288 -20.09043 -19.61194 -19.13649 -17.90304 -17.21354 -16.66739 -16.59610 -16.41758 -16.09556 -15.52505 -15.28656 -15.19780 -14.73831 -14.62286 -14.41982 -14.26251 -14.10020 -13.78390 -13.39557 -13.11736 -12.90697 -12.78616 -12.52572 -12.43994 -12.38133 -12.29087 -12.05854 -11.94592 -11.59959 -11.48600 -11.40038 -11.17276 -11.04079 -10.84144 -10.65555 -10.56390 -10.45686 -10.22919 -10.13512 -9.59608 -9.52102 -9.27847 -8.47397 -8.11309 -7.98235 -6.43717 -3.84652 2.26813 2.77858 3.18743 3.24521 3.28964 3.44852 3.88411 4.08968 4.10843 4.20068 4.30921 4.33425 4.34984 4.42893 4.51748 4.65111 4.79596 4.83189 4.92043 5.03614 5.06943 5.17009 5.17111 5.24060 5.25040 5.34645 5.35057 5.38686 5.49555 5.52616 5.58305 5.62728 5.66760 5.72374 5.80095 5.84296 5.86282 5.93323 5.99773 6.04911 6.22842 6.39497 6.93651 7.15157 7.23110 7.53072 7.62025 7.89234 8.03995 8.59034 9.15702 9.51959 10.03419 10.73900 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032897 B = 0.001637 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.935731 B =17098.883700 C =17276.572302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.085 0.915 4 C -0.128 4.128 5 C -0.114 4.114 6 H 0.103 0.897 7 C 0.519 3.481 8 O -0.534 6.534 9 N -0.710 5.710 10 C 0.117 3.883 11 H 0.105 0.895 12 C -0.148 4.148 13 C 0.060 3.940 14 H 0.068 0.932 15 N -0.655 5.655 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.135 4.135 29 C -0.147 4.147 30 C 0.060 3.940 31 O -0.382 6.382 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.400 0.600 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.351 0.649 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.078 0.922 49 H 0.049 0.951 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.738 -10.648 12.609 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.102 0.898 4 C -0.166 4.166 5 C -0.135 4.135 6 H 0.121 0.879 7 C 0.305 3.695 8 O -0.410 6.410 9 N -0.361 5.361 10 C 0.011 3.989 11 H 0.123 0.877 12 C -0.186 4.186 13 C -0.051 4.051 14 H 0.086 0.914 15 N -0.288 5.288 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.175 4.175 29 C -0.185 4.185 30 C -0.017 4.017 31 O -0.301 6.301 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.234 0.766 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.171 0.829 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.119 0.881 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.067 0.933 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.498 -9.029 12.450 28.083 hybrid contribution 1.825 -1.188 -0.409 2.216 sum -21.673 -10.217 12.041 26.816 Atomic orbital electron populations 1.21737 0.93228 1.02478 1.02504 1.22388 0.95012 0.96888 0.84050 0.89776 1.22013 0.92614 1.01946 1.00014 1.21455 0.97886 0.93728 1.00436 0.87884 1.20611 0.82157 0.91341 0.75351 1.90667 1.57412 1.43962 1.48970 1.45758 1.06842 1.08589 1.74938 1.21787 0.94951 0.84058 0.98062 0.87732 1.23605 0.94683 1.03646 0.96681 1.23096 0.91457 0.95637 0.94922 0.91385 1.60211 1.09176 1.43126 1.16262 1.21730 0.94543 0.95023 0.96958 1.19818 0.85116 0.88331 0.84217 1.90522 1.77503 1.23113 1.55631 1.41859 1.21070 1.19918 1.37140 1.19664 0.99062 1.02412 1.21892 0.87958 1.25265 0.99513 0.96582 0.96545 1.69603 1.37341 1.18688 1.28708 0.85909 0.80524 0.79480 0.78254 1.19918 1.20971 1.19861 1.23540 0.94661 1.02996 0.96256 1.22205 1.01415 1.00889 0.93988 1.22532 0.81667 0.99520 0.97976 1.87907 1.20365 1.78233 1.43601 0.92172 0.91966 0.91026 0.90036 0.90469 0.76577 0.87757 0.91096 0.82873 0.93965 0.89699 0.77486 0.91816 0.91591 0.88086 0.89646 0.90358 0.93289 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.57 37.16 0.36 -0.71 16 2 C 0.07 0.67 2.97 -26.69 -0.08 0.59 16 3 H 0.08 0.95 5.80 -51.93 -0.30 0.65 16 4 C -0.13 -0.97 4.56 -26.59 -0.12 -1.09 16 5 C -0.11 -0.77 3.04 -91.59 -0.28 -1.05 16 6 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 7 C 0.52 4.81 5.82 -10.99 -0.06 4.74 16 8 O -0.53 -6.82 13.44 5.55 0.07 -6.75 16 9 N -0.71 -5.57 5.14 -53.01 -0.27 -5.84 16 10 C 0.12 1.11 4.32 -67.12 -0.29 0.82 16 11 H 0.10 1.13 7.47 -51.93 -0.39 0.74 16 12 C -0.15 -1.32 7.40 -25.92 -0.19 -1.51 16 13 C 0.06 0.66 4.02 -66.90 -0.27 0.39 16 14 H 0.07 0.68 7.87 -51.93 -0.41 0.28 16 15 N -0.66 -10.05 6.18 -107.14 -0.66 -10.71 16 16 C 0.05 0.86 6.01 -4.98 -0.03 0.83 16 17 C 0.44 10.29 7.82 -10.99 -0.09 10.20 16 18 O -0.58 -15.75 15.78 5.55 0.09 -15.67 16 19 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 24 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C -0.13 -1.50 7.68 -25.92 -0.20 -1.70 16 29 C -0.15 -0.81 5.57 -26.59 -0.15 -0.96 16 30 C 0.06 0.44 6.62 37.21 0.25 0.69 16 31 O -0.38 -3.69 10.41 -35.23 -0.37 -4.06 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.66 8.03 -51.93 -0.42 0.24 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.40 2.24 8.12 -40.82 -0.33 1.91 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.35 5.52 8.24 -39.29 -0.32 5.20 16 41 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.30 7.52 -51.93 -0.39 -0.09 16 49 H 0.05 0.41 7.38 -51.93 -0.38 0.03 16 50 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 400.35 15.07 6.03 6.03 Total: -1.00 -33.18 400.35 -9.13 -42.31 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -8.27 Total: 13.43 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.40 Total: 3.23 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.27 Total: -54.46 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.20 Total: -26.47 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.18 -9.13 -42.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752672176.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.095 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds