Wall clock time and date at job start Sat Apr 11 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47863 * 2 1 4 4 C 1.53086 * 109.48548 * 239.97285 * 2 1 3 5 5 C 1.53180 * 109.16525 * 182.39744 * 4 2 1 6 6 H 1.09005 * 109.54192 * 176.93619 * 5 4 2 7 7 C 1.50698 * 109.54085 * 297.11192 * 5 4 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 5 4 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 5 11 11 H 1.09002 * 112.85201 * 24.08188 * 10 9 7 12 12 C 1.53784 * 113.61491 * 155.28109 * 10 9 7 13 13 C 1.53777 * 87.08172 * 89.11442 * 12 10 9 14 14 H 1.08996 * 113.61378 * 270.80012 * 13 12 10 15 15 N 1.46902 * 113.61167 * 139.98460 * 13 12 10 16 16 C 1.46901 * 111.00233 * 155.00276 * 15 13 12 17 17 C 1.50697 * 109.47289 * 180.02562 * 16 15 13 18 18 O 1.21290 * 119.99871 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99819 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99718 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00560 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99837 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00002 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99963 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47379 * 59.99736 * 24 22 20 26 26 H 1.48496 * 109.47193 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46723 * 299.99588 * 24 22 20 28 28 C 1.53777 * 87.08146 * 25.43581 * 13 12 10 29 29 C 1.53173 * 109.03559 * 56.98412 * 5 4 2 30 30 C 1.53095 * 109.16166 * 303.01796 * 29 5 4 31 31 O 1.42902 * 109.41666 * 57.60859 * 30 29 5 32 32 H 1.09006 * 109.46782 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47555 * 300.02609 * 1 2 3 34 34 H 1.09000 * 109.47147 * 60.03014 * 1 2 3 35 35 H 1.09003 * 109.52563 * 62.48887 * 4 2 1 36 36 H 1.09006 * 109.52385 * 302.30723 * 4 2 1 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 5 38 38 H 1.08999 * 113.61037 * 203.66621 * 12 10 9 39 39 H 1.08999 * 113.61254 * 334.47782 * 12 10 9 40 40 H 1.00900 * 111.00123 * 31.03958 * 15 13 12 41 41 H 1.09000 * 109.46373 * 299.99631 * 16 15 13 42 42 H 1.08992 * 109.47244 * 59.99381 * 16 15 13 43 43 H 0.96996 * 119.99812 * 359.97438 * 19 17 16 44 44 H 0.97001 * 120.00015 * 179.97438 * 23 22 20 45 45 H 1.08999 * 113.61239 * 220.01646 * 28 13 12 46 46 H 1.08999 * 113.61926 * 89.11880 * 28 13 12 47 47 H 1.08995 * 109.52390 * 62.92350 * 29 5 4 48 48 H 1.09002 * 109.52130 * 183.12049 * 29 5 4 49 49 H 1.09000 * 109.47836 * 297.63087 * 30 29 5 50 50 H 1.09000 * 109.48429 * 177.59798 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0407 -0.7222 -1.2495 5 6 3.5712 -0.7705 -1.2122 6 1 3.9394 -1.3310 -2.0715 7 6 4.1209 0.6321 -1.2519 8 8 3.3646 1.5787 -1.3044 9 7 5.4532 0.8345 -1.2280 10 6 5.9878 2.1978 -1.2727 11 1 5.2788 2.9426 -0.9111 12 6 7.3895 2.3304 -0.6543 13 6 7.9497 2.0079 -2.0496 14 1 8.0897 0.9418 -2.2282 15 7 9.1294 2.8062 -2.4089 16 6 9.9544 2.1081 -3.4039 17 6 11.1526 2.9554 -3.7465 18 8 11.3042 4.0348 -3.2145 19 7 12.0558 2.5136 -4.6441 20 6 13.1456 3.2846 -4.9562 21 1 13.2807 4.2458 -4.4825 22 6 14.0765 2.8295 -5.8819 23 7 13.9125 1.6597 -6.4579 24 14 15.5618 3.8797 -6.3066 25 1 16.3639 4.1216 -5.0806 26 1 16.3961 3.1737 -7.3120 27 1 15.1064 5.1784 -6.8646 28 6 6.6337 2.5624 -2.6198 29 6 4.0179 -1.4597 0.0808 30 6 3.4309 -0.7090 1.2790 31 8 2.0068 -0.6740 1.1664 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5142 0.8897 34 1 -0.3633 0.5134 -0.8903 35 1 1.7148 -0.1844 -2.1399 36 1 1.6445 -1.7375 -1.2709 37 1 6.0582 0.0775 -1.1856 38 1 7.6223 3.3389 -0.3126 39 1 7.6107 1.5687 0.0934 40 1 9.6708 3.0402 -1.5902 41 1 10.2889 1.1551 -2.9941 42 1 9.3655 1.9301 -4.3036 43 1 11.9347 1.6502 -5.0692 44 1 14.5622 1.3422 -7.1044 45 1 6.2453 1.9871 -3.4602 46 1 6.6599 3.6344 -2.8156 47 1 3.6618 -2.4898 0.0863 48 1 5.1062 -1.4490 0.1420 49 1 3.8193 0.3094 1.2957 50 1 3.7103 -1.2198 2.2005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752672176.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:34 Heat of formation + Delta-G solvation = -131.064910 kcal Electronic energy + Delta-G solvation = -29339.310452 eV Core-core repulsion = 25172.550360 eV Total energy + Delta-G solvation = -4166.760092 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86378 -40.53860 -39.92153 -38.82297 -36.14335 -35.47473 -34.82077 -33.84846 -33.29247 -32.94337 -28.87088 -28.50392 -26.70628 -26.42099 -25.61689 -24.14021 -23.52429 -22.59592 -21.16840 -20.71319 -20.31029 -19.88360 -18.04160 -17.69849 -17.28263 -17.19632 -17.02508 -16.83928 -16.41954 -16.18044 -16.15529 -15.72159 -15.61027 -15.23327 -15.12776 -14.78833 -14.74368 -14.15753 -13.70377 -13.53626 -13.50420 -13.38960 -13.31096 -13.25427 -13.02281 -12.93911 -12.88587 -12.81106 -12.53963 -12.43056 -12.12493 -12.04305 -11.71594 -11.55039 -11.52300 -11.48907 -11.39386 -10.81683 -10.33877 -10.25272 -10.03057 -10.01933 -9.30584 -8.47014 -5.95822 1.39719 1.41858 1.52603 1.57426 2.05175 2.10758 2.29148 2.86038 2.96277 3.20396 3.47712 3.54444 3.55670 3.62588 3.71898 3.80069 3.97003 3.97697 4.10327 4.12843 4.28632 4.30097 4.42512 4.47321 4.52986 4.57276 4.59216 4.67972 4.72350 4.80880 4.81430 4.86065 4.87091 4.96379 4.99622 5.05525 5.08084 5.09723 5.13380 5.24237 5.30835 5.40392 5.57732 5.93141 6.16641 6.31508 6.43623 6.52876 6.59964 7.12227 7.23767 7.55997 8.11445 8.70008 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032897 B = 0.001637 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.935731 B =17098.883700 C =17276.572302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.056 0.944 4 C -0.127 4.127 5 C -0.110 4.110 6 H 0.128 0.872 7 C 0.515 3.485 8 O -0.575 6.575 9 N -0.698 5.698 10 C 0.127 3.873 11 H 0.087 0.913 12 C -0.133 4.133 13 C 0.061 3.939 14 H 0.092 0.908 15 N -0.673 5.673 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.337 4.337 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.273 1.273 28 C -0.139 4.139 29 C -0.139 4.139 30 C 0.052 3.948 31 O -0.398 6.398 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.415 0.585 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.347 0.653 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.032 0.968 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.498 -13.016 12.764 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.014 3.986 3 H 0.074 0.926 4 C -0.165 4.165 5 C -0.131 4.131 6 H 0.146 0.854 7 C 0.303 3.697 8 O -0.454 6.454 9 N -0.350 5.350 10 C 0.020 3.980 11 H 0.105 0.895 12 C -0.172 4.172 13 C -0.049 4.049 14 H 0.109 0.891 15 N -0.305 5.305 16 C -0.066 4.066 17 C 0.223 3.777 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.178 4.178 29 C -0.177 4.177 30 C -0.025 4.025 31 O -0.318 6.318 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.252 0.748 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.167 0.833 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.050 0.950 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.257 -11.448 12.606 28.825 hybrid contribution 1.681 -0.413 -0.417 1.781 sum -21.576 -11.861 12.189 27.473 Atomic orbital electron populations 1.21743 0.92456 1.03059 1.02562 1.22352 0.95771 0.95655 0.84841 0.92628 1.21995 0.93479 1.02344 0.98661 1.21517 0.97134 0.92227 1.02247 0.85410 1.21143 0.82155 0.92044 0.74346 1.90663 1.58446 1.45495 1.50809 1.45626 1.06773 1.08353 1.74210 1.21544 0.94816 0.84702 0.96938 0.89486 1.23500 0.93405 1.04112 0.96134 1.23222 0.89245 0.96229 0.96157 0.89065 1.60175 1.09783 1.44541 1.16050 1.21579 0.92087 0.94677 0.98290 1.20950 0.85936 0.88270 0.82509 1.90491 1.78665 1.25237 1.56716 1.41930 1.21159 1.19976 1.37934 1.19639 1.01092 1.02475 1.23402 0.90371 1.26027 1.01629 0.97714 0.95801 1.69660 1.38177 1.19461 1.28711 0.84995 0.77273 0.77897 0.78211 1.19634 1.19441 1.19880 1.23511 0.95365 1.01861 0.97102 1.22206 1.02691 1.00867 0.91952 1.22722 0.80696 0.99191 0.99879 1.87882 1.21818 1.78129 1.43980 0.91233 0.92500 0.90450 0.90932 0.88880 0.74788 0.88436 0.88666 0.83280 0.91111 0.88355 0.76952 0.91277 0.91741 0.90071 0.88252 0.88082 0.94966 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.57 71.98 0.69 -1.41 16 2 C 0.07 1.28 2.97 30.62 0.09 1.38 16 3 H 0.06 1.33 5.80 -2.38 -0.01 1.31 16 4 C -0.13 -1.76 4.56 30.68 0.14 -1.62 16 5 C -0.11 -1.23 3.04 -11.42 -0.03 -1.27 16 6 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 7 C 0.52 8.93 5.82 87.66 0.51 9.44 16 8 O -0.57 -14.96 13.44 -3.04 -0.04 -15.00 16 9 N -0.70 -9.45 5.14 -440.03 -2.26 -11.71 16 10 C 0.13 2.25 4.32 45.52 0.20 2.45 16 11 H 0.09 1.91 7.47 -2.39 -0.02 1.90 16 12 C -0.13 -2.12 7.40 31.12 0.23 -1.89 16 13 C 0.06 1.22 4.02 45.44 0.18 1.40 16 14 H 0.09 1.46 7.87 -2.39 -0.02 1.44 16 15 N -0.67 -19.76 6.18 -492.88 -3.05 -22.81 16 16 C 0.07 2.15 6.01 85.56 0.51 2.67 16 17 C 0.44 20.42 7.82 87.66 0.69 21.11 16 18 O -0.62 -34.39 15.78 -3.06 -0.05 -34.44 16 19 N -0.57 -29.08 5.29 -306.99 -1.62 -30.70 16 20 C -0.34 -19.04 9.68 84.04 0.81 -18.23 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 23 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 24 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 C -0.14 -2.96 7.68 31.12 0.24 -2.72 16 29 C -0.14 -1.10 5.57 30.68 0.17 -0.93 16 30 C 0.05 0.68 6.62 72.01 0.48 1.16 16 31 O -0.40 -7.43 10.41 -148.98 -1.55 -8.98 16 32 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.13 8.03 -2.39 -0.02 1.11 16 36 H 0.09 0.99 8.14 -2.38 -0.02 0.98 16 37 H 0.41 3.13 8.12 -92.71 -0.75 2.38 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.35 10.61 8.24 -89.69 -0.74 9.87 16 41 H 0.07 1.93 8.13 -2.39 -0.02 1.92 16 42 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 44 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 46 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.10 0.36 7.52 -2.39 -0.02 0.34 16 49 H 0.03 0.53 7.38 -2.39 -0.02 0.51 16 50 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -74.01 400.35 -2.14 -76.15 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -1.25 Total: 40.26 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.37 Total: 11.36 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -6.65 Total: -114.02 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -1.64 Total: -58.42 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -74.01 -2.14 -76.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752672176.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.915 kcal (2) G-P(sol) polarization free energy of solvation -74.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds