Wall clock time and date at job start Sat Apr 11 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47397 * 2 1 4 4 C 1.53008 * 109.46818 * 119.99953 * 2 1 3 5 5 C 1.50696 * 109.47024 * 294.99841 * 4 2 1 6 6 O 1.21283 * 120.00283 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99882 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00005 * 180.02562 * 7 5 4 9 9 C 1.53936 * 113.83039 * 106.32600 * 8 7 5 10 10 N 1.47963 * 86.18081 * 90.64735 * 9 8 7 11 11 C 1.46905 * 110.99442 * 137.58205 * 10 9 8 12 12 C 1.50701 * 109.47159 * 70.64116 * 11 10 9 13 13 O 1.21289 * 119.99845 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99976 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00115 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00206 * 0.02562 * 15 14 12 17 17 C 1.38953 * 120.00229 * 180.02562 * 15 14 12 18 18 N 1.31405 * 120.00266 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99865 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47173 * 90.00244 * 19 17 15 21 21 H 1.48501 * 109.47037 * 210.00808 * 19 17 15 22 22 H 1.48507 * 109.47259 * 330.00314 * 19 17 15 23 23 C 1.47962 * 90.76258 * 24.69072 * 10 9 8 24 24 C 1.52992 * 109.47225 * 239.99821 * 2 1 3 25 25 H 1.09006 * 110.27623 * 300.64114 * 24 2 1 26 26 C 1.54944 * 110.30975 * 62.83495 * 24 2 1 27 27 C 1.55308 * 100.94185 * 155.35819 * 26 24 2 28 28 C 1.54377 * 102.25355 * 325.86918 * 27 26 24 29 29 O 1.43234 * 107.58938 * 21.35734 * 28 27 26 30 30 H 1.08995 * 109.47397 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47137 * 299.99995 * 1 2 3 32 32 H 1.08999 * 109.46912 * 60.00017 * 1 2 3 33 33 H 1.09002 * 109.46604 * 174.99789 * 4 2 1 34 34 H 1.08997 * 109.46838 * 54.99891 * 4 2 1 35 35 H 0.97002 * 120.00027 * 359.97438 * 7 5 4 36 36 H 1.09002 * 112.93917 * 334.66429 * 8 7 5 37 37 H 1.09003 * 113.75649 * 204.96870 * 9 8 7 38 38 H 1.09007 * 113.75829 * 336.32990 * 9 8 7 39 39 H 1.08998 * 109.46445 * 190.64141 * 11 10 9 40 40 H 1.09000 * 109.47062 * 310.63837 * 11 10 9 41 41 H 0.97005 * 119.99820 * 0.02562 * 14 12 11 42 42 H 0.97002 * 120.00299 * 179.97438 * 18 17 15 43 43 H 1.08991 * 113.75516 * 220.99362 * 23 10 9 44 44 H 1.08998 * 113.86153 * 89.63735 * 23 10 9 45 45 H 1.09002 * 111.12883 * 273.27787 * 26 24 2 46 46 H 1.09000 * 111.12517 * 37.44242 * 26 24 2 47 47 H 1.09005 * 110.84782 * 207.67476 * 27 26 24 48 48 H 1.09007 * 111.02261 * 84.13913 * 27 26 24 49 49 H 1.08995 * 109.83315 * 261.84189 * 28 27 26 50 50 H 1.09004 * 109.83213 * 140.86784 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9853 -0.3914 3.7002 8 6 1.5972 0.3650 4.8933 9 6 0.4555 -0.2835 5.6967 10 7 1.5178 -0.9813 6.4544 11 6 1.2197 -0.9893 7.8929 12 6 0.0600 -1.9137 8.1604 13 8 -0.4668 -2.5070 7.2430 14 7 -0.3919 -2.0810 9.4191 15 6 -1.4466 -2.9223 9.6626 16 1 -1.9151 -3.4513 8.8459 17 6 -1.9128 -3.0945 10.9602 18 7 -2.9234 -3.9013 11.1937 19 14 -1.1020 -2.1801 12.3729 20 1 -1.7777 -0.8723 12.5687 21 1 -1.2154 -2.9867 13.6146 22 1 0.3317 -1.9543 12.0585 23 6 2.4855 0.0866 6.1193 24 6 2.0400 -0.7212 -1.2491 25 1 1.6746 -1.7481 -1.2681 26 6 1.5938 0.0342 -2.5262 27 6 2.6826 -0.4232 -3.5349 28 6 3.9301 -0.5515 -2.6346 29 8 3.4759 -0.7023 -1.2846 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.1263 -0.7995 1.2056 34 1 1.6053 -1.7198 1.2952 35 1 2.4891 -1.2153 3.7908 36 1 1.4455 1.4256 4.6932 37 1 -0.1179 0.4247 6.2950 38 1 -0.1732 -0.9503 5.1065 39 1 2.0946 -1.3353 8.4432 40 1 0.9625 0.0194 8.2162 41 1 0.0292 -1.6061 10.1527 42 1 -3.2486 -4.0217 12.0995 43 1 3.4788 -0.2844 5.8668 44 1 2.5075 0.9038 6.8403 45 1 0.6024 -0.2863 -2.8462 46 1 1.6262 1.1133 -2.3758 47 1 2.8372 0.3305 -4.3070 48 1 2.4246 -1.3844 -3.9796 49 1 4.5422 0.3462 -2.7207 50 1 4.5104 -1.4259 -2.9293 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753392977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:50 Heat of formation + Delta-G solvation = -84.467132 kcal Electronic energy + Delta-G solvation = -29205.751666 eV Core-core repulsion = 25041.012205 eV Total energy + Delta-G solvation = -4164.739461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -40.64520 -40.00829 -39.03618 -37.82177 -35.04373 -34.09080 -33.72584 -32.48403 -31.69162 -30.16768 -28.83419 -27.66855 -26.06259 -25.55420 -23.84846 -23.19676 -22.05661 -21.05107 -20.12036 -19.74941 -19.34769 -18.34827 -17.39801 -17.04296 -16.29325 -16.16951 -16.07635 -15.58166 -15.30298 -15.13513 -15.01464 -14.79145 -14.23378 -13.95931 -13.76430 -13.59028 -13.32448 -13.14044 -12.97300 -12.76084 -12.60398 -12.39859 -12.23819 -12.14956 -11.96469 -11.72270 -11.61189 -11.49864 -11.24425 -11.17212 -11.09051 -11.02142 -10.99401 -10.76909 -10.60483 -9.98143 -9.85754 -9.70770 -9.57361 -9.05532 -8.76400 -8.35818 -8.18181 -6.31561 -3.82983 2.59807 3.01808 3.05820 3.06154 3.14286 3.42476 3.72499 3.94443 4.09297 4.09608 4.29903 4.40100 4.47680 4.58441 4.69474 4.74133 4.79089 4.87551 4.94355 5.00120 5.15032 5.18267 5.30022 5.32623 5.32914 5.35667 5.42110 5.43961 5.47307 5.53155 5.54419 5.57685 5.62053 5.66896 5.74075 5.75900 5.86810 5.91974 6.10636 6.13519 6.23773 6.46022 6.58297 6.70673 7.04686 7.49965 7.57223 8.13495 8.21132 8.59286 8.94587 9.41783 9.82437 10.81588 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.001741 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.815729 B =16076.289895 C =16469.355236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.069 4.069 3 H 0.084 0.916 4 C -0.135 4.135 5 C 0.517 3.483 6 O -0.543 6.543 7 N -0.704 5.704 8 C 0.114 3.886 9 C 0.009 3.991 10 N -0.453 5.453 11 C 0.006 3.994 12 C 0.452 3.548 13 O -0.560 6.560 14 N -0.591 5.591 15 C -0.305 4.305 16 H 0.119 0.881 17 C 0.041 3.959 18 N -0.881 5.881 19 Si 0.880 3.120 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.270 1.270 23 C -0.009 4.009 24 C 0.084 3.916 25 H 0.073 0.927 26 C -0.150 4.150 27 C -0.158 4.158 28 C 0.051 3.949 29 O -0.380 6.380 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.407 0.593 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.924 10.541 -23.707 29.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.088 4.088 3 H 0.102 0.898 4 C -0.175 4.175 5 C 0.304 3.696 6 O -0.420 6.420 7 N -0.355 5.355 8 C 0.007 3.993 9 C -0.121 4.121 10 N -0.176 5.176 11 C -0.126 4.126 12 C 0.238 3.762 13 O -0.442 6.442 14 N -0.231 5.231 15 C -0.433 4.433 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.521 5.521 19 Si 0.706 3.294 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.139 4.139 24 C 0.026 3.974 25 H 0.090 0.910 26 C -0.187 4.187 27 C -0.196 4.196 28 C -0.026 4.026 29 O -0.299 6.299 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.242 0.758 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.240 10.052 -24.206 29.829 hybrid contribution 0.475 0.904 1.644 1.935 sum 14.715 10.956 -22.562 29.079 Atomic orbital electron populations 1.21957 0.93656 1.01963 1.03553 1.20997 0.96469 0.99962 0.91410 0.89806 1.21688 1.03642 1.00105 0.92062 1.20725 0.78703 0.85568 0.84579 1.90654 1.39831 1.24859 1.86667 1.45617 1.57481 1.27585 1.04775 1.22346 0.95551 0.96774 0.84607 1.24291 0.95006 0.96805 0.95974 1.68451 1.06007 1.36569 1.06544 1.22503 0.99327 0.99019 0.91718 1.19586 0.86494 0.86580 0.83562 1.90564 1.59987 1.50319 1.43302 1.42213 1.31757 1.42410 1.06716 1.19423 1.07244 1.20833 0.95838 0.86320 1.25036 0.96503 0.97191 0.97432 1.69618 1.24869 1.35996 1.21652 0.86670 0.79460 0.80397 0.82841 1.19668 1.20154 1.19510 1.24401 0.98514 0.94908 0.96073 1.23094 0.80755 0.98742 0.94783 0.90963 1.23298 0.99459 1.01486 0.94500 1.23132 0.95249 1.02484 0.98695 1.23090 0.96318 1.01210 0.81958 1.88405 1.20617 1.94736 1.26188 0.92957 0.89898 0.92708 0.88138 0.88764 0.75773 0.87960 0.90761 0.88441 0.89022 0.92581 0.79744 0.91616 0.88935 0.90195 0.89747 0.90100 0.90113 0.90551 0.91455 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.74 37.16 0.32 -1.11 16 2 C -0.07 -0.63 1.81 -90.62 -0.16 -0.79 16 3 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 4 C -0.14 -1.24 5.11 -27.88 -0.14 -1.38 16 5 C 0.52 6.14 7.55 -10.99 -0.08 6.05 16 6 O -0.54 -8.09 13.59 5.55 0.08 -8.01 16 7 N -0.70 -7.89 5.38 -54.94 -0.30 -8.19 16 8 C 0.11 1.38 4.40 -69.62 -0.31 1.08 16 9 C 0.01 0.14 6.56 -2.76 -0.02 0.12 16 10 N -0.45 -6.93 5.95 -239.87 -1.43 -8.36 16 11 C 0.01 0.11 5.31 -4.97 -0.03 0.08 16 12 C 0.45 10.28 7.59 -10.99 -0.08 10.20 16 13 O -0.56 -15.04 15.12 5.55 0.08 -14.96 16 14 N -0.59 -14.12 5.09 -10.97 -0.06 -14.18 16 15 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 16 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 17 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 18 N -0.88 -25.84 13.96 55.50 0.77 -25.06 16 19 Si 0.88 19.39 27.74 -169.99 -4.71 14.68 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 23 C -0.01 -0.10 7.71 -2.76 -0.02 -0.12 16 24 C 0.08 0.66 2.96 -25.71 -0.08 0.58 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 C -0.15 -0.93 5.55 -24.48 -0.14 -1.07 16 27 C -0.16 -0.82 7.02 -24.79 -0.17 -1.00 16 28 C 0.05 0.34 7.79 37.88 0.30 0.63 16 29 O -0.38 -3.48 10.39 -35.23 -0.37 -3.84 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.99 5.95 -51.93 -0.31 0.68 16 32 H 0.05 0.44 7.28 -51.93 -0.38 0.06 16 33 H 0.10 0.86 7.62 -51.93 -0.40 0.46 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.41 3.98 8.74 -40.82 -0.36 3.63 16 36 H 0.10 1.26 7.51 -51.93 -0.39 0.87 16 37 H 0.07 1.12 7.78 -51.93 -0.40 0.72 16 38 H 0.10 1.76 8.09 -51.93 -0.42 1.34 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 0.79 7.69 -51.93 -0.40 0.39 16 41 H 0.37 7.74 5.76 -40.82 -0.24 7.51 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 0.75 7.80 -51.93 -0.40 0.35 16 45 H 0.08 0.45 8.05 -51.93 -0.42 0.03 16 46 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -34.78 398.96 -9.07 -43.85 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -8.30 Total: 12.56 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -0.86 Total: 5.50 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -1.00 Total: -55.79 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.21 Total: -26.81 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.78 -9.07 -43.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753392977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.618 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds