Wall clock time and date at job start Sat Apr 11 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47397 * 2 1 4 4 C 1.53008 * 109.46818 * 119.99953 * 2 1 3 5 5 C 1.50696 * 109.47024 * 294.99841 * 4 2 1 6 6 O 1.21283 * 120.00283 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99882 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00005 * 180.02562 * 7 5 4 9 9 C 1.53936 * 113.83039 * 106.32600 * 8 7 5 10 10 N 1.47963 * 86.18081 * 90.64735 * 9 8 7 11 11 C 1.46905 * 110.99442 * 137.58205 * 10 9 8 12 12 C 1.50701 * 109.47159 * 70.64116 * 11 10 9 13 13 O 1.21289 * 119.99845 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99976 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00115 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00206 * 0.02562 * 15 14 12 17 17 C 1.38953 * 120.00229 * 180.02562 * 15 14 12 18 18 N 1.31405 * 120.00266 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99865 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47173 * 90.00244 * 19 17 15 21 21 H 1.48501 * 109.47037 * 210.00808 * 19 17 15 22 22 H 1.48507 * 109.47259 * 330.00314 * 19 17 15 23 23 C 1.47962 * 90.76258 * 24.69072 * 10 9 8 24 24 C 1.52992 * 109.47225 * 239.99821 * 2 1 3 25 25 H 1.09006 * 110.27623 * 300.64114 * 24 2 1 26 26 C 1.54944 * 110.30975 * 62.83495 * 24 2 1 27 27 C 1.55308 * 100.94185 * 155.35819 * 26 24 2 28 28 C 1.54377 * 102.25355 * 325.86918 * 27 26 24 29 29 O 1.43234 * 107.58938 * 21.35734 * 28 27 26 30 30 H 1.08995 * 109.47397 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47137 * 299.99995 * 1 2 3 32 32 H 1.08999 * 109.46912 * 60.00017 * 1 2 3 33 33 H 1.09002 * 109.46604 * 174.99789 * 4 2 1 34 34 H 1.08997 * 109.46838 * 54.99891 * 4 2 1 35 35 H 0.97002 * 120.00027 * 359.97438 * 7 5 4 36 36 H 1.09002 * 112.93917 * 334.66429 * 8 7 5 37 37 H 1.09003 * 113.75649 * 204.96870 * 9 8 7 38 38 H 1.09007 * 113.75829 * 336.32990 * 9 8 7 39 39 H 1.08998 * 109.46445 * 190.64141 * 11 10 9 40 40 H 1.09000 * 109.47062 * 310.63837 * 11 10 9 41 41 H 0.97005 * 119.99820 * 0.02562 * 14 12 11 42 42 H 0.97002 * 120.00299 * 179.97438 * 18 17 15 43 43 H 1.08991 * 113.75516 * 220.99362 * 23 10 9 44 44 H 1.08998 * 113.86153 * 89.63735 * 23 10 9 45 45 H 1.09002 * 111.12883 * 273.27787 * 26 24 2 46 46 H 1.09000 * 111.12517 * 37.44242 * 26 24 2 47 47 H 1.09005 * 110.84782 * 207.67476 * 27 26 24 48 48 H 1.09007 * 111.02261 * 84.13913 * 27 26 24 49 49 H 1.08995 * 109.83315 * 261.84189 * 28 27 26 50 50 H 1.09004 * 109.83213 * 140.86784 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9853 -0.3914 3.7002 8 6 1.5972 0.3650 4.8933 9 6 0.4555 -0.2835 5.6967 10 7 1.5178 -0.9813 6.4544 11 6 1.2197 -0.9893 7.8929 12 6 0.0600 -1.9137 8.1604 13 8 -0.4668 -2.5070 7.2430 14 7 -0.3919 -2.0810 9.4191 15 6 -1.4466 -2.9223 9.6626 16 1 -1.9151 -3.4513 8.8459 17 6 -1.9128 -3.0945 10.9602 18 7 -2.9234 -3.9013 11.1937 19 14 -1.1020 -2.1801 12.3729 20 1 -1.7777 -0.8723 12.5687 21 1 -1.2154 -2.9867 13.6146 22 1 0.3317 -1.9543 12.0585 23 6 2.4855 0.0866 6.1193 24 6 2.0400 -0.7212 -1.2491 25 1 1.6746 -1.7481 -1.2681 26 6 1.5938 0.0342 -2.5262 27 6 2.6826 -0.4232 -3.5349 28 6 3.9301 -0.5515 -2.6346 29 8 3.4759 -0.7023 -1.2846 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.1263 -0.7995 1.2056 34 1 1.6053 -1.7198 1.2952 35 1 2.4891 -1.2153 3.7908 36 1 1.4455 1.4256 4.6932 37 1 -0.1179 0.4247 6.2950 38 1 -0.1732 -0.9503 5.1065 39 1 2.0946 -1.3353 8.4432 40 1 0.9625 0.0194 8.2162 41 1 0.0292 -1.6061 10.1527 42 1 -3.2486 -4.0217 12.0995 43 1 3.4788 -0.2844 5.8668 44 1 2.5075 0.9038 6.8403 45 1 0.6024 -0.2863 -2.8462 46 1 1.6262 1.1133 -2.3758 47 1 2.8372 0.3305 -4.3070 48 1 2.4246 -1.3844 -3.9796 49 1 4.5422 0.3462 -2.7207 50 1 4.5104 -1.4259 -2.9293 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753392977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:48 Heat of formation + Delta-G solvation = -113.578605 kcal Electronic energy + Delta-G solvation = -29207.014034 eV Core-core repulsion = 25041.012205 eV Total energy + Delta-G solvation = -4166.001829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.69279 -40.80805 -40.14074 -39.38829 -36.03595 -35.77272 -34.88920 -33.76766 -33.00469 -31.37447 -29.57177 -28.46486 -27.28970 -27.05671 -25.06382 -24.17376 -22.57126 -21.83216 -21.35382 -20.93703 -20.69815 -20.19852 -18.29234 -17.81816 -17.68641 -17.22970 -16.95648 -16.70677 -16.56036 -16.36650 -16.16313 -15.79663 -15.32260 -15.21776 -14.84432 -14.73902 -14.50038 -14.34568 -14.12418 -13.97390 -13.74123 -13.54115 -13.35308 -13.08334 -12.94115 -12.73756 -12.67733 -12.43133 -12.30682 -12.22424 -12.12396 -11.98302 -11.90936 -11.79069 -11.65690 -11.60271 -11.51465 -10.73328 -10.42739 -10.38637 -10.26010 -10.06220 -9.68901 -8.42354 -6.03439 1.29279 1.34830 1.43946 1.64529 1.95077 2.16626 2.22223 2.68461 2.86848 3.11389 3.14723 3.53027 3.59226 3.68420 3.78879 3.82272 4.03595 4.09185 4.13340 4.16711 4.24746 4.31024 4.40960 4.41516 4.49250 4.50808 4.53174 4.64646 4.67705 4.72253 4.81290 4.83626 4.86285 4.89569 4.93811 5.00449 5.01614 5.14341 5.24971 5.33233 5.37369 5.42134 5.51967 5.59830 5.88032 5.98661 6.14310 6.58346 6.59357 6.87225 7.28716 7.38537 7.96180 8.75420 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.001741 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.815729 B =16076.289895 C =16469.355236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 H 0.066 0.934 4 C -0.129 4.129 5 C 0.514 3.486 6 O -0.576 6.576 7 N -0.700 5.700 8 C 0.122 3.878 9 C 0.001 3.999 10 N -0.477 5.477 11 C 0.018 3.982 12 C 0.449 3.551 13 O -0.611 6.611 14 N -0.592 5.592 15 C -0.329 4.329 16 H 0.052 0.948 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.230 1.230 23 C 0.011 3.989 24 C 0.084 3.916 25 H 0.078 0.922 26 C -0.150 4.150 27 C -0.152 4.152 28 C 0.042 3.958 29 O -0.401 6.401 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.415 0.585 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.070 0.930 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.178 12.412 -23.176 31.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 H 0.085 0.915 4 C -0.169 4.169 5 C 0.302 3.698 6 O -0.456 6.456 7 N -0.350 5.350 8 C 0.015 3.985 9 C -0.130 4.130 10 N -0.200 5.200 11 C -0.113 4.113 12 C 0.237 3.763 13 O -0.495 6.495 14 N -0.234 5.234 15 C -0.458 4.458 16 H 0.071 0.929 17 C -0.214 4.214 18 N -0.576 5.576 19 Si 0.786 3.214 20 H -0.182 1.182 21 H -0.200 1.200 22 H -0.153 1.153 23 C -0.118 4.118 24 C 0.027 3.973 25 H 0.096 0.904 26 C -0.188 4.188 27 C -0.189 4.189 28 C -0.034 4.034 29 O -0.322 6.322 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.252 0.748 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.089 0.911 43 H 0.133 0.867 44 H 0.126 0.874 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.103 0.897 49 H 0.089 0.911 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.538 11.924 -23.690 31.796 hybrid contribution -0.603 0.256 1.344 1.496 sum 16.935 12.180 -22.346 30.569 Atomic orbital electron populations 1.21880 0.94001 1.02085 1.02705 1.20930 0.96124 0.99206 0.92193 0.91525 1.21703 1.04285 1.00077 0.90793 1.21210 0.77943 0.85254 0.85378 1.90642 1.41319 1.26449 1.87154 1.45632 1.57092 1.27802 1.04516 1.22248 0.94533 0.96445 0.85266 1.24237 0.95621 0.96355 0.96767 1.68435 1.06862 1.38933 1.05787 1.22485 0.97091 0.98744 0.93024 1.20932 0.87078 0.85982 0.82337 1.90549 1.61851 1.52260 1.44837 1.42038 1.31034 1.42250 1.08040 1.18986 1.09465 1.22516 0.94870 0.92937 1.26139 0.96790 0.97838 1.00679 1.69806 1.26865 1.37959 1.22941 0.85345 0.80275 0.78686 0.77076 1.18188 1.20014 1.15293 1.24477 0.98101 0.94175 0.95041 1.23077 0.80523 0.99002 0.94679 0.90417 1.23310 1.00417 1.01038 0.94022 1.23129 0.93984 1.03365 0.98449 1.23268 0.97081 1.01806 0.81239 1.88370 1.21136 1.94846 1.27819 0.92300 0.92812 0.91428 0.87081 0.87676 0.74837 0.87887 0.90841 0.92511 0.85878 0.89186 0.77466 0.91149 0.86672 0.87358 0.88659 0.90589 0.88777 0.89679 0.91131 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.74 71.98 0.63 -2.20 16 2 C -0.07 -1.18 1.81 -10.79 -0.02 -1.20 16 3 H 0.07 1.43 7.96 -2.39 -0.02 1.42 16 4 C -0.13 -2.32 5.11 29.85 0.15 -2.16 16 5 C 0.51 12.21 7.55 87.65 0.66 12.88 16 6 O -0.58 -17.60 13.59 -3.04 -0.04 -17.64 16 7 N -0.70 -15.18 5.38 -446.11 -2.40 -17.58 16 8 C 0.12 2.80 4.40 46.56 0.20 3.00 16 9 C 0.00 0.02 6.56 86.41 0.57 0.59 16 10 N -0.48 -13.64 5.95 -912.82 -5.43 -19.07 16 11 C 0.02 0.53 5.31 85.56 0.45 0.99 16 12 C 0.45 20.37 7.59 87.66 0.67 21.04 16 13 O -0.61 -34.32 15.12 -3.06 -0.05 -34.37 16 14 N -0.59 -28.01 5.09 -306.99 -1.56 -29.58 16 15 C -0.33 -19.49 10.16 84.04 0.85 -18.63 16 16 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 17 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 18 N -0.94 -56.84 13.96 21.66 0.30 -56.54 16 19 Si 0.97 38.79 27.74 68.60 1.90 40.69 16 20 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 21 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 23 C 0.01 0.19 7.71 86.41 0.67 0.86 16 24 C 0.08 1.25 2.96 31.26 0.09 1.34 16 25 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 26 C -0.15 -1.67 5.55 32.05 0.18 -1.50 16 27 C -0.15 -1.30 7.02 31.85 0.22 -1.08 16 28 C 0.04 0.50 7.79 72.45 0.56 1.06 16 29 O -0.40 -6.95 10.39 -148.98 -1.55 -8.50 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.35 5.95 -2.39 -0.01 1.34 16 32 H 0.07 1.06 7.28 -2.39 -0.02 1.05 16 33 H 0.11 1.78 7.62 -2.39 -0.02 1.76 16 34 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 7.62 8.74 -92.71 -0.81 6.81 16 36 H 0.10 2.40 7.51 -2.39 -0.02 2.39 16 37 H 0.07 2.21 7.78 -2.39 -0.02 2.20 16 38 H 0.06 2.18 8.09 -2.38 -0.02 2.16 16 39 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.09 2.12 7.69 -2.39 -0.02 2.10 16 41 H 0.39 15.13 5.76 -92.70 -0.53 14.60 16 42 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.11 1.44 7.80 -2.39 -0.02 1.42 16 45 H 0.09 0.85 8.05 -2.39 -0.02 0.83 16 46 H 0.08 0.92 8.06 -2.39 -0.02 0.90 16 47 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 48 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 49 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -83.30 398.96 -2.91 -86.21 By element: Atomic # 1 Polarization: 42.26 SS G_CDS: -0.45 Total: 41.81 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 6.36 Total: 14.56 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -9.09 Total: -122.76 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -1.64 Total: -60.51 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.69 kcal Total: -83.30 -2.91 -86.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753392977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.371 kcal (2) G-P(sol) polarization free energy of solvation -83.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds