Wall clock time and date at job start Sat Apr 11 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99522 * 2 1 4 4 H 1.08996 * 109.99174 * 358.91770 * 3 2 1 5 5 O 1.43745 * 109.87491 * 237.83396 * 3 2 1 6 6 C 1.44383 * 106.97604 * 267.08919 * 5 3 2 7 7 C 1.55003 * 103.48980 * 319.94510 * 6 5 3 8 8 C 1.54103 * 109.87538 * 120.00328 * 3 2 1 9 9 H 1.09000 * 110.48704 * 358.58555 * 8 3 2 10 10 C 1.50700 * 110.48620 * 236.06775 * 8 3 2 11 11 O 1.21283 * 119.99803 * 0.02562 * 10 8 3 12 12 N 1.34777 * 119.99675 * 180.27965 * 10 8 3 13 13 C 1.46496 * 120.00345 * 359.72090 * 12 10 8 14 14 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 15 15 H 1.08996 * 109.47805 * 359.97438 * 14 12 10 16 16 C 1.53001 * 109.47063 * 239.99409 * 14 12 10 17 17 C 1.53007 * 109.47236 * 119.99976 * 14 12 10 18 18 N 1.46899 * 109.46878 * 304.99822 * 17 14 12 19 19 C 1.46898 * 111.00368 * 180.02562 * 18 17 14 20 20 C 1.50697 * 109.47396 * 180.02562 * 19 18 17 21 21 O 1.21287 * 120.00358 * 359.97438 * 20 19 18 22 22 N 1.34775 * 119.99845 * 179.97438 * 20 19 18 23 23 C 1.37097 * 120.00025 * 179.97438 * 22 20 19 24 24 H 1.08002 * 119.99859 * 359.97438 * 23 22 20 25 25 C 1.38954 * 120.00068 * 180.02562 * 23 22 20 26 26 N 1.31417 * 119.99780 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 119.99943 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46783 * 90.00895 * 27 25 23 29 29 H 1.48500 * 109.47238 * 210.00063 * 27 25 23 30 30 H 1.48496 * 109.47570 * 330.00436 * 27 25 23 31 31 H 1.07992 * 120.00672 * 359.97438 * 1 2 3 32 32 H 1.08003 * 119.99407 * 180.02562 * 1 2 3 33 33 H 1.07997 * 119.99986 * 180.02562 * 2 1 3 34 34 H 1.09002 * 110.61695 * 78.44312 * 6 5 3 35 35 H 1.09002 * 110.62181 * 201.44286 * 6 5 3 36 36 H 1.09004 * 110.90571 * 278.82366 * 7 6 5 37 37 H 1.08995 * 110.90945 * 155.22120 * 7 6 5 38 38 H 1.08997 * 109.47115 * 90.00316 * 13 12 10 39 39 H 1.08995 * 109.47364 * 210.00706 * 13 12 10 40 40 H 1.09002 * 109.47090 * 330.00257 * 13 12 10 41 41 H 1.09003 * 109.47210 * 180.02562 * 16 14 12 42 42 H 1.08998 * 109.47418 * 300.00350 * 16 14 12 43 43 H 1.09004 * 109.46803 * 60.00270 * 16 14 12 44 44 H 1.08997 * 109.46884 * 64.99344 * 17 14 12 45 45 H 1.08997 * 109.47440 * 184.99904 * 17 14 12 46 46 H 1.00904 * 111.00095 * 303.95673 * 18 17 14 47 47 H 1.09008 * 109.46766 * 299.99906 * 19 18 17 48 48 H 1.08997 * 109.46959 * 59.99642 * 19 18 17 49 49 H 0.97003 * 120.00588 * 359.97438 * 22 20 19 50 50 H 0.97001 * 119.99574 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3628 2.1399 -0.0193 5 8 2.9310 1.3687 -1.1443 6 6 4.2185 0.8671 -0.7255 7 6 4.3944 1.4634 0.6944 8 6 2.9530 1.3967 1.2550 9 1 2.8247 0.5121 1.8789 10 6 2.6334 2.6439 2.0383 11 8 1.7740 3.4037 1.6444 12 7 3.3062 2.9174 3.1736 13 6 4.3438 1.9993 3.6496 14 6 2.9997 4.1329 3.9318 15 1 2.2076 4.6860 3.4271 16 6 4.2525 5.0064 4.0233 17 6 2.5391 3.7528 5.3405 18 7 1.4095 2.8180 5.2507 19 6 0.9392 2.4305 6.5874 20 6 -0.2169 1.4729 6.4552 21 8 -0.6107 1.1457 5.3557 22 7 -0.8132 0.9801 7.5588 23 6 -1.8653 0.1093 7.4386 24 1 -2.2165 -0.1814 6.4595 25 6 -2.4805 -0.3984 8.5764 26 7 -3.4887 -1.2335 8.4610 27 14 -1.8736 0.1050 10.2697 28 1 -2.6051 1.3172 10.7176 29 1 -2.1139 -1.0013 11.2308 30 1 -0.4194 0.3992 10.2072 31 1 -0.5401 0.9352 0.0004 32 1 -0.5399 -0.9354 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 4.2118 -0.2222 -0.6862 35 1 5.0045 1.2233 -1.3915 36 1 4.7443 2.4944 0.6426 37 1 5.0725 0.8534 1.2911 38 1 5.3059 2.2873 3.2259 39 1 4.3977 2.0444 4.7373 40 1 4.0998 0.9832 3.3397 41 1 4.0245 5.9106 4.5878 42 1 5.0449 4.4536 4.5278 43 1 4.5806 5.2772 3.0197 44 1 3.3615 3.2785 5.8760 45 1 2.2267 4.6498 5.8751 46 1 0.6582 3.2101 4.7030 47 1 1.7504 1.9472 7.1320 48 1 0.6156 3.3186 7.1302 49 1 -0.4981 1.2414 8.4382 50 1 -3.9178 -1.5882 9.2553 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753713769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:00 Heat of formation + Delta-G solvation = -81.220265 kcal Electronic energy + Delta-G solvation = -30675.077203 eV Core-core repulsion = 26510.478537 eV Total energy + Delta-G solvation = -4164.598666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -40.80739 -39.03606 -38.39767 -36.80203 -34.82819 -33.88042 -33.70688 -32.84757 -31.66058 -31.12388 -28.63058 -27.77247 -27.01642 -25.08331 -24.07475 -23.06653 -22.57815 -20.96426 -19.95846 -19.41836 -19.06864 -18.29819 -17.50369 -16.87058 -16.38012 -16.16736 -15.80607 -15.49081 -15.29062 -14.88897 -14.73864 -14.34062 -14.06563 -13.90155 -13.75308 -13.24832 -13.24470 -13.20634 -13.19826 -12.78594 -12.66627 -12.35320 -12.22042 -12.21540 -12.07859 -11.84108 -11.67421 -11.60068 -11.51469 -11.36648 -11.17179 -11.09042 -10.96890 -10.60783 -9.97977 -9.81320 -9.72748 -9.57377 -9.37753 -8.71730 -8.54093 -8.19624 -8.13155 -6.31241 -3.82575 2.23913 2.64881 2.90047 3.01094 3.05443 3.13749 3.74541 3.87609 4.03064 4.09823 4.26959 4.35558 4.54417 4.71764 4.83136 4.88366 4.90217 4.95409 5.01589 5.10405 5.14934 5.17614 5.21808 5.29778 5.34989 5.38161 5.40266 5.44505 5.45895 5.48576 5.61050 5.65159 5.71933 5.79066 5.82475 5.86091 5.91283 5.94678 6.03910 6.48521 6.62272 6.70505 6.80375 7.08232 7.34950 7.55585 7.58509 8.14656 8.19218 8.59951 8.95201 9.42399 9.83280 10.82008 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.002948 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.748642 B = 9495.231747 C =11131.787932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.187 4.187 3 C 0.116 3.884 4 H 0.121 0.879 5 O -0.364 6.364 6 C 0.045 3.955 7 C -0.142 4.142 8 C -0.135 4.135 9 H 0.114 0.886 10 C 0.536 3.464 11 O -0.538 6.538 12 N -0.590 5.590 13 C 0.083 3.917 14 C 0.137 3.863 15 H 0.100 0.900 16 C -0.157 4.157 17 C 0.047 3.953 18 N -0.663 5.663 19 C 0.049 3.951 20 C 0.450 3.550 21 O -0.561 6.561 22 N -0.592 5.592 23 C -0.304 4.304 24 H 0.119 0.881 25 C 0.041 3.959 26 N -0.882 5.882 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.277 1.277 30 H -0.270 1.270 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.353 0.647 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.383 8.302 -9.673 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.206 4.206 3 C 0.058 3.942 4 H 0.138 0.862 5 O -0.283 6.283 6 C -0.032 4.032 7 C -0.180 4.180 8 C -0.156 4.156 9 H 0.132 0.868 10 C 0.324 3.676 11 O -0.415 6.415 12 N -0.322 5.322 13 C -0.060 4.060 14 C 0.033 3.967 15 H 0.118 0.882 16 C -0.216 4.216 17 C -0.084 4.084 18 N -0.295 5.295 19 C -0.084 4.084 20 C 0.235 3.765 21 O -0.442 6.442 22 N -0.232 5.232 23 C -0.433 4.433 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.522 5.522 27 Si 0.707 3.293 28 H -0.197 1.197 29 H -0.202 1.202 30 H -0.195 1.195 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.056 0.944 46 H 0.172 0.828 47 H 0.103 0.897 48 H 0.061 0.939 49 H 0.202 0.798 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.822 7.865 -10.804 24.741 hybrid contribution 0.019 0.730 2.343 2.454 sum 20.841 8.595 -8.461 24.079 Atomic orbital electron populations 1.23953 0.95817 1.02496 0.96872 1.23165 0.96469 0.97967 1.02961 1.21877 0.92009 0.97137 0.83183 0.86199 1.88974 1.21320 1.84744 1.33276 1.23558 0.86748 0.98411 0.94483 1.23180 0.94927 1.02817 0.97114 1.22657 0.96482 0.98444 0.98026 0.86768 1.20060 0.80527 0.86612 0.80429 1.90660 1.32169 1.49967 1.68733 1.47431 1.37901 1.23239 1.23641 1.21748 0.89870 0.93571 1.00848 1.21091 0.98134 0.85662 0.91779 0.88152 1.22078 0.97446 0.99632 1.02424 1.22362 0.95193 0.94795 0.96004 1.60018 1.11579 1.44174 1.13774 1.21700 0.97624 0.97946 0.91135 1.19710 0.85882 0.85670 0.85201 1.90583 1.65862 1.62037 1.25738 1.42208 1.31630 1.42970 1.06350 1.19430 1.06749 1.20076 0.97027 0.86323 1.25039 0.96284 0.96726 0.98144 1.69627 1.21934 1.30573 1.30063 0.86667 0.78903 0.79213 0.84553 1.19689 1.20190 1.19540 0.88045 0.87957 0.87357 0.91921 0.88876 0.90168 0.89332 0.93080 0.90863 0.91022 0.91388 0.92181 0.92084 0.90826 0.94390 0.82752 0.89720 0.93910 0.79768 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 14.32 29.01 0.42 -1.62 16 2 C -0.19 -2.39 8.87 -36.02 -0.32 -2.71 16 3 C 0.12 1.52 3.44 -27.30 -0.09 1.43 16 4 H 0.12 1.87 6.11 -51.93 -0.32 1.55 16 5 O -0.36 -4.67 11.18 -35.23 -0.39 -5.06 16 6 C 0.04 0.39 7.66 38.22 0.29 0.68 16 7 C -0.14 -1.15 5.45 -24.72 -0.13 -1.29 16 8 C -0.13 -1.54 2.12 -90.24 -0.19 -1.73 16 9 H 0.11 1.29 6.85 -51.93 -0.36 0.93 16 10 C 0.54 7.34 6.93 -10.98 -0.08 7.26 16 11 O -0.54 -9.31 14.58 5.55 0.08 -9.23 16 12 N -0.59 -6.54 2.48 -173.94 -0.43 -6.98 16 13 C 0.08 0.67 8.19 59.84 0.49 1.16 16 14 C 0.14 1.45 2.88 -67.93 -0.20 1.26 16 15 H 0.10 1.30 6.90 -51.93 -0.36 0.94 16 16 C -0.16 -1.19 9.19 37.16 0.34 -0.85 16 17 C 0.05 0.51 4.93 -3.82 -0.02 0.50 16 18 N -0.66 -10.19 5.85 -115.06 -0.67 -10.86 16 19 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 20 C 0.45 10.23 7.82 -10.99 -0.09 10.15 16 21 O -0.56 -15.23 15.78 5.55 0.09 -15.15 16 22 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 23 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 24 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 25 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 26 N -0.88 -25.88 13.96 55.50 0.77 -25.10 16 27 Si 0.88 19.36 27.74 -169.99 -4.71 14.64 16 28 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 29 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 30 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 31 H 0.10 1.38 7.85 -52.49 -0.41 0.96 16 32 H 0.10 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 37 H 0.09 0.50 7.59 -51.93 -0.39 0.10 16 38 H 0.05 0.30 8.04 -51.93 -0.42 -0.12 16 39 H 0.07 0.58 6.53 -51.93 -0.34 0.24 16 40 H 0.07 0.58 6.07 -51.93 -0.32 0.27 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.71 6.88 -51.93 -0.36 0.36 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.35 6.18 8.43 -39.29 -0.33 5.85 16 47 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 50 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 402.39 15.07 6.06 6.06 Total: -1.00 -35.43 402.39 -7.12 -42.55 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -8.00 Total: 16.06 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 0.15 Total: 7.24 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.39 Total: -57.12 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.23 Total: -29.44 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.43 -7.12 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753713769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.668 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds