Wall clock time and date at job start Sat Apr 11 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00343 * 2 1 4 4 H 1.08998 * 109.46420 * 329.99552 * 3 2 1 5 5 C 1.52995 * 109.47084 * 89.99401 * 3 2 1 6 6 C 1.53002 * 109.47122 * 209.99945 * 3 2 1 7 7 C 1.50695 * 109.47004 * 64.99822 * 6 3 2 8 8 O 1.21274 * 120.00413 * 0.27039 * 7 6 3 9 9 N 1.34784 * 119.99635 * 179.97438 * 7 6 3 10 10 C 1.48318 * 128.20516 * 359.67811 * 9 7 6 11 11 C 1.54053 * 104.54517 * 221.91266 * 10 9 7 12 12 H 1.08995 * 112.42147 * 97.58625 * 11 10 9 13 13 C 1.54403 * 109.36877 * 223.39974 * 11 10 9 14 14 N 1.48734 * 104.34910 * 136.79503 * 13 11 10 15 15 C 1.46902 * 111.00050 * 199.05918 * 14 13 11 16 16 C 1.50699 * 109.47055 * 169.99871 * 15 14 13 17 17 O 1.21292 * 119.99772 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99760 * 180.02562 * 16 15 14 19 19 C 1.37108 * 119.99599 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99966 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99437 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00358 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99454 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46940 * 90.00169 * 23 21 19 25 25 H 1.48499 * 109.46965 * 209.99600 * 23 21 19 26 26 H 1.48494 * 109.47475 * 329.99995 * 23 21 19 27 27 C 1.49395 * 103.17079 * 317.72813 * 14 13 11 28 28 C 1.54408 * 104.02730 * 42.60021 * 27 14 13 29 29 H 1.09006 * 113.06677 * 96.90700 * 28 27 14 30 30 C 1.48314 * 128.20136 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.47005 * 59.99949 * 1 2 3 32 32 H 1.09004 * 109.47101 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47476 * 300.00734 * 1 2 3 34 34 H 1.09006 * 109.47177 * 60.00436 * 5 3 2 35 35 H 1.08998 * 109.47014 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47804 * 300.00478 * 5 3 2 37 37 H 1.09005 * 109.47089 * 304.99570 * 6 3 2 38 38 H 1.09002 * 109.46787 * 184.99912 * 6 3 2 39 39 H 1.09002 * 110.44957 * 340.66123 * 10 9 7 40 40 H 1.08995 * 110.45562 * 103.21975 * 10 9 7 41 41 H 1.09005 * 110.46012 * 255.50743 * 13 11 10 42 42 H 1.08997 * 110.46203 * 17.95054 * 13 11 10 43 43 H 1.08994 * 109.46933 * 289.99966 * 15 14 13 44 44 H 1.08995 * 109.46846 * 49.99751 * 15 14 13 45 45 H 0.96997 * 120.00215 * 359.97438 * 18 16 15 46 46 H 0.97005 * 120.00040 * 180.02562 * 22 21 19 47 47 H 1.08996 * 111.34797 * 283.62494 * 27 14 13 48 48 H 1.09005 * 109.87756 * 160.85346 * 27 14 13 49 49 H 1.09002 * 110.45737 * 256.77555 * 30 9 7 50 50 H 1.09002 * 110.45868 * 19.20651 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2632 -0.7212 7 6 3.1416 0.9235 -2.1732 8 8 2.0183 0.7387 -2.5913 9 7 4.1953 0.8309 -3.0086 10 6 5.6319 1.0314 -2.6990 11 6 6.1766 1.8365 -3.8941 12 1 6.2237 2.9058 -3.6881 13 6 7.5409 1.2552 -4.3240 14 7 7.4764 1.2234 -5.8096 15 6 8.4791 0.3019 -6.3605 16 6 8.2268 0.1073 -7.8334 17 8 7.3024 0.6795 -8.3712 18 7 9.0278 -0.7034 -8.5529 19 6 8.7986 -0.8801 -9.8931 20 1 7.9760 -0.3699 -10.3721 21 6 9.6241 -1.7163 -10.6346 22 7 10.6241 -2.3382 -10.0515 23 14 9.3114 -1.9575 -12.4604 24 1 10.0682 -0.9383 -13.2311 25 1 9.7578 -3.3152 -12.8639 26 1 7.8600 -1.8108 -12.7378 27 6 6.0941 0.7251 -6.0797 28 6 5.2153 1.4925 -5.0684 29 1 4.7423 2.3759 -5.4977 30 6 4.1923 0.5102 -4.4567 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.8828 1.0775 1.9564 35 1 2.6605 2.7673 1.4424 36 1 1.2568 1.8015 1.9563 37 1 3.9931 0.5050 -0.2617 38 1 3.8427 2.2369 -0.6443 39 1 5.7468 1.5983 -1.7751 40 1 6.1430 0.0716 -2.6241 41 1 8.3526 1.9024 -3.9917 42 1 7.6692 0.2491 -3.9248 43 1 9.4752 0.7194 -6.2145 44 1 8.4092 -0.6585 -5.8499 45 1 9.7668 -1.1613 -8.1227 46 1 11.2006 -2.9217 -10.5693 47 1 6.0196 -0.3492 -5.9109 48 1 5.8041 0.9722 -7.1010 49 1 4.5090 -0.5200 -4.6194 50 1 3.2020 0.6749 -4.8814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754839841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:20 Heat of formation + Delta-G solvation = -96.836581 kcal Electronic energy + Delta-G solvation = -29777.230258 eV Core-core repulsion = 25611.954417 eV Total energy + Delta-G solvation = -4165.275840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.67835 -39.39287 -38.27798 -37.68289 -35.58824 -33.91431 -33.22456 -31.68419 -31.16318 -30.64144 -28.63191 -27.18725 -26.74493 -25.76483 -24.80274 -23.48473 -21.77269 -21.36178 -19.65218 -19.46288 -19.01045 -17.84201 -17.40150 -17.19032 -16.25216 -16.05852 -15.82045 -15.62040 -15.23091 -14.94838 -14.82151 -14.52129 -14.45969 -14.01884 -13.77408 -13.43767 -13.31381 -12.98926 -12.88967 -12.83081 -12.36612 -12.26808 -12.20513 -12.11931 -11.90161 -11.71051 -11.60694 -11.50906 -11.30632 -11.09589 -11.04690 -10.89760 -10.66635 -10.65345 -10.39626 -10.24086 -9.95959 -9.82256 -9.50706 -8.90583 -8.48392 -8.08423 -7.95692 -6.44302 -3.85192 2.50841 2.73224 3.16402 3.25474 3.31123 3.50784 3.86154 4.01681 4.09800 4.22349 4.39595 4.41840 4.54661 4.73481 4.78870 4.90736 4.97374 5.05179 5.07289 5.09461 5.15159 5.17973 5.19299 5.23099 5.26273 5.27984 5.31482 5.45265 5.52914 5.55326 5.57822 5.66863 5.71797 5.75686 5.78753 5.83678 5.92314 5.98553 6.10186 6.22491 6.28234 6.59817 6.95971 7.07251 7.20229 7.40773 7.53036 8.02653 8.03284 8.58474 9.15296 9.50864 10.02272 10.73276 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026168 B = 0.001893 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.749022 B =14787.590336 C =15300.351204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.100 3.900 4 H 0.068 0.932 5 C -0.175 4.175 6 C -0.136 4.136 7 C 0.537 3.463 8 O -0.535 6.535 9 N -0.627 5.627 10 C 0.105 3.895 11 C -0.102 4.102 12 H 0.096 0.904 13 C 0.032 3.968 14 N -0.480 5.480 15 C 0.031 3.969 16 C 0.442 3.558 17 O -0.580 6.580 18 N -0.561 5.561 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.035 3.965 28 C -0.101 4.101 29 H 0.096 0.904 30 C 0.108 3.892 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.042 0.958 48 H 0.118 0.882 49 H 0.074 0.926 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 6.932 23.463 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.232 4.232 6 C -0.176 4.176 7 C 0.327 3.673 8 O -0.412 6.412 9 N -0.362 5.362 10 C -0.019 4.019 11 C -0.122 4.122 12 H 0.114 0.886 13 C -0.097 4.097 14 N -0.204 5.204 15 C -0.100 4.100 16 C 0.227 3.773 17 O -0.465 6.465 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.092 4.092 28 C -0.121 4.121 29 H 0.114 0.886 30 C -0.015 4.015 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.136 0.864 49 H 0.092 0.908 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.584 7.424 22.616 26.473 hybrid contribution 0.389 -1.143 -0.253 1.234 sum -11.194 6.281 22.363 25.785 Atomic orbital electron populations 1.22698 0.80960 1.02506 0.99712 1.87887 1.19864 1.26925 1.94950 1.21792 0.93515 0.85929 0.94657 0.91376 1.22298 1.02665 1.01664 0.96601 1.21828 0.99133 1.04343 0.92255 1.20145 0.83307 0.76541 0.87338 1.90697 1.22628 1.50205 1.77637 1.49210 1.06574 1.69946 1.10459 1.22594 0.80803 1.00037 0.98434 1.22870 0.94807 1.00255 0.94219 0.88572 1.23346 0.96779 0.99581 0.89986 1.65978 1.02706 1.44968 1.06721 1.22099 0.97294 0.95114 0.95525 1.19689 0.85784 0.84076 0.87737 1.90449 1.32688 1.51404 1.71969 1.41856 1.28056 1.40528 1.09321 1.19704 1.13903 1.25593 0.83699 0.87860 1.25267 0.95622 0.96409 1.00614 1.69609 1.17287 1.30129 1.37187 0.85855 0.78914 0.77466 0.82042 1.20371 1.20938 1.19409 1.23640 0.87748 0.95992 1.01837 1.23036 0.95157 0.98690 0.95261 0.88586 1.22623 1.00717 0.98443 0.79677 0.93549 0.89985 0.94642 0.91608 0.91439 0.92128 0.88076 0.87703 0.90225 0.90622 0.89987 0.93583 0.89085 0.93271 0.77455 0.91843 0.93945 0.86406 0.90822 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.82 101.05 1.09 1.43 16 2 O -0.38 -4.20 9.59 -49.52 -0.47 -4.68 16 3 C 0.10 0.87 2.27 -26.73 -0.06 0.81 16 4 H 0.07 0.64 7.59 -51.93 -0.39 0.24 16 5 C -0.17 -1.05 9.53 37.16 0.35 -0.69 16 6 C -0.14 -1.10 4.40 -27.88 -0.12 -1.22 16 7 C 0.54 6.45 7.80 -10.98 -0.09 6.37 16 8 O -0.54 -8.43 15.70 -8.73 -0.14 -8.57 16 9 N -0.63 -6.94 3.31 -169.20 -0.56 -7.50 16 10 C 0.10 0.87 6.46 -2.49 -0.02 0.86 16 11 C -0.10 -1.01 4.11 -87.94 -0.36 -1.37 16 12 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 13 C 0.03 0.36 5.98 -2.07 -0.01 0.34 16 14 N -0.48 -7.57 5.38 -230.49 -1.24 -8.81 16 15 C 0.03 0.54 5.56 -4.98 -0.03 0.51 16 16 C 0.44 10.12 7.50 -10.99 -0.08 10.04 16 17 O -0.58 -15.06 13.29 5.55 0.07 -14.99 16 18 N -0.56 -13.96 5.29 -10.96 -0.06 -14.02 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 23 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.04 0.56 4.92 -1.70 -0.01 0.55 16 28 C -0.10 -1.25 4.16 -87.73 -0.36 -1.62 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 30 C 0.11 1.32 6.59 -2.28 -0.02 1.30 16 31 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.03 0.24 7.87 -51.93 -0.41 -0.17 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.57 7.98 -51.93 -0.41 0.16 16 39 H 0.08 0.46 7.31 -51.93 -0.38 0.08 16 40 H 0.08 0.61 7.21 -51.93 -0.37 0.24 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.48 6.94 -51.93 -0.36 0.12 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.05 0.77 7.90 -51.93 -0.41 0.36 16 45 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.04 0.67 7.08 -51.93 -0.37 0.30 16 48 H 0.12 2.29 5.97 -51.93 -0.31 1.98 16 49 H 0.07 0.92 7.17 -51.93 -0.37 0.54 16 50 H 0.08 1.10 7.87 -51.93 -0.41 0.70 16 LS Contribution 397.12 15.07 5.98 5.98 Total: -1.00 -33.42 397.12 -8.91 -42.32 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.24 Total: 8.45 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 0.05 Total: 9.44 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -1.13 Total: -53.85 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.54 Total: -28.23 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.42 -8.91 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754839841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.514 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds