Wall clock time and date at job start Sat Apr 11 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00343 * 2 1 4 4 H 1.08998 * 109.46420 * 329.99552 * 3 2 1 5 5 C 1.52995 * 109.47084 * 89.99401 * 3 2 1 6 6 C 1.53002 * 109.47122 * 209.99945 * 3 2 1 7 7 C 1.50695 * 109.47004 * 64.99822 * 6 3 2 8 8 O 1.21274 * 120.00413 * 0.27039 * 7 6 3 9 9 N 1.34784 * 119.99635 * 179.97438 * 7 6 3 10 10 C 1.48318 * 128.20516 * 359.67811 * 9 7 6 11 11 C 1.54053 * 104.54517 * 221.91266 * 10 9 7 12 12 H 1.08995 * 112.42147 * 97.58625 * 11 10 9 13 13 C 1.54403 * 109.36877 * 223.39974 * 11 10 9 14 14 N 1.48734 * 104.34910 * 136.79503 * 13 11 10 15 15 C 1.46902 * 111.00050 * 199.05918 * 14 13 11 16 16 C 1.50699 * 109.47055 * 169.99871 * 15 14 13 17 17 O 1.21292 * 119.99772 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99760 * 180.02562 * 16 15 14 19 19 C 1.37108 * 119.99599 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99966 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99437 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00358 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99454 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46940 * 90.00169 * 23 21 19 25 25 H 1.48499 * 109.46965 * 209.99600 * 23 21 19 26 26 H 1.48494 * 109.47475 * 329.99995 * 23 21 19 27 27 C 1.49395 * 103.17079 * 317.72813 * 14 13 11 28 28 C 1.54408 * 104.02730 * 42.60021 * 27 14 13 29 29 H 1.09006 * 113.06677 * 96.90700 * 28 27 14 30 30 C 1.48314 * 128.20136 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.47005 * 59.99949 * 1 2 3 32 32 H 1.09004 * 109.47101 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47476 * 300.00734 * 1 2 3 34 34 H 1.09006 * 109.47177 * 60.00436 * 5 3 2 35 35 H 1.08998 * 109.47014 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47804 * 300.00478 * 5 3 2 37 37 H 1.09005 * 109.47089 * 304.99570 * 6 3 2 38 38 H 1.09002 * 109.46787 * 184.99912 * 6 3 2 39 39 H 1.09002 * 110.44957 * 340.66123 * 10 9 7 40 40 H 1.08995 * 110.45562 * 103.21975 * 10 9 7 41 41 H 1.09005 * 110.46012 * 255.50743 * 13 11 10 42 42 H 1.08997 * 110.46203 * 17.95054 * 13 11 10 43 43 H 1.08994 * 109.46933 * 289.99966 * 15 14 13 44 44 H 1.08995 * 109.46846 * 49.99751 * 15 14 13 45 45 H 0.96997 * 120.00215 * 359.97438 * 18 16 15 46 46 H 0.97005 * 120.00040 * 180.02562 * 22 21 19 47 47 H 1.08996 * 111.34797 * 283.62494 * 27 14 13 48 48 H 1.09005 * 109.87756 * 160.85346 * 27 14 13 49 49 H 1.09002 * 110.45737 * 256.77555 * 30 9 7 50 50 H 1.09002 * 110.45868 * 19.20651 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2632 -0.7212 7 6 3.1416 0.9235 -2.1732 8 8 2.0183 0.7387 -2.5913 9 7 4.1953 0.8309 -3.0086 10 6 5.6319 1.0314 -2.6990 11 6 6.1766 1.8365 -3.8941 12 1 6.2237 2.9058 -3.6881 13 6 7.5409 1.2552 -4.3240 14 7 7.4764 1.2234 -5.8096 15 6 8.4791 0.3019 -6.3605 16 6 8.2268 0.1073 -7.8334 17 8 7.3024 0.6795 -8.3712 18 7 9.0278 -0.7034 -8.5529 19 6 8.7986 -0.8801 -9.8931 20 1 7.9760 -0.3699 -10.3721 21 6 9.6241 -1.7163 -10.6346 22 7 10.6241 -2.3382 -10.0515 23 14 9.3114 -1.9575 -12.4604 24 1 10.0682 -0.9383 -13.2311 25 1 9.7578 -3.3152 -12.8639 26 1 7.8600 -1.8108 -12.7378 27 6 6.0941 0.7251 -6.0797 28 6 5.2153 1.4925 -5.0684 29 1 4.7423 2.3759 -5.4977 30 6 4.1923 0.5102 -4.4567 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.8828 1.0775 1.9564 35 1 2.6605 2.7673 1.4424 36 1 1.2568 1.8015 1.9563 37 1 3.9931 0.5050 -0.2617 38 1 3.8427 2.2369 -0.6443 39 1 5.7468 1.5983 -1.7751 40 1 6.1430 0.0716 -2.6241 41 1 8.3526 1.9024 -3.9917 42 1 7.6692 0.2491 -3.9248 43 1 9.4752 0.7194 -6.2145 44 1 8.4092 -0.6585 -5.8499 45 1 9.7668 -1.1613 -8.1227 46 1 11.2006 -2.9217 -10.5693 47 1 6.0196 -0.3492 -5.9109 48 1 5.8041 0.9722 -7.1010 49 1 4.5090 -0.5200 -4.6194 50 1 3.2020 0.6749 -4.8814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754839841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:18 Heat of formation + Delta-G solvation = -121.818041 kcal Electronic energy + Delta-G solvation = -29778.313535 eV Core-core repulsion = 25611.954417 eV Total energy + Delta-G solvation = -4166.359118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.64328 -40.50565 -39.68404 -38.64957 -36.77826 -35.84080 -33.91823 -33.33725 -32.58045 -31.57078 -29.44635 -28.39512 -27.50166 -26.73886 -26.42316 -24.61538 -22.54285 -22.39067 -21.06948 -20.53856 -20.18211 -19.75479 -18.25636 -17.87297 -17.66566 -17.05305 -16.88636 -16.76133 -16.44100 -16.07073 -16.03803 -15.88284 -15.63665 -15.34875 -15.07487 -14.60846 -14.32105 -14.01958 -13.86017 -13.56130 -13.43369 -13.39973 -13.09967 -13.04141 -13.00250 -12.94715 -12.83523 -12.61459 -12.43114 -12.39079 -12.30875 -12.14745 -11.88788 -11.80822 -11.64326 -11.61818 -11.44069 -10.87563 -10.52861 -10.20396 -10.00720 -9.80689 -9.38375 -8.47144 -5.95394 1.37027 1.41031 1.53322 1.63851 1.89727 2.04802 2.28312 2.87684 2.89647 3.18689 3.22393 3.44927 3.50596 3.73681 3.83380 3.89661 4.07516 4.20220 4.23153 4.29350 4.31603 4.34000 4.38507 4.46412 4.48201 4.53227 4.57523 4.58669 4.62209 4.70059 4.73366 4.77518 4.81462 4.83125 4.90164 4.91182 5.02851 5.08566 5.14165 5.30049 5.33089 5.35760 5.41382 5.83039 5.91545 6.11257 6.30300 6.57516 6.60638 7.13026 7.14770 7.56086 8.12274 8.70178 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026168 B = 0.001893 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.749022 B =14787.590336 C =15300.351204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.404 6.404 3 C 0.091 3.909 4 H 0.054 0.946 5 C -0.166 4.166 6 C -0.128 4.128 7 C 0.528 3.472 8 O -0.584 6.584 9 N -0.627 5.627 10 C 0.107 3.893 11 C -0.091 4.091 12 H 0.114 0.886 13 C 0.034 3.966 14 N -0.501 5.501 15 C 0.044 3.956 16 C 0.438 3.562 17 O -0.616 6.616 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.275 1.275 27 C 0.040 3.960 28 C -0.095 4.095 29 H 0.088 0.912 30 C 0.110 3.890 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.118 0.882 38 H 0.141 0.859 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.036 0.964 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.155 7.620 26.358 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.324 6.324 3 C 0.033 3.967 4 H 0.072 0.928 5 C -0.224 4.224 6 C -0.167 4.167 7 C 0.319 3.681 8 O -0.464 6.464 9 N -0.361 5.361 10 C -0.014 4.014 11 C -0.111 4.111 12 H 0.132 0.868 13 C -0.094 4.094 14 N -0.225 5.225 15 C -0.087 4.087 16 C 0.225 3.775 17 O -0.502 6.502 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.088 4.088 28 C -0.115 4.115 29 H 0.106 0.894 30 C -0.014 4.014 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.088 0.912 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.054 0.946 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.075 8.119 25.549 28.638 hybrid contribution -0.115 -1.323 -1.158 1.762 sum -10.190 6.796 24.391 27.293 Atomic orbital electron populations 1.22742 0.80402 1.02929 0.99880 1.87835 1.20711 1.28638 1.95177 1.22004 0.93507 0.84763 0.96410 0.92829 1.22236 1.02997 1.02751 0.94384 1.21932 0.99295 1.06638 0.88820 1.20993 0.82635 0.75536 0.88891 1.90679 1.24652 1.52356 1.78734 1.49304 1.07944 1.69301 1.09505 1.22783 0.78600 1.00874 0.99191 1.22895 0.93172 1.01589 0.93408 0.86804 1.23483 0.98183 1.01156 0.86536 1.65953 1.01845 1.44492 1.10183 1.21983 0.98789 0.96888 0.91065 1.20806 0.84290 0.82232 0.90139 1.90452 1.33906 1.52271 1.73573 1.41927 1.28788 1.41522 1.08799 1.19640 1.14220 1.26923 0.85373 0.90396 1.26006 0.95141 0.95638 1.04453 1.69664 1.17565 1.30212 1.38586 0.84955 0.78411 0.77972 0.77166 1.19627 1.19555 1.19949 1.23391 0.89035 0.96062 1.00314 1.22861 0.95223 0.97859 0.95563 0.89406 1.22438 0.99533 0.98193 0.81186 0.95218 0.89544 0.92570 0.91181 0.89348 0.92164 0.86412 0.84156 0.86228 0.89733 0.87720 0.92056 0.86849 0.91174 0.76987 0.91318 0.94558 0.91082 0.91283 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.82 113.37 1.23 1.88 16 2 O -0.40 -8.72 9.59 -135.31 -1.30 -10.02 16 3 C 0.09 1.43 2.27 30.59 0.07 1.50 16 4 H 0.05 0.97 7.59 -2.39 -0.02 0.95 16 5 C -0.17 -1.50 9.53 71.98 0.69 -0.81 16 6 C -0.13 -1.66 4.40 29.85 0.13 -1.53 16 7 C 0.53 12.00 7.80 87.65 0.68 12.69 16 8 O -0.58 -18.83 15.70 10.66 0.17 -18.67 16 9 N -0.63 -12.74 3.31 -807.60 -2.68 -15.41 16 10 C 0.11 1.35 6.46 86.39 0.56 1.90 16 11 C -0.09 -1.51 4.11 -9.06 -0.04 -1.54 16 12 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 13 C 0.03 0.64 5.98 86.42 0.52 1.15 16 14 N -0.50 -15.14 5.38 -883.12 -4.75 -19.89 16 15 C 0.04 1.46 5.56 85.56 0.48 1.94 16 16 C 0.44 20.51 7.50 87.66 0.66 21.17 16 17 O -0.62 -33.45 13.29 -3.07 -0.04 -33.49 16 18 N -0.57 -29.16 5.29 -306.98 -1.62 -30.78 16 19 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 23 Si 0.99 43.11 29.55 68.60 2.03 45.13 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 C 0.04 1.29 4.92 86.30 0.42 1.72 16 28 C -0.09 -2.32 4.16 -8.92 -0.04 -2.36 16 29 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 30 C 0.11 2.72 6.59 86.52 0.57 3.29 16 31 H 0.03 0.60 8.08 -2.39 -0.02 0.58 16 32 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.06 0.73 7.87 -2.39 -0.02 0.71 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.06 0.55 7.87 -2.39 -0.02 0.53 16 37 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.14 0.81 7.98 -2.39 -0.02 0.80 16 39 H 0.12 0.63 7.31 -2.39 -0.02 0.61 16 40 H 0.08 0.98 7.21 -2.39 -0.02 0.97 16 41 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.06 1.01 6.94 -2.39 -0.02 0.99 16 43 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.07 2.04 7.90 -2.39 -0.02 2.03 16 45 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 46 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 47 H 0.04 1.18 7.08 -2.39 -0.02 1.17 16 48 H 0.07 2.97 5.97 -2.38 -0.01 2.96 16 49 H 0.07 1.76 7.17 -2.39 -0.02 1.74 16 50 H 0.06 1.79 7.87 -2.39 -0.02 1.77 16 Total: -1.00 -77.30 397.12 -0.49 -77.80 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.21 Total: 31.66 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 7.21 Total: 22.80 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -8.77 Total: -115.21 kcal Atomic # 8 Polarization: -61.00 SS G_CDS: -1.17 Total: -62.17 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -77.30 -0.49 -77.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754839841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.022 kcal (2) G-P(sol) polarization free energy of solvation -77.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds