Wall clock time and date at job start Sat Apr 11 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99812 * 2 1 4 4 H 1.08998 * 109.47309 * 29.99686 * 3 2 1 5 5 C 1.53003 * 109.47244 * 269.99631 * 3 2 1 6 6 C 1.53005 * 109.47349 * 149.99702 * 3 2 1 7 7 C 1.50704 * 109.47048 * 294.99959 * 6 3 2 8 8 O 1.21282 * 119.99773 * 359.97438 * 7 6 3 9 9 N 1.34769 * 120.00212 * 179.97438 * 7 6 3 10 10 C 1.46494 * 125.29070 * 179.97438 * 9 7 6 11 11 C 1.53804 * 108.30632 * 178.09408 * 10 9 7 12 12 H 1.08996 * 112.68539 * 109.41516 * 11 10 9 13 13 C 1.54191 * 108.41640 * 234.83466 * 11 10 9 14 14 N 1.47829 * 107.26603 * 111.90019 * 13 11 10 15 15 C 1.46894 * 111.00137 * 214.65410 * 14 13 11 16 16 C 1.50703 * 109.47518 * 287.46349 * 15 14 13 17 17 O 1.21292 * 119.99359 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00022 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99747 * 179.97438 * 18 16 15 20 20 H 1.08007 * 120.00139 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00060 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00289 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99969 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46815 * 59.99876 * 23 21 19 25 25 H 1.48500 * 109.47005 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47170 * 299.99661 * 23 21 19 27 27 C 1.48568 * 105.87431 * 335.20194 * 14 13 11 28 28 C 1.54569 * 103.28945 * 39.35788 * 27 14 13 29 29 H 1.09003 * 112.83541 * 83.99238 * 28 27 14 30 30 C 1.46646 * 125.28734 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.46943 * 60.00549 * 1 2 3 32 32 H 1.09007 * 109.46646 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47462 * 300.00227 * 1 2 3 34 34 H 1.08994 * 109.46891 * 59.99533 * 5 3 2 35 35 H 1.08997 * 109.47274 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.47012 * 300.00236 * 5 3 2 37 37 H 1.08999 * 109.47415 * 175.00016 * 6 3 2 38 38 H 1.08994 * 109.46731 * 54.99649 * 6 3 2 39 39 H 1.09001 * 109.70732 * 58.35648 * 10 9 7 40 40 H 1.09003 * 109.70975 * 297.82799 * 10 9 7 41 41 H 1.09007 * 109.88082 * 352.48515 * 13 11 10 42 42 H 1.09000 * 110.01137 * 231.39205 * 13 11 10 43 43 H 1.09000 * 109.47220 * 47.46271 * 15 14 13 44 44 H 1.09003 * 109.47683 * 167.46126 * 15 14 13 45 45 H 0.96997 * 120.00262 * 359.97438 * 18 16 15 46 46 H 0.96997 * 120.00663 * 180.02562 * 22 21 19 47 47 H 1.09002 * 110.68652 * 157.85904 * 27 14 13 48 48 H 1.08999 * 110.68534 * 280.86421 * 27 14 13 49 49 H 1.09005 * 109.91091 * 316.85142 * 30 9 7 50 50 H 1.08995 * 109.91780 * 77.94279 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3589 1.2634 0.7213 7 6 3.1415 0.9238 2.1734 8 8 2.0184 0.7345 2.5904 9 7 4.1950 0.8303 3.0087 10 6 4.1178 0.5089 4.4358 11 6 5.5485 0.4583 4.9978 12 1 5.7700 1.2955 5.6597 13 6 5.7562 -0.9092 5.6792 14 7 6.7353 -1.6607 4.8655 15 6 6.4288 -3.0973 4.8671 16 6 6.7695 -3.6823 6.2134 17 8 7.2236 -2.9723 7.0857 18 7 6.5707 -4.9945 6.4479 19 6 6.8812 -5.5268 7.6726 20 1 7.2856 -4.8946 8.4494 21 6 6.6768 -6.8798 7.9141 22 7 6.1854 -7.6491 6.9689 23 14 7.1006 -7.6051 9.5827 24 1 6.3003 -6.9279 10.6344 25 1 6.7911 -9.0575 9.5841 26 1 8.5466 -7.4065 9.8560 27 6 6.6411 -1.0976 3.4939 28 6 6.4691 0.4181 3.7431 29 1 7.4182 0.9323 3.8945 30 6 5.5970 1.0346 2.6301 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.2570 1.8013 -1.9564 35 1 2.6614 2.7669 -1.4425 36 1 2.8830 1.0775 -1.9563 37 1 3.8426 2.2371 0.6444 38 1 3.9930 0.5053 0.2619 39 1 3.6359 -0.4598 4.5688 40 1 3.5456 1.2776 4.9553 41 1 4.8115 -1.4517 5.7171 42 1 6.1433 -0.7682 6.6883 43 1 5.3674 -3.2426 4.6659 44 1 7.0162 -3.5951 4.0955 45 1 6.2080 -5.5623 5.7501 46 1 6.0423 -8.5935 7.1376 47 1 7.5550 -1.2945 2.9333 48 1 5.7751 -1.5024 2.9702 49 1 5.8004 0.5415 1.6794 50 1 5.8077 2.1008 2.5477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754839842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:23 Heat of formation + Delta-G solvation = -129.805659 kcal Electronic energy + Delta-G solvation = -30107.869401 eV Core-core repulsion = 25941.163914 eV Total energy + Delta-G solvation = -4166.705487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.80700 -40.48401 -39.72102 -38.68190 -36.79001 -35.86274 -33.94241 -33.33786 -32.71990 -31.74181 -29.45606 -28.53847 -27.55287 -27.04288 -26.46284 -24.42093 -22.44997 -22.29892 -21.17995 -20.87499 -20.25885 -19.81774 -18.27218 -17.93939 -17.77007 -17.17865 -16.80321 -16.60119 -16.43583 -16.32036 -16.01791 -15.76105 -15.44400 -15.39096 -15.13792 -14.59742 -14.31070 -14.09868 -13.75868 -13.72235 -13.55051 -13.45647 -13.33342 -13.18623 -13.01868 -12.93889 -12.90012 -12.73231 -12.44775 -12.37130 -12.34427 -12.13420 -12.00306 -11.82876 -11.72175 -11.61818 -11.49435 -10.90730 -10.53237 -10.35458 -10.02858 -9.69517 -9.31216 -8.47523 -5.96703 1.38645 1.39902 1.51367 1.63368 1.96818 2.03594 2.27281 2.77010 2.88779 3.15956 3.20762 3.39627 3.49078 3.54486 3.77596 3.84991 4.09441 4.14133 4.19769 4.22831 4.24718 4.35333 4.37225 4.44804 4.46153 4.50370 4.55499 4.55922 4.62272 4.67160 4.69793 4.73803 4.81525 4.85706 4.87413 4.90110 5.02245 5.06090 5.14133 5.18532 5.33129 5.37500 5.39052 5.81556 5.93110 6.06466 6.30482 6.51223 6.58858 7.11245 7.15614 7.54408 8.10111 8.69875 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.002220 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.284519 B =12609.160118 C =13577.349078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.406 6.406 3 C 0.090 3.910 4 H 0.055 0.945 5 C -0.166 4.166 6 C -0.127 4.127 7 C 0.520 3.480 8 O -0.584 6.584 9 N -0.616 5.616 10 C 0.115 3.885 11 C -0.095 4.095 12 H 0.120 0.880 13 C 0.051 3.949 14 N -0.508 5.508 15 C 0.050 3.950 16 C 0.442 3.558 17 O -0.614 6.614 18 N -0.577 5.577 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.037 3.963 28 C -0.083 4.083 29 H 0.136 0.864 30 C 0.107 3.893 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.111 0.889 45 H 0.395 0.605 46 H 0.278 0.722 47 H 0.104 0.896 48 H 0.041 0.959 49 H 0.100 0.900 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 21.717 -19.789 29.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.325 6.325 3 C 0.032 3.968 4 H 0.073 0.927 5 C -0.224 4.224 6 C -0.167 4.167 7 C 0.311 3.689 8 O -0.464 6.464 9 N -0.350 5.350 10 C -0.009 4.009 11 C -0.115 4.115 12 H 0.138 0.862 13 C -0.077 4.077 14 N -0.232 5.232 15 C -0.081 4.081 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.214 5.214 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.195 1.195 27 C -0.090 4.090 28 C -0.103 4.103 29 H 0.154 0.846 30 C -0.015 4.015 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.161 0.839 38 H 0.134 0.866 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.129 0.871 45 H 0.228 0.772 46 H 0.087 0.913 47 H 0.122 0.878 48 H 0.059 0.941 49 H 0.118 0.882 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.215 21.754 -18.841 29.086 hybrid contribution -1.406 -1.330 0.741 2.073 sum -5.622 20.424 -18.100 27.863 Atomic orbital electron populations 1.22734 0.80434 1.02826 0.99919 1.87848 1.20695 1.28790 1.95178 1.22023 0.93589 0.84702 0.96445 0.92699 1.22238 1.02952 1.02789 0.94397 1.21944 0.99187 1.06687 0.88833 1.21026 0.82875 0.75993 0.89017 1.90687 1.24883 1.51990 1.78802 1.48333 1.08047 1.69558 1.09047 1.21845 0.97120 0.99776 0.82143 1.22904 0.93183 0.97483 0.97926 0.86153 1.22921 0.92974 0.93469 0.98318 1.64430 1.48014 1.00754 1.09995 1.21902 1.00266 0.90830 0.95144 1.20725 0.83220 0.82336 0.90796 1.90472 1.50471 1.60524 1.48453 1.41950 1.57436 1.07882 1.14152 1.19629 1.41659 0.93317 0.91603 0.90237 1.26079 0.96525 0.95889 1.02988 1.69670 1.44845 1.07029 1.34799 0.84970 0.78866 0.77229 0.77160 1.19770 1.19474 1.19484 1.23430 1.01862 0.94381 0.89291 1.23059 0.99510 0.94990 0.92704 0.84624 1.22226 0.77960 1.02741 0.98526 0.92483 0.89822 0.95120 0.92224 0.89172 0.91320 0.83902 0.86607 0.94411 0.91638 0.95698 0.91977 0.92580 0.87070 0.77186 0.91303 0.87799 0.94066 0.88152 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.82 113.37 1.23 1.94 16 2 O -0.41 -9.26 9.58 -135.21 -1.30 -10.56 16 3 C 0.09 1.45 2.27 30.60 0.07 1.52 16 4 H 0.05 0.99 7.60 -2.39 -0.02 0.97 16 5 C -0.17 -1.56 9.53 71.98 0.69 -0.87 16 6 C -0.13 -1.65 4.45 29.85 0.13 -1.52 16 7 C 0.52 11.69 7.71 87.66 0.68 12.37 16 8 O -0.58 -18.90 15.72 10.74 0.17 -18.73 16 9 N -0.62 -11.95 3.31 -817.43 -2.70 -14.65 16 10 C 0.11 2.71 6.35 86.65 0.55 3.26 16 11 C -0.10 -2.03 4.06 -9.20 -0.04 -2.07 16 12 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 13 C 0.05 1.64 5.45 86.53 0.47 2.11 16 14 N -0.51 -16.34 4.90 -888.02 -4.35 -20.69 16 15 C 0.05 1.84 5.27 85.56 0.45 2.29 16 16 C 0.44 21.87 7.61 87.66 0.67 22.53 16 17 O -0.61 -34.72 14.87 -3.07 -0.05 -34.76 16 18 N -0.58 -30.75 5.29 -306.98 -1.62 -32.37 16 19 C -0.33 -19.38 9.68 84.04 0.81 -18.57 16 20 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 21 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 22 N -0.92 -51.17 13.05 21.66 0.28 -50.88 16 23 Si 0.99 43.89 29.55 68.60 2.03 45.92 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 C 0.04 0.80 5.79 86.51 0.50 1.30 16 28 C -0.08 -1.29 4.16 -8.91 -0.04 -1.33 16 29 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 30 C 0.11 1.17 5.87 86.78 0.51 1.68 16 31 H 0.06 0.79 7.87 -2.39 -0.02 0.78 16 32 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.03 0.65 8.08 -2.39 -0.02 0.63 16 34 H 0.06 0.57 7.87 -2.39 -0.02 0.56 16 35 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.12 1.24 7.88 -2.39 -0.02 1.22 16 39 H 0.04 1.13 6.95 -2.39 -0.02 1.11 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.02 0.87 6.34 -2.38 -0.02 0.86 16 42 H 0.06 2.35 7.53 -2.39 -0.02 2.33 16 43 H 0.06 1.98 7.73 -2.39 -0.02 1.96 16 44 H 0.11 3.55 8.08 -2.39 -0.02 3.53 16 45 H 0.39 20.13 7.90 -92.71 -0.73 19.40 16 46 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 47 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.04 0.92 7.80 -2.39 -0.02 0.91 16 49 H 0.10 0.72 7.47 -2.38 -0.02 0.70 16 50 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -80.65 399.96 -0.19 -80.84 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.20 Total: 31.63 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 7.15 Total: 24.26 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -8.40 Total: -118.59 kcal Atomic # 8 Polarization: -62.88 SS G_CDS: -1.17 Total: -64.05 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -80.65 -0.19 -80.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754839842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.962 kcal (2) G-P(sol) polarization free energy of solvation -80.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds