Wall clock time and date at job start Sat Apr 11 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99926 * 2 1 4 4 H 1.08998 * 109.47129 * 28.12342 * 3 2 1 5 5 C 1.50696 * 109.47198 * 268.12270 * 3 2 1 6 6 O 1.21283 * 119.99995 * 0.02562 * 5 3 2 7 7 N 1.34776 * 120.00148 * 179.97438 * 5 3 2 8 8 C 1.46505 * 119.99969 * 180.02562 * 7 5 3 9 9 H 1.08999 * 109.46668 * 325.00056 * 8 7 5 10 10 C 1.53000 * 109.47281 * 85.00100 * 8 7 5 11 11 C 1.52999 * 109.47208 * 204.99980 * 8 7 5 12 12 C 1.53936 * 113.73702 * 161.84665 * 11 8 7 13 13 N 1.47958 * 86.18139 * 221.92449 * 12 11 8 14 14 C 1.46897 * 111.00290 * 137.58575 * 13 12 11 15 15 C 1.50691 * 109.47234 * 90.63382 * 14 13 12 16 16 O 1.21295 * 120.00488 * 0.02562 * 15 14 13 17 17 N 1.34785 * 119.99974 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99902 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00458 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00029 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99478 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00126 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46938 * 119.99757 * 22 20 18 25 25 H 1.48503 * 109.46901 * 239.99664 * 22 20 18 26 26 C 1.47965 * 90.76694 * 24.68704 * 13 12 11 27 27 C 1.53003 * 109.47429 * 148.12436 * 3 2 1 28 28 C 1.53003 * 117.49290 * 4.71297 * 27 3 2 29 29 C 1.53000 * 117.49922 * 296.05808 * 27 3 2 30 30 H 1.08996 * 109.47112 * 55.36361 * 1 2 3 31 31 H 1.09003 * 109.47070 * 295.36708 * 1 2 3 32 32 H 1.09000 * 109.47006 * 175.36619 * 1 2 3 33 33 H 0.96997 * 120.00508 * 0.02562 * 7 5 3 34 34 H 1.08998 * 109.47037 * 183.98797 * 10 8 7 35 35 H 1.09003 * 109.46717 * 303.98311 * 10 8 7 36 36 H 1.08993 * 109.47497 * 63.98352 * 10 8 7 37 37 H 1.09001 * 112.93812 * 293.56056 * 11 8 7 38 38 H 1.08997 * 113.75572 * 336.23882 * 12 11 8 39 39 H 1.09002 * 113.75789 * 107.60390 * 12 11 8 40 40 H 1.09001 * 109.47018 * 210.63945 * 14 13 12 41 41 H 1.09002 * 109.46870 * 330.63420 * 14 13 12 42 42 H 0.96996 * 119.99688 * 359.97438 * 17 15 14 43 43 H 0.97005 * 120.00126 * 180.02562 * 21 20 18 44 44 H 1.08993 * 113.76231 * 220.99535 * 26 13 12 45 45 H 1.08997 * 113.85471 * 89.63966 * 26 13 12 46 46 H 1.08993 * 115.55342 * 150.38046 * 27 3 2 47 47 H 1.08998 * 117.50377 * 359.97438 * 28 27 3 48 48 H 1.09010 * 117.49509 * 145.02146 * 28 27 3 49 49 H 1.08997 * 117.49924 * 214.98049 * 29 27 3 50 50 H 1.09006 * 117.49851 * 359.96905 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3300 2.0060 0.4844 5 6 2.2571 1.7455 -1.4200 6 8 1.9637 1.0134 -2.3414 7 7 2.8029 2.9529 -1.6662 8 6 3.0423 3.3808 -3.0467 9 1 3.3257 2.5186 -3.6503 10 6 1.7665 4.0047 -3.6159 11 6 4.1704 4.4141 -3.0720 12 6 4.8044 4.6054 -4.4616 13 7 6.1043 4.6337 -3.7555 14 6 7.1151 3.8537 -4.4819 15 6 7.8427 4.7514 -5.4492 16 8 7.5485 5.9256 -5.5257 17 7 8.8204 4.2494 -6.2295 18 6 9.4827 5.0663 -7.1091 19 1 9.2208 6.1118 -7.1772 20 6 10.4903 4.5487 -7.9139 21 7 10.8086 3.2765 -7.8315 22 14 11.3922 5.6615 -9.1130 23 1 10.8488 7.0399 -9.0137 24 1 12.8400 5.6747 -8.7828 25 1 11.2044 5.1543 -10.4960 26 6 5.5354 3.8520 -2.6354 27 6 3.3368 1.2732 0.7618 28 6 3.8341 -0.0864 1.2568 29 6 3.2867 0.9381 2.2538 30 1 -0.3633 0.5841 -0.8455 31 1 -0.3633 0.4403 0.9286 32 1 -0.3633 -1.0243 -0.0830 33 1 3.0372 3.5386 -0.9294 34 1 1.9226 4.2585 -4.6643 35 1 0.9455 3.2925 -3.5328 36 1 1.5224 4.9074 -3.0560 37 1 3.9023 5.3480 -2.5779 38 1 4.6820 3.7470 -5.1221 39 1 4.5425 5.5505 -4.9375 40 1 7.8268 3.4311 -3.7726 41 1 6.6272 3.0481 -5.0306 42 1 9.0559 3.3105 -6.1681 43 1 11.5123 2.9151 -8.3930 44 1 5.8574 4.1950 -1.6523 45 1 5.6261 2.7730 -2.7601 46 1 4.0855 1.9936 0.4326 47 1 3.2161 -0.9577 1.0403 48 1 4.9102 -0.2602 1.2538 49 1 4.0027 1.4379 2.9061 50 1 2.3086 0.7411 2.6928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755373556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:38 Heat of formation + Delta-G solvation = -53.018145 kcal Electronic energy + Delta-G solvation = -29651.574466 eV Core-core repulsion = 25488.198736 eV Total energy + Delta-G solvation = -4163.375730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.78271 -39.93348 -38.28261 -37.67145 -36.53726 -35.32694 -33.85061 -31.89617 -31.18747 -29.67307 -28.79286 -26.61144 -25.94040 -25.75592 -24.12347 -22.72149 -22.29539 -21.43638 -20.55579 -19.72260 -19.19623 -18.02266 -17.74121 -17.13931 -16.69531 -16.16342 -15.87403 -15.50695 -15.44767 -15.12352 -14.76788 -14.63212 -14.52019 -14.12417 -13.80333 -13.71482 -13.56240 -13.34197 -12.96334 -12.67268 -12.55519 -12.30823 -12.06119 -11.97681 -11.83924 -11.73067 -11.55320 -11.30026 -11.09238 -11.07431 -10.90762 -10.81762 -10.78306 -10.57733 -10.56198 -10.32185 -10.18879 -9.50533 -9.48039 -9.33810 -8.69731 -8.14229 -7.92755 -6.38577 -3.79206 2.28912 2.70070 3.18220 3.28285 3.28350 3.35761 3.49672 3.90599 3.96010 4.13669 4.23562 4.31084 4.41620 4.45884 4.54495 4.69312 4.75748 4.89095 4.97359 4.99784 5.04552 5.08479 5.13754 5.21369 5.26772 5.30685 5.32472 5.41999 5.46070 5.51534 5.52247 5.67228 5.69776 5.71145 5.73445 5.77725 5.90808 5.93770 5.99319 6.19480 6.28248 6.30967 6.57863 6.60318 7.18646 7.23707 7.58240 7.96917 8.09657 8.65687 9.21815 9.58423 10.10851 10.79444 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.001979 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.148213 B =14148.723130 C =14684.578335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.105 3.895 4 H 0.090 0.910 5 C 0.496 3.504 6 O -0.524 6.524 7 N -0.720 5.720 8 C 0.150 3.850 9 H 0.088 0.912 10 C -0.161 4.161 11 C -0.126 4.126 12 C 0.023 3.977 13 N -0.448 5.448 14 C 0.010 3.990 15 C 0.447 3.553 16 O -0.576 6.576 17 N -0.568 5.568 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.020 3.980 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.005 3.995 27 C -0.165 4.165 28 C -0.157 4.157 29 C -0.170 4.170 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.400 0.600 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.391 0.609 43 H 0.270 0.730 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.121 0.879 47 H 0.108 0.892 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.110 -5.886 20.153 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.043 3.957 4 H 0.107 0.893 5 C 0.281 3.719 6 O -0.399 6.399 7 N -0.374 5.374 8 C 0.045 3.955 9 H 0.107 0.893 10 C -0.219 4.219 11 C -0.145 4.145 12 C -0.106 4.106 13 N -0.170 5.170 14 C -0.122 4.122 15 C 0.232 3.768 16 O -0.459 6.459 17 N -0.205 5.205 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.181 4.181 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.124 4.124 27 C -0.184 4.184 28 C -0.194 4.194 29 C -0.207 4.207 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.139 0.861 47 H 0.126 0.874 48 H 0.114 0.886 49 H 0.117 0.883 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.928 -5.300 19.426 28.330 hybrid contribution 0.370 -0.432 -0.559 0.798 sum -19.557 -5.732 18.867 27.772 Atomic orbital electron populations 1.22867 0.80538 1.03420 0.99891 1.87995 1.20039 1.24783 1.94335 1.21424 0.95450 0.86934 0.91900 0.89260 1.21200 0.77529 0.81335 0.91865 1.90728 1.50123 1.53158 1.45846 1.46086 1.64076 1.18157 1.09072 1.21064 0.94717 0.97179 0.82521 0.89348 1.22131 0.97337 1.00749 1.01677 1.23347 0.93123 0.98946 0.99101 1.23915 0.89635 1.02753 0.94343 1.68376 1.04149 1.39188 1.05278 1.22481 0.96715 0.95420 0.97617 1.19692 0.83773 0.88859 0.84472 1.90517 1.67886 1.16950 1.70553 1.41892 1.31742 1.12049 1.34844 1.19742 1.13995 0.94559 1.14341 0.87919 1.25261 0.97696 0.96359 0.98788 1.69623 1.31678 1.12372 1.40788 0.85805 0.78915 0.80074 0.79576 1.19238 1.20777 1.20797 1.23972 0.93333 0.97328 0.97805 1.22316 0.96965 1.02521 0.96595 1.22911 1.01343 0.93302 1.01841 1.22989 1.03123 1.03709 0.90857 0.93577 0.93992 0.89160 0.76588 0.91173 0.92379 0.92328 0.87716 0.91242 0.88771 0.89500 0.92440 0.77567 0.91978 0.89486 0.91406 0.86149 0.87359 0.88606 0.88328 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.79 101.05 1.09 1.30 16 2 O -0.35 -3.42 8.24 -55.14 -0.45 -3.87 16 3 C 0.10 0.83 2.88 -27.88 -0.08 0.75 16 4 H 0.09 0.50 7.80 -51.93 -0.41 0.09 16 5 C 0.50 5.12 7.16 -10.99 -0.08 5.05 16 6 O -0.52 -7.75 16.16 -14.36 -0.23 -7.98 16 7 N -0.72 -5.83 4.70 -53.81 -0.25 -6.09 16 8 C 0.15 1.45 2.29 -67.93 -0.16 1.29 16 9 H 0.09 1.07 7.48 -51.93 -0.39 0.68 16 10 C -0.16 -1.46 9.43 37.16 0.35 -1.11 16 11 C -0.13 -1.29 3.35 -89.68 -0.30 -1.59 16 12 C 0.02 0.32 7.46 -2.77 -0.02 0.30 16 13 N -0.45 -7.31 5.65 -239.74 -1.35 -8.67 16 14 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 15 C 0.45 10.85 7.83 -10.99 -0.09 10.76 16 16 O -0.58 -16.08 16.01 5.54 0.09 -15.99 16 17 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 18 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 19 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 20 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 21 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 22 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 26 C 0.00 0.06 7.38 -2.76 -0.02 0.04 16 27 C -0.17 -1.13 5.61 -90.62 -0.51 -1.64 16 28 C -0.16 -1.17 9.87 -26.69 -0.26 -1.44 16 29 C -0.17 -0.97 10.23 -26.70 -0.27 -1.24 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 2.19 8.26 -40.82 -0.34 1.85 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.95 7.37 -51.93 -0.38 0.57 16 39 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 41 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 42 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 46 H 0.12 0.72 7.63 -51.93 -0.40 0.33 16 47 H 0.11 0.94 7.03 -51.93 -0.37 0.57 16 48 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 414.70 15.07 6.25 6.25 Total: -1.00 -35.45 414.70 -9.32 -44.77 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -8.39 Total: 9.80 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.61 Total: 4.49 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.94 Total: -53.82 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.60 Total: -27.84 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.45 -9.32 -44.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755373556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.248 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds