Wall clock time and date at job start Sat Apr 11 2020 05:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99926 * 2 1 4 4 H 1.08998 * 109.47129 * 28.12342 * 3 2 1 5 5 C 1.50696 * 109.47198 * 268.12270 * 3 2 1 6 6 O 1.21283 * 119.99995 * 0.02562 * 5 3 2 7 7 N 1.34776 * 120.00148 * 179.97438 * 5 3 2 8 8 C 1.46505 * 119.99969 * 180.02562 * 7 5 3 9 9 H 1.08999 * 109.46668 * 325.00056 * 8 7 5 10 10 C 1.53000 * 109.47281 * 85.00100 * 8 7 5 11 11 C 1.52999 * 109.47208 * 204.99980 * 8 7 5 12 12 C 1.53936 * 113.73702 * 161.84665 * 11 8 7 13 13 N 1.47958 * 86.18139 * 221.92449 * 12 11 8 14 14 C 1.46897 * 111.00290 * 137.58575 * 13 12 11 15 15 C 1.50691 * 109.47234 * 90.63382 * 14 13 12 16 16 O 1.21295 * 120.00488 * 0.02562 * 15 14 13 17 17 N 1.34785 * 119.99974 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99902 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00458 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00029 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99478 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00126 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46938 * 119.99757 * 22 20 18 25 25 H 1.48503 * 109.46901 * 239.99664 * 22 20 18 26 26 C 1.47965 * 90.76694 * 24.68704 * 13 12 11 27 27 C 1.53003 * 109.47429 * 148.12436 * 3 2 1 28 28 C 1.53003 * 117.49290 * 4.71297 * 27 3 2 29 29 C 1.53000 * 117.49922 * 296.05808 * 27 3 2 30 30 H 1.08996 * 109.47112 * 55.36361 * 1 2 3 31 31 H 1.09003 * 109.47070 * 295.36708 * 1 2 3 32 32 H 1.09000 * 109.47006 * 175.36619 * 1 2 3 33 33 H 0.96997 * 120.00508 * 0.02562 * 7 5 3 34 34 H 1.08998 * 109.47037 * 183.98797 * 10 8 7 35 35 H 1.09003 * 109.46717 * 303.98311 * 10 8 7 36 36 H 1.08993 * 109.47497 * 63.98352 * 10 8 7 37 37 H 1.09001 * 112.93812 * 293.56056 * 11 8 7 38 38 H 1.08997 * 113.75572 * 336.23882 * 12 11 8 39 39 H 1.09002 * 113.75789 * 107.60390 * 12 11 8 40 40 H 1.09001 * 109.47018 * 210.63945 * 14 13 12 41 41 H 1.09002 * 109.46870 * 330.63420 * 14 13 12 42 42 H 0.96996 * 119.99688 * 359.97438 * 17 15 14 43 43 H 0.97005 * 120.00126 * 180.02562 * 21 20 18 44 44 H 1.08993 * 113.76231 * 220.99535 * 26 13 12 45 45 H 1.08997 * 113.85471 * 89.63966 * 26 13 12 46 46 H 1.08993 * 115.55342 * 150.38046 * 27 3 2 47 47 H 1.08998 * 117.50377 * 359.97438 * 28 27 3 48 48 H 1.09010 * 117.49509 * 145.02146 * 28 27 3 49 49 H 1.08997 * 117.49924 * 214.98049 * 29 27 3 50 50 H 1.09006 * 117.49851 * 359.96905 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3300 2.0060 0.4844 5 6 2.2571 1.7455 -1.4200 6 8 1.9637 1.0134 -2.3414 7 7 2.8029 2.9529 -1.6662 8 6 3.0423 3.3808 -3.0467 9 1 3.3257 2.5186 -3.6503 10 6 1.7665 4.0047 -3.6159 11 6 4.1704 4.4141 -3.0720 12 6 4.8044 4.6054 -4.4616 13 7 6.1043 4.6337 -3.7555 14 6 7.1151 3.8537 -4.4819 15 6 7.8427 4.7514 -5.4492 16 8 7.5485 5.9256 -5.5257 17 7 8.8204 4.2494 -6.2295 18 6 9.4827 5.0663 -7.1091 19 1 9.2208 6.1118 -7.1772 20 6 10.4903 4.5487 -7.9139 21 7 10.8086 3.2765 -7.8315 22 14 11.3922 5.6615 -9.1130 23 1 10.8488 7.0399 -9.0137 24 1 12.8400 5.6747 -8.7828 25 1 11.2044 5.1543 -10.4960 26 6 5.5354 3.8520 -2.6354 27 6 3.3368 1.2732 0.7618 28 6 3.8341 -0.0864 1.2568 29 6 3.2867 0.9381 2.2538 30 1 -0.3633 0.5841 -0.8455 31 1 -0.3633 0.4403 0.9286 32 1 -0.3633 -1.0243 -0.0830 33 1 3.0372 3.5386 -0.9294 34 1 1.9226 4.2585 -4.6643 35 1 0.9455 3.2925 -3.5328 36 1 1.5224 4.9074 -3.0560 37 1 3.9023 5.3480 -2.5779 38 1 4.6820 3.7470 -5.1221 39 1 4.5425 5.5505 -4.9375 40 1 7.8268 3.4311 -3.7726 41 1 6.6272 3.0481 -5.0306 42 1 9.0559 3.3105 -6.1681 43 1 11.5123 2.9151 -8.3930 44 1 5.8574 4.1950 -1.6523 45 1 5.6261 2.7730 -2.7601 46 1 4.0855 1.9936 0.4326 47 1 3.2161 -0.9577 1.0403 48 1 4.9102 -0.2602 1.2538 49 1 4.0027 1.4379 2.9061 50 1 2.3086 0.7411 2.6928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755373556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:37 Heat of formation + Delta-G solvation = -79.694533 kcal Electronic energy + Delta-G solvation = -29652.731241 eV Core-core repulsion = 25488.198736 eV Total energy + Delta-G solvation = -4164.532505 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.68392 -40.92784 -39.67664 -38.84411 -37.10838 -36.27828 -35.88413 -33.33218 -32.74870 -30.87784 -29.44563 -27.47294 -27.22260 -26.88301 -25.62428 -23.32273 -23.11279 -22.19578 -21.30571 -21.00259 -20.62887 -19.90955 -18.66763 -17.92566 -17.73800 -17.35663 -16.79561 -16.69399 -16.57414 -16.34504 -15.92359 -15.74015 -15.63182 -15.29559 -15.20415 -14.82978 -14.45386 -14.20601 -14.07966 -13.90866 -13.70789 -13.52678 -13.41402 -13.00741 -12.90892 -12.53640 -12.48561 -12.42662 -12.38147 -12.24377 -12.13617 -11.96586 -11.86483 -11.65765 -11.61053 -11.51130 -11.32589 -11.07870 -10.39134 -10.22889 -10.14674 -10.02325 -9.62859 -8.47775 -5.96722 1.35478 1.40216 1.53226 1.54923 1.98727 2.04295 2.27609 2.70820 2.76716 2.98964 3.18128 3.33275 3.40722 3.58621 3.68040 3.81772 3.95259 4.09397 4.16158 4.18939 4.20392 4.25109 4.33019 4.38727 4.40100 4.47726 4.49844 4.52021 4.52765 4.55348 4.75045 4.77738 4.82471 4.82858 4.88652 4.97464 5.04150 5.18265 5.25124 5.31372 5.37908 5.39122 5.42280 5.50152 5.88953 6.01321 6.07517 6.57400 6.59336 7.11895 7.24965 7.55193 8.11403 8.70020 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.001979 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.148213 B =14148.723130 C =14684.578335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.106 3.894 4 H 0.119 0.881 5 C 0.494 3.506 6 O -0.575 6.575 7 N -0.704 5.704 8 C 0.157 3.843 9 H 0.063 0.937 10 C -0.156 4.156 11 C -0.097 4.097 12 C 0.013 3.987 13 N -0.479 5.479 14 C 0.023 3.977 15 C 0.443 3.557 16 O -0.617 6.617 17 N -0.577 5.577 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.016 4.016 21 N -0.922 5.922 22 Si 0.994 3.006 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.271 1.271 26 C 0.012 3.988 27 C -0.168 4.168 28 C -0.178 4.178 29 C -0.149 4.149 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.417 0.583 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.132 0.868 47 H 0.090 0.910 48 H 0.097 0.903 49 H 0.114 0.886 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.455 -5.444 22.075 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.296 6.296 3 C 0.045 3.955 4 H 0.136 0.864 5 C 0.280 3.720 6 O -0.454 6.454 7 N -0.358 5.358 8 C 0.052 3.948 9 H 0.081 0.919 10 C -0.215 4.215 11 C -0.116 4.116 12 C -0.116 4.116 13 N -0.202 5.202 14 C -0.109 4.109 15 C 0.230 3.770 16 O -0.503 6.503 17 N -0.215 5.215 18 C -0.461 4.461 19 H 0.096 0.904 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.116 4.116 27 C -0.186 4.186 28 C -0.215 4.215 29 C -0.186 4.186 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.254 0.746 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.142 0.858 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.090 0.910 46 H 0.150 0.850 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.132 0.868 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.271 -4.862 21.392 29.869 hybrid contribution 0.438 -0.581 -1.138 1.351 sum -19.833 -5.443 20.254 28.865 Atomic orbital electron populations 1.22992 0.79522 1.03864 1.00685 1.87974 1.21343 1.25979 1.94309 1.21562 0.96619 0.86947 0.90354 0.86379 1.21744 0.76588 0.81130 0.92494 1.90709 1.52428 1.54710 1.47542 1.45906 1.63070 1.17852 1.08950 1.20836 0.94784 0.96013 0.83145 0.91888 1.22085 0.96428 1.01112 1.01840 1.23138 0.92576 0.99630 0.96238 1.23953 0.89520 1.01910 0.96259 1.68349 1.04605 1.40416 1.06800 1.22345 0.97317 0.94399 0.96815 1.20785 0.82851 0.89128 0.84237 1.90478 1.68867 1.19160 1.71752 1.41983 1.32379 1.11991 1.35166 1.19695 1.15839 0.94118 1.16493 0.90375 1.26075 0.97764 0.97850 0.99826 1.69684 1.31944 1.13414 1.41271 0.84852 0.77907 0.77858 0.77597 1.19753 1.19502 1.19591 1.24059 0.93171 0.97247 0.97128 1.22390 0.96590 1.02160 0.97494 1.22902 1.01268 0.93343 1.04003 1.23051 1.03534 1.01813 0.90194 0.94725 0.91424 0.88769 0.74554 0.91512 0.93573 0.90398 0.85814 0.91432 0.90398 0.87636 0.90895 0.77143 0.91319 0.87323 0.90990 0.85024 0.89128 0.88448 0.86778 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.79 113.37 1.22 1.55 16 2 O -0.38 -6.98 8.24 -129.94 -1.07 -8.05 16 3 C 0.11 1.48 2.88 29.85 0.09 1.57 16 4 H 0.12 0.94 7.80 -2.39 -0.02 0.92 16 5 C 0.49 9.62 7.16 87.66 0.63 10.24 16 6 O -0.58 -17.17 16.16 16.00 0.26 -16.91 16 7 N -0.70 -9.83 4.70 -442.53 -2.08 -11.91 16 8 C 0.16 2.82 2.29 44.99 0.10 2.92 16 9 H 0.06 1.51 7.48 -2.39 -0.02 1.49 16 10 C -0.16 -2.64 9.43 71.98 0.68 -1.96 16 11 C -0.10 -1.78 3.35 -10.15 -0.03 -1.81 16 12 C 0.01 0.36 7.46 86.41 0.64 1.00 16 13 N -0.48 -15.12 5.65 -912.39 -5.15 -20.27 16 14 C 0.02 0.82 5.28 85.55 0.45 1.27 16 15 C 0.44 21.88 7.83 87.65 0.69 22.56 16 16 O -0.62 -35.40 16.01 -3.08 -0.05 -35.45 16 17 N -0.58 -30.64 5.29 -306.98 -1.62 -32.26 16 18 C -0.33 -19.34 9.68 84.04 0.81 -18.52 16 19 H 0.08 4.86 7.16 -2.91 -0.02 4.83 16 20 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 21 N -0.92 -50.84 13.05 21.66 0.28 -50.55 16 22 Si 0.99 43.77 29.55 68.60 2.03 45.80 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 C 0.01 0.25 7.38 86.41 0.64 0.89 16 27 C -0.17 -1.90 5.61 -10.79 -0.06 -1.96 16 28 C -0.18 -2.45 9.87 30.62 0.30 -2.15 16 29 C -0.15 -1.29 10.23 30.62 0.31 -0.98 16 30 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.42 3.07 8.26 -92.71 -0.77 2.31 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 1.86 7.37 -2.39 -0.02 1.85 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.11 3.35 8.08 -2.39 -0.02 3.33 16 41 H 0.07 2.37 7.38 -2.39 -0.02 2.35 16 42 H 0.39 19.95 7.90 -92.71 -0.73 19.22 16 43 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 44 H 0.11 1.83 8.14 -2.39 -0.02 1.82 16 45 H 0.07 1.48 7.88 -2.39 -0.02 1.46 16 46 H 0.13 1.16 7.63 -2.39 -0.02 1.14 16 47 H 0.09 1.57 7.03 -2.39 -0.02 1.55 16 48 H 0.10 1.25 8.14 -2.38 -0.02 1.24 16 49 H 0.11 0.66 8.14 -2.39 -0.02 0.65 16 50 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -79.36 414.70 -1.01 -80.38 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.55 Total: 35.00 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 6.94 Total: 14.24 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -8.57 Total: -115.00 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -0.86 Total: -60.41 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -79.36 -1.01 -80.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755373556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.683 kcal (2) G-P(sol) polarization free energy of solvation -79.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds