Wall clock time and date at job start Sat Apr 11 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99608 * 2 1 4 4 H 1.08996 * 109.47326 * 30.15797 * 3 2 1 5 5 C 1.50712 * 109.46913 * 270.15521 * 3 2 1 6 6 O 1.21275 * 119.99818 * 0.02562 * 5 3 2 7 7 N 1.34771 * 119.99839 * 179.97438 * 5 3 2 8 8 C 1.46496 * 120.00149 * 180.02562 * 7 5 3 9 9 H 1.09003 * 109.47129 * 35.00270 * 8 7 5 10 10 C 1.53008 * 109.47387 * 275.00737 * 8 7 5 11 11 C 1.52999 * 109.47405 * 155.00515 * 8 7 5 12 12 C 1.53940 * 113.72956 * 278.76714 * 11 8 7 13 13 N 1.48186 * 86.09918 * 221.95630 * 12 11 8 14 14 C 1.46902 * 111.06898 * 137.52285 * 13 12 11 15 15 C 1.50700 * 109.46913 * 90.56921 * 14 13 12 16 16 O 1.21292 * 120.00615 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00062 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00432 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99826 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00328 * 179.97438 * 18 17 15 21 21 N 1.31408 * 119.99761 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00086 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46978 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46975 * 119.99982 * 22 20 18 25 25 H 1.48496 * 109.47072 * 240.00361 * 22 20 18 26 26 C 1.47954 * 90.80040 * 24.60409 * 13 12 11 27 27 C 1.53002 * 109.47316 * 150.15989 * 3 2 1 28 28 C 1.53002 * 117.49549 * 3.61395 * 27 3 2 29 29 C 1.53003 * 117.49673 * 294.95472 * 27 3 2 30 30 H 1.08995 * 109.46911 * 304.33775 * 1 2 3 31 31 H 1.08994 * 109.47107 * 64.34373 * 1 2 3 32 32 H 1.08996 * 109.46599 * 184.34321 * 1 2 3 33 33 H 0.97004 * 119.99987 * 0.02562 * 7 5 3 34 34 H 1.08995 * 109.47155 * 179.97438 * 10 8 7 35 35 H 1.08995 * 109.46725 * 299.99536 * 10 8 7 36 36 H 1.08997 * 109.47104 * 59.99522 * 10 8 7 37 37 H 1.08996 * 112.94029 * 50.33579 * 11 8 7 38 38 H 1.08994 * 113.76357 * 336.23746 * 12 11 8 39 39 H 1.09002 * 113.75855 * 107.60726 * 12 11 8 40 40 H 1.08999 * 109.46983 * 210.56452 * 14 13 12 41 41 H 1.08993 * 109.47007 * 330.56573 * 14 13 12 42 42 H 0.97008 * 119.99896 * 359.97438 * 17 15 14 43 43 H 0.97005 * 119.99892 * 179.97438 * 21 20 18 44 44 H 1.09008 * 113.75994 * 221.08211 * 26 13 12 45 45 H 1.09000 * 113.76513 * 89.71822 * 26 13 12 46 46 H 1.08997 * 115.55163 * 149.28255 * 27 3 2 47 47 H 1.08999 * 117.50066 * 359.97438 * 28 27 3 48 48 H 1.09000 * 117.50104 * 145.02522 * 28 27 3 49 49 H 1.08997 * 117.49425 * 214.98225 * 29 27 3 50 50 H 1.09000 * 117.49542 * 359.97359 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3462 1.9988 0.5163 5 6 2.2110 1.7660 -1.4209 6 8 1.8877 1.0472 -2.3427 7 7 2.7487 2.9770 -1.6672 8 6 2.9434 3.4249 -3.0484 9 1 2.1298 3.0507 -3.6698 10 6 4.2759 2.8884 -3.5756 11 6 2.9563 4.9542 -3.0916 12 6 1.5525 5.5859 -3.0889 13 7 2.0809 6.5188 -4.1118 14 6 1.1058 6.7271 -5.1906 15 6 0.2265 7.9034 -4.8526 16 8 0.3951 8.5084 -3.8150 17 7 -0.7481 8.2825 -5.7029 18 6 -1.5484 9.3523 -5.3953 19 1 -1.3982 9.8910 -4.4714 20 6 -2.5528 9.7434 -6.2722 21 7 -2.7352 9.0883 -7.3966 22 14 -3.6437 11.2006 -5.8527 23 1 -3.2367 11.7617 -4.5395 24 1 -3.5033 12.2423 -6.9018 25 1 -5.0588 10.7557 -5.7831 26 6 3.1094 5.5326 -4.5099 27 6 3.3607 1.2626 0.7178 28 6 3.8616 -0.1004 1.1996 29 6 3.3567 0.9313 2.2115 30 1 -0.3633 0.5797 0.8485 31 1 -0.3633 0.4449 -0.9263 32 1 -0.3632 -1.0247 0.0778 33 1 3.0069 3.5520 -0.9299 34 1 4.4204 3.2213 -4.6033 35 1 5.0894 3.2626 -2.9543 36 1 4.2666 1.7990 -3.5448 37 1 3.6368 5.3941 -2.3626 38 1 0.7717 4.9227 -3.4609 39 1 1.2897 6.0680 -2.1472 40 1 1.6331 6.9240 -6.1240 41 1 0.4911 5.8340 -5.3020 42 1 -0.8833 7.7984 -6.5327 43 1 -3.4367 9.3611 -8.0087 44 1 4.0884 5.9721 -4.7017 45 1 2.7850 4.8537 -5.2985 46 1 4.1049 1.9754 0.3624 47 1 3.2289 -0.9665 1.0057 48 1 4.9354 -0.2842 1.1617 49 1 4.0983 1.4259 2.8386 50 1 2.3918 0.7443 2.6828 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755373559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:52 Heat of formation + Delta-G solvation = -53.326020 kcal Electronic energy + Delta-G solvation = -29579.868236 eV Core-core repulsion = 25416.479156 eV Total energy + Delta-G solvation = -4163.389081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.75291 -39.93453 -38.25978 -37.68208 -36.53386 -35.30874 -33.86537 -31.88906 -31.19811 -29.64445 -28.76524 -26.59639 -26.09332 -25.56276 -24.12833 -22.74301 -22.32217 -21.48768 -20.52689 -19.68697 -19.19620 -18.00701 -17.72167 -17.18939 -16.56410 -16.16046 -16.00107 -15.56548 -15.21295 -15.15160 -14.80275 -14.61133 -14.49045 -14.19636 -13.82303 -13.72504 -13.41545 -13.26774 -13.05995 -12.72122 -12.56758 -12.35204 -11.96034 -11.91094 -11.83589 -11.73725 -11.61464 -11.38427 -11.10925 -11.02025 -10.96194 -10.78897 -10.66614 -10.64577 -10.56570 -10.33471 -10.20313 -9.49425 -9.47332 -9.31862 -8.69893 -8.15363 -7.94113 -6.39918 -3.80569 2.32656 2.72811 3.17036 3.27191 3.29730 3.34518 3.51044 3.89322 3.95024 4.14650 4.22286 4.29617 4.42811 4.48328 4.53618 4.70793 4.78698 4.91387 4.96565 5.02033 5.05447 5.16376 5.17794 5.21120 5.23936 5.29654 5.38185 5.42348 5.44327 5.48196 5.51852 5.65105 5.68928 5.69462 5.75679 5.76669 5.88267 5.91506 6.01706 6.13604 6.29544 6.32249 6.58842 6.62605 7.17960 7.25915 7.56860 7.99439 8.08299 8.64331 9.20481 9.57057 10.09493 10.78089 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.002027 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.717194 B =13813.020783 C =14532.709816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.103 3.897 4 H 0.092 0.908 5 C 0.496 3.504 6 O -0.525 6.525 7 N -0.721 5.721 8 C 0.150 3.850 9 H 0.088 0.912 10 C -0.161 4.161 11 C -0.125 4.125 12 C 0.018 3.982 13 N -0.449 5.449 14 C 0.010 3.990 15 C 0.447 3.553 16 O -0.576 6.576 17 N -0.568 5.568 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.020 3.980 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.010 3.990 27 C -0.163 4.163 28 C -0.158 4.158 29 C -0.170 4.170 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.391 0.609 43 H 0.270 0.730 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.119 0.881 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.276 -18.573 14.078 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.273 6.273 3 C 0.042 3.958 4 H 0.109 0.891 5 C 0.281 3.719 6 O -0.400 6.400 7 N -0.374 5.374 8 C 0.045 3.955 9 H 0.106 0.894 10 C -0.219 4.219 11 C -0.144 4.144 12 C -0.111 4.111 13 N -0.171 5.171 14 C -0.122 4.122 15 C 0.232 3.768 16 O -0.459 6.459 17 N -0.205 5.205 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.181 4.181 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.120 4.120 27 C -0.182 4.182 28 C -0.195 4.195 29 C -0.207 4.207 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.137 0.863 47 H 0.127 0.873 48 H 0.112 0.888 49 H 0.116 0.884 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.273 -18.158 14.124 26.559 hybrid contribution -1.153 0.254 -0.573 1.312 sum 12.119 -17.904 13.552 25.516 Atomic orbital electron populations 1.22900 0.80315 1.03206 1.00474 1.87963 1.20235 1.24719 1.94369 1.21448 0.95385 0.86964 0.92050 0.89068 1.21222 0.77223 0.81479 0.91943 1.90717 1.49475 1.53943 1.45852 1.46100 1.64221 1.18145 1.08953 1.21059 0.98665 0.92984 0.82763 0.89423 1.22130 0.96626 1.01628 1.01513 1.23320 0.99096 0.92817 0.99200 1.24014 0.94760 0.93511 0.98848 1.68407 1.08409 1.32224 1.08065 1.22480 0.95390 0.98459 0.95916 1.19695 0.83652 0.87274 0.86178 1.90514 1.71998 1.57196 1.26231 1.41894 1.29102 1.29377 1.20159 1.19738 1.10121 1.06780 1.06004 0.87937 1.25260 0.98254 0.99240 0.95346 1.69622 1.33612 1.40964 1.10253 0.85805 0.79318 0.80601 0.78648 1.19245 1.20758 1.20798 1.23953 0.98788 0.93991 0.95222 1.22285 0.96502 1.02321 0.97061 1.22901 1.01264 0.93293 1.02020 1.23002 1.03359 1.03542 0.90759 0.93857 0.93287 0.89169 0.76506 0.91327 0.92338 0.92183 0.87778 0.91481 0.89136 0.89406 0.92484 0.77563 0.91974 0.89062 0.91196 0.86309 0.87334 0.88781 0.88357 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.83 101.05 1.09 1.32 16 2 O -0.36 -3.63 8.25 -55.14 -0.46 -4.08 16 3 C 0.10 0.89 2.87 -27.88 -0.08 0.81 16 4 H 0.09 0.63 7.72 -51.93 -0.40 0.23 16 5 C 0.50 5.41 7.14 -10.98 -0.08 5.33 16 6 O -0.52 -7.95 16.13 -14.35 -0.23 -8.18 16 7 N -0.72 -6.25 4.82 -53.80 -0.26 -6.51 16 8 C 0.15 1.45 2.38 -67.93 -0.16 1.29 16 9 H 0.09 1.05 7.42 -51.93 -0.39 0.67 16 10 C -0.16 -1.40 9.31 37.16 0.35 -1.06 16 11 C -0.12 -1.28 3.46 -89.68 -0.31 -1.59 16 12 C 0.02 0.25 7.53 -2.63 -0.02 0.23 16 13 N -0.45 -7.31 5.65 -239.53 -1.35 -8.66 16 14 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 15 C 0.45 10.81 7.83 -10.98 -0.09 10.72 16 16 O -0.58 -16.04 16.01 5.55 0.09 -15.96 16 17 N -0.57 -14.68 5.29 -10.96 -0.06 -14.74 16 18 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 19 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 20 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 21 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 22 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 C 0.01 0.12 6.65 -2.76 -0.02 0.10 16 27 C -0.16 -1.12 5.61 -90.62 -0.51 -1.63 16 28 C -0.16 -1.11 9.87 -26.69 -0.26 -1.37 16 29 C -0.17 -0.97 10.24 -26.69 -0.27 -1.25 16 30 H 0.04 0.28 7.99 -51.93 -0.41 -0.14 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 2.48 8.27 -40.82 -0.34 2.15 16 34 H 0.07 0.55 7.52 -51.93 -0.39 0.16 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.95 7.33 -51.93 -0.38 0.57 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 41 H 0.06 0.94 7.39 -51.93 -0.38 0.55 16 42 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 45 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 46 H 0.12 0.68 7.64 -51.93 -0.40 0.28 16 47 H 0.11 0.90 7.02 -51.93 -0.36 0.54 16 48 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 413.29 15.07 6.23 6.23 Total: -1.00 -35.34 413.29 -9.31 -44.65 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -8.34 Total: 10.19 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.63 Total: 4.96 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.95 Total: -54.07 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.60 Total: -28.22 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.34 -9.31 -44.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755373559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.676 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds