Wall clock time and date at job start Sat Apr 11 2020 05:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99608 * 2 1 4 4 H 1.08996 * 109.47326 * 30.15797 * 3 2 1 5 5 C 1.50712 * 109.46913 * 270.15521 * 3 2 1 6 6 O 1.21275 * 119.99818 * 0.02562 * 5 3 2 7 7 N 1.34771 * 119.99839 * 179.97438 * 5 3 2 8 8 C 1.46496 * 120.00149 * 180.02562 * 7 5 3 9 9 H 1.09003 * 109.47129 * 35.00270 * 8 7 5 10 10 C 1.53008 * 109.47387 * 275.00737 * 8 7 5 11 11 C 1.52999 * 109.47405 * 155.00515 * 8 7 5 12 12 C 1.53940 * 113.72956 * 278.76714 * 11 8 7 13 13 N 1.48186 * 86.09918 * 221.95630 * 12 11 8 14 14 C 1.46902 * 111.06898 * 137.52285 * 13 12 11 15 15 C 1.50700 * 109.46913 * 90.56921 * 14 13 12 16 16 O 1.21292 * 120.00615 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00062 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00432 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99826 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00328 * 179.97438 * 18 17 15 21 21 N 1.31408 * 119.99761 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00086 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46978 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46975 * 119.99982 * 22 20 18 25 25 H 1.48496 * 109.47072 * 240.00361 * 22 20 18 26 26 C 1.47954 * 90.80040 * 24.60409 * 13 12 11 27 27 C 1.53002 * 109.47316 * 150.15989 * 3 2 1 28 28 C 1.53002 * 117.49549 * 3.61395 * 27 3 2 29 29 C 1.53003 * 117.49673 * 294.95472 * 27 3 2 30 30 H 1.08995 * 109.46911 * 304.33775 * 1 2 3 31 31 H 1.08994 * 109.47107 * 64.34373 * 1 2 3 32 32 H 1.08996 * 109.46599 * 184.34321 * 1 2 3 33 33 H 0.97004 * 119.99987 * 0.02562 * 7 5 3 34 34 H 1.08995 * 109.47155 * 179.97438 * 10 8 7 35 35 H 1.08995 * 109.46725 * 299.99536 * 10 8 7 36 36 H 1.08997 * 109.47104 * 59.99522 * 10 8 7 37 37 H 1.08996 * 112.94029 * 50.33579 * 11 8 7 38 38 H 1.08994 * 113.76357 * 336.23746 * 12 11 8 39 39 H 1.09002 * 113.75855 * 107.60726 * 12 11 8 40 40 H 1.08999 * 109.46983 * 210.56452 * 14 13 12 41 41 H 1.08993 * 109.47007 * 330.56573 * 14 13 12 42 42 H 0.97008 * 119.99896 * 359.97438 * 17 15 14 43 43 H 0.97005 * 119.99892 * 179.97438 * 21 20 18 44 44 H 1.09008 * 113.75994 * 221.08211 * 26 13 12 45 45 H 1.09000 * 113.76513 * 89.71822 * 26 13 12 46 46 H 1.08997 * 115.55163 * 149.28255 * 27 3 2 47 47 H 1.08999 * 117.50066 * 359.97438 * 28 27 3 48 48 H 1.09000 * 117.50104 * 145.02522 * 28 27 3 49 49 H 1.08997 * 117.49425 * 214.98225 * 29 27 3 50 50 H 1.09000 * 117.49542 * 359.97359 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3462 1.9988 0.5163 5 6 2.2110 1.7660 -1.4209 6 8 1.8877 1.0472 -2.3427 7 7 2.7487 2.9770 -1.6672 8 6 2.9434 3.4249 -3.0484 9 1 2.1298 3.0507 -3.6698 10 6 4.2759 2.8884 -3.5756 11 6 2.9563 4.9542 -3.0916 12 6 1.5525 5.5859 -3.0889 13 7 2.0809 6.5188 -4.1118 14 6 1.1058 6.7271 -5.1906 15 6 0.2265 7.9034 -4.8526 16 8 0.3951 8.5084 -3.8150 17 7 -0.7481 8.2825 -5.7029 18 6 -1.5484 9.3523 -5.3953 19 1 -1.3982 9.8910 -4.4714 20 6 -2.5528 9.7434 -6.2722 21 7 -2.7352 9.0883 -7.3966 22 14 -3.6437 11.2006 -5.8527 23 1 -3.2367 11.7617 -4.5395 24 1 -3.5033 12.2423 -6.9018 25 1 -5.0588 10.7557 -5.7831 26 6 3.1094 5.5326 -4.5099 27 6 3.3607 1.2626 0.7178 28 6 3.8616 -0.1004 1.1996 29 6 3.3567 0.9313 2.2115 30 1 -0.3633 0.5797 0.8485 31 1 -0.3633 0.4449 -0.9263 32 1 -0.3632 -1.0247 0.0778 33 1 3.0069 3.5520 -0.9299 34 1 4.4204 3.2213 -4.6033 35 1 5.0894 3.2626 -2.9543 36 1 4.2666 1.7990 -3.5448 37 1 3.6368 5.3941 -2.3626 38 1 0.7717 4.9227 -3.4609 39 1 1.2897 6.0680 -2.1472 40 1 1.6331 6.9240 -6.1240 41 1 0.4911 5.8340 -5.3020 42 1 -0.8833 7.7984 -6.5327 43 1 -3.4367 9.3611 -8.0087 44 1 4.0884 5.9721 -4.7017 45 1 2.7850 4.8537 -5.2985 46 1 4.1049 1.9754 0.3624 47 1 3.2289 -0.9665 1.0057 48 1 4.9354 -0.2842 1.1617 49 1 4.0983 1.4259 2.8386 50 1 2.3918 0.7443 2.6828 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755373559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:50 Heat of formation + Delta-G solvation = -79.996495 kcal Electronic energy + Delta-G solvation = -29581.024755 eV Core-core repulsion = 25416.479156 eV Total energy + Delta-G solvation = -4164.545599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67399 -40.94960 -39.68285 -38.85775 -37.14312 -36.27906 -35.88897 -33.33732 -32.76345 -30.83618 -29.46977 -27.61423 -27.17542 -26.82986 -25.57855 -23.37330 -23.13934 -22.26069 -21.30051 -20.99973 -20.59014 -19.91013 -18.67334 -17.97573 -17.80771 -17.27666 -16.87181 -16.67578 -16.46399 -16.39405 -16.07081 -15.71802 -15.64861 -15.30155 -15.17535 -14.82029 -14.50746 -14.22604 -14.01851 -13.94771 -13.69208 -13.54057 -13.40077 -13.00001 -12.74727 -12.67793 -12.56085 -12.42697 -12.42551 -12.26103 -12.13671 -11.91567 -11.82955 -11.66462 -11.65607 -11.51702 -11.35316 -11.09905 -10.39231 -10.25420 -10.16069 -10.02694 -9.61670 -8.48177 -5.97115 1.35136 1.39896 1.51618 1.54498 1.98275 2.04035 2.27321 2.67868 2.76927 2.96760 3.17751 3.29192 3.44745 3.56384 3.63770 3.80675 3.93469 4.10646 4.16375 4.17694 4.22490 4.23804 4.32052 4.36719 4.41699 4.46292 4.47239 4.50543 4.52256 4.53262 4.76106 4.78801 4.80641 4.83717 4.86898 4.98643 5.01761 5.19556 5.22768 5.31215 5.36656 5.38901 5.42470 5.52276 5.88926 5.96193 6.07658 6.53610 6.59012 7.11535 7.21587 7.54892 8.11133 8.69573 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.002027 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.717194 B =13813.020783 C =14532.709816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.103 3.897 4 H 0.110 0.890 5 C 0.493 3.507 6 O -0.574 6.574 7 N -0.708 5.708 8 C 0.155 3.845 9 H 0.063 0.937 10 C -0.154 4.154 11 C -0.096 4.096 12 C 0.010 3.990 13 N -0.481 5.481 14 C 0.023 3.977 15 C 0.442 3.558 16 O -0.618 6.618 17 N -0.577 5.577 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.016 4.016 21 N -0.922 5.922 22 Si 0.994 3.006 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.270 1.270 26 C 0.015 3.985 27 C -0.167 4.167 28 C -0.171 4.171 29 C -0.153 4.153 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.101 0.899 33 H 0.415 0.585 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.123 0.877 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.133 0.867 47 H 0.090 0.910 48 H 0.103 0.897 49 H 0.116 0.884 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.462 -18.469 14.784 27.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.292 6.292 3 C 0.041 3.959 4 H 0.128 0.872 5 C 0.280 3.720 6 O -0.453 6.453 7 N -0.362 5.362 8 C 0.050 3.950 9 H 0.081 0.919 10 C -0.212 4.212 11 C -0.115 4.115 12 C -0.119 4.119 13 N -0.204 5.204 14 C -0.109 4.109 15 C 0.229 3.771 16 O -0.503 6.503 17 N -0.215 5.215 18 C -0.461 4.461 19 H 0.096 0.904 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.113 4.113 27 C -0.186 4.186 28 C -0.208 4.208 29 C -0.190 4.190 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.119 0.881 33 H 0.253 0.747 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.141 0.859 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.151 0.849 47 H 0.109 0.891 48 H 0.122 0.878 49 H 0.134 0.866 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.482 -18.053 14.831 27.489 hybrid contribution -1.510 0.201 -0.780 1.712 sum 12.972 -17.852 14.051 26.161 Atomic orbital electron populations 1.22991 0.79680 1.04192 1.00274 1.87948 1.21112 1.25830 1.94306 1.21604 0.96772 0.86752 0.90745 0.87220 1.21719 0.76351 0.81427 0.92507 1.90693 1.51717 1.55448 1.47438 1.45998 1.63239 1.17717 1.09196 1.20919 0.98643 0.92422 0.82979 0.91862 1.22069 0.96238 1.00408 1.02496 1.23129 0.96611 0.92754 0.99047 1.24031 0.96891 0.93350 0.97651 1.68376 1.09061 1.34713 1.08232 1.22351 0.95213 0.95955 0.97387 1.20809 0.83202 0.88065 0.84982 1.90474 1.73015 1.58971 1.27874 1.41985 1.29608 1.29231 1.20700 1.19686 1.12091 1.08387 1.05983 0.90421 1.26071 0.98876 1.01594 0.94966 1.69682 1.34038 1.41894 1.10661 0.84855 0.77680 0.77413 0.78286 1.19766 1.19512 1.19570 1.24076 0.98072 0.92985 0.96188 1.22349 0.95774 1.02530 0.97916 1.22912 1.01559 0.92973 1.03380 1.23069 1.03706 1.02124 0.90122 0.91763 0.95305 0.88108 0.74745 0.90337 0.90458 0.93961 0.85896 0.92090 0.90741 0.87394 0.90872 0.77117 0.91317 0.87262 0.89930 0.84892 0.89123 0.87845 0.86580 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.83 113.37 1.23 1.63 16 2 O -0.37 -7.60 8.25 -129.94 -1.07 -8.67 16 3 C 0.10 1.67 2.87 29.85 0.09 1.75 16 4 H 0.11 1.34 7.72 -2.39 -0.02 1.32 16 5 C 0.49 10.58 7.14 87.66 0.63 11.20 16 6 O -0.57 -17.85 16.13 16.02 0.26 -17.59 16 7 N -0.71 -11.29 4.82 -442.53 -2.13 -13.43 16 8 C 0.16 2.78 2.38 44.99 0.11 2.89 16 9 H 0.06 1.50 7.42 -2.39 -0.02 1.48 16 10 C -0.15 -2.35 9.31 71.98 0.67 -1.68 16 11 C -0.10 -1.76 3.46 -10.15 -0.04 -1.79 16 12 C 0.01 0.27 7.53 86.37 0.65 0.92 16 13 N -0.48 -15.09 5.65 -911.75 -5.15 -20.24 16 14 C 0.02 0.80 5.28 85.56 0.45 1.25 16 15 C 0.44 21.74 7.83 87.66 0.69 22.43 16 16 O -0.62 -35.32 16.01 -3.07 -0.05 -35.37 16 17 N -0.58 -30.48 5.29 -306.98 -1.62 -32.10 16 18 C -0.33 -19.26 9.68 84.04 0.81 -18.44 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 21 N -0.92 -50.55 13.05 21.66 0.28 -50.27 16 22 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 C 0.02 0.32 6.65 86.41 0.57 0.89 16 27 C -0.17 -2.00 5.61 -10.79 -0.06 -2.06 16 28 C -0.17 -2.21 9.87 30.62 0.30 -1.91 16 29 C -0.15 -1.42 10.24 30.62 0.31 -1.11 16 30 H 0.06 0.75 7.99 -2.39 -0.02 0.73 16 31 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.42 4.18 8.27 -92.71 -0.77 3.41 16 34 H 0.08 1.05 7.52 -2.39 -0.02 1.03 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 1.73 7.33 -2.39 -0.02 1.71 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.11 3.35 8.08 -2.39 -0.02 3.33 16 41 H 0.07 2.34 7.39 -2.39 -0.02 2.32 16 42 H 0.40 19.82 7.90 -92.70 -0.73 19.08 16 43 H 0.28 14.18 8.31 -92.70 -0.77 13.41 16 44 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.08 1.52 7.88 -2.39 -0.02 1.50 16 46 H 0.13 1.17 7.64 -2.39 -0.02 1.15 16 47 H 0.09 1.51 7.02 -2.39 -0.02 1.49 16 48 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -78.99 413.29 -1.13 -80.12 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -0.55 Total: 36.40 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.88 Total: 15.59 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -8.62 Total: -116.04 kcal Atomic # 8 Polarization: -60.77 SS G_CDS: -0.86 Total: -61.64 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -78.99 -1.13 -80.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755373559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.123 kcal (2) G-P(sol) polarization free energy of solvation -78.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds