Wall clock time and date at job start Sat Apr 11 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50697 * 120.00091 * 2 1 4 4 C 1.32990 * 119.99864 * 180.02562 * 2 1 3 5 5 C 1.47098 * 120.00229 * 20.47330 * 4 2 1 6 6 O 1.21616 * 120.00013 * 9.14225 * 5 4 2 7 7 N 1.34776 * 120.00270 * 189.13864 * 5 4 2 8 8 C 1.47154 * 120.98114 * 174.17973 * 7 5 4 9 9 C 1.53295 * 108.38641 * 129.19101 * 8 7 5 10 10 O 1.42967 * 109.22283 * 52.30061 * 9 8 7 11 11 C 1.42961 * 114.16374 * 297.42137 * 10 9 8 12 12 H 1.09000 * 109.51631 * 302.65576 * 11 10 9 13 13 C 1.53006 * 109.51224 * 182.55522 * 11 10 9 14 14 H 1.09001 * 109.47101 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46970 * 59.99729 * 13 11 10 16 16 N 1.46903 * 109.46836 * 300.00087 * 13 11 10 17 17 C 1.46902 * 110.99775 * 204.99799 * 16 13 11 18 18 C 1.50697 * 109.47110 * 179.97438 * 17 16 13 19 19 O 1.21295 * 120.00086 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00250 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00119 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00339 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00072 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99795 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00261 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46846 * 59.99931 * 25 23 21 27 27 H 1.48502 * 109.47167 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46844 * 299.99859 * 25 23 21 29 29 C 1.47152 * 120.98380 * 353.89470 * 7 5 4 30 30 H 1.08993 * 109.47210 * 182.23375 * 1 2 3 31 31 H 1.09004 * 109.46984 * 302.23465 * 1 2 3 32 32 H 1.09007 * 109.46793 * 62.22874 * 1 2 3 33 33 H 1.09004 * 109.47286 * 269.99840 * 3 2 1 34 34 H 1.08997 * 109.47389 * 29.99942 * 3 2 1 35 35 H 1.09001 * 109.47419 * 149.99939 * 3 2 1 36 36 H 1.08003 * 119.99969 * 200.47912 * 4 2 1 37 37 H 1.09000 * 109.68107 * 248.91233 * 8 7 5 38 38 H 1.08999 * 109.68269 * 9.42783 * 8 7 5 39 39 H 1.08996 * 109.51603 * 172.22563 * 9 8 7 40 40 H 1.08999 * 109.51067 * 292.32790 * 9 8 7 41 41 H 1.09001 * 109.47239 * 300.00579 * 15 13 11 42 42 H 1.09002 * 109.46929 * 60.00527 * 15 13 11 43 43 H 1.08998 * 109.46927 * 179.97438 * 15 13 11 44 44 H 1.00895 * 111.00090 * 81.04252 * 16 13 11 45 45 H 1.08999 * 109.47027 * 299.99957 * 17 16 13 46 46 H 1.09000 * 109.46783 * 60.00014 * 17 16 13 47 47 H 0.96998 * 119.99909 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99845 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.67986 * 350.53427 * 29 7 5 50 50 H 1.08996 * 109.68005 * 111.08488 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1517 -0.0005 5 6 1.5061 -2.3852 -0.4466 6 8 0.4095 -2.3294 -0.9694 7 7 2.1114 -3.5773 -0.2761 8 6 1.4148 -4.8333 -0.5967 9 6 2.3242 -5.6733 -1.5008 10 8 3.6101 -5.7988 -0.8888 11 6 4.2987 -4.5582 -0.7140 12 1 4.4096 -4.0642 -1.6793 13 6 5.6808 -4.8211 -0.1126 14 1 6.2050 -3.8748 0.0208 15 6 6.4837 -5.7212 -1.0539 16 7 5.5301 -5.4847 1.1893 17 6 6.6966 -5.2336 2.0462 18 6 6.5060 -5.9278 3.3701 19 8 5.4975 -6.5684 3.5794 20 7 7.4562 -5.8370 4.3216 21 6 7.2830 -6.4691 5.5258 22 1 6.3850 -7.0394 5.7122 23 6 8.2624 -6.3750 6.5070 24 7 9.3545 -5.6798 6.2808 25 14 8.0269 -7.2368 8.1475 26 1 7.8831 -8.6976 7.9231 27 1 9.2057 -6.9822 9.0141 28 1 6.8044 -6.7149 8.8097 29 6 3.4905 -3.6611 0.2303 30 1 -0.3633 -1.0268 0.0401 31 1 -0.3633 0.5482 0.8693 32 1 -0.3633 0.4789 -0.9094 33 1 2.4422 1.6197 -1.0277 34 1 1.6715 2.0647 0.5138 35 1 3.2129 1.1748 0.5138 36 1 3.2007 -1.1815 0.3267 37 1 1.2036 -5.3807 0.3219 38 1 0.4819 -4.6135 -1.1158 39 1 1.8880 -6.6628 -1.6376 40 1 2.4272 -5.1838 -2.4692 41 1 5.9593 -6.6675 -1.1870 42 1 6.5955 -5.2289 -2.0199 43 1 7.4685 -5.9082 -0.6257 44 1 5.3721 -6.4745 1.0745 45 1 7.5937 -5.6171 1.5602 46 1 6.8025 -4.1613 2.2106 47 1 8.2625 -5.3245 4.1544 48 1 10.0383 -5.6144 6.9656 49 1 3.9324 -2.6651 0.2583 50 1 3.4882 -4.0905 1.2322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755437475.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:17 Heat of formation + Delta-G solvation = -109.774419 kcal Electronic energy + Delta-G solvation = -30111.322015 eV Core-core repulsion = 25945.485148 eV Total energy + Delta-G solvation = -4165.836867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49515 -40.22789 -39.68635 -37.37885 -36.40406 -35.87239 -35.72644 -33.29839 -32.80100 -30.97964 -29.51886 -28.67036 -28.07040 -27.86964 -25.81645 -25.01539 -23.83678 -21.53522 -21.06520 -21.04728 -19.88733 -19.04893 -18.51691 -17.80811 -17.55687 -16.86914 -16.70971 -16.53864 -16.30233 -16.04506 -15.82058 -15.65794 -15.32256 -15.10750 -14.85690 -14.85382 -14.76332 -14.15805 -14.02054 -13.91246 -13.49675 -13.46510 -13.32386 -13.19275 -13.13745 -12.99478 -12.69722 -12.68304 -12.49982 -12.42618 -12.39472 -12.23688 -12.11836 -11.85020 -11.55990 -11.47547 -11.10255 -10.58517 -10.29119 -9.98115 -9.95943 -9.51227 -9.14087 -8.44361 -5.92371 0.28354 1.40684 1.42426 1.52915 1.92983 2.10779 2.20209 2.30706 2.79024 2.97307 3.23568 3.54457 3.57693 3.75673 3.84298 3.93074 4.09039 4.14216 4.17119 4.28153 4.31584 4.33321 4.44309 4.52513 4.54518 4.56418 4.57129 4.67585 4.67921 4.71665 4.78520 4.81409 4.88153 4.94974 5.00198 5.02722 5.12138 5.17823 5.36919 5.42476 5.43204 5.55601 5.64246 5.93388 6.12382 6.30280 6.38173 6.46425 6.64249 7.12797 7.16249 7.61088 8.17256 8.72827 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.002482 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.807365 B =11276.953252 C =12401.856610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.017 4.017 3 C -0.126 4.126 4 C -0.264 4.264 5 C 0.544 3.456 6 O -0.578 6.578 7 N -0.613 5.613 8 C 0.075 3.925 9 C 0.055 3.945 10 O -0.382 6.382 11 C 0.096 3.904 12 H 0.078 0.922 13 C 0.093 3.907 14 H 0.115 0.885 15 C -0.173 4.173 16 N -0.668 5.668 17 C 0.065 3.935 18 C 0.438 3.562 19 O -0.624 6.624 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.084 3.916 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.149 0.851 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.345 0.655 45 H 0.066 0.934 46 H 0.110 0.890 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.111 0.889 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 11.979 -18.355 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 C -0.182 4.182 4 C -0.284 4.284 5 C 0.338 3.662 6 O -0.462 6.462 7 N -0.346 5.346 8 C -0.048 4.048 9 C -0.022 4.022 10 O -0.301 6.301 11 C 0.037 3.963 12 H 0.096 0.904 13 C -0.017 4.017 14 H 0.133 0.867 15 C -0.232 4.232 16 N -0.300 5.300 17 C -0.068 4.068 18 C 0.226 3.774 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.038 4.038 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.167 0.833 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.164 0.836 45 H 0.084 0.916 46 H 0.128 0.872 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.129 0.871 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.367 11.933 -18.019 23.555 hybrid contribution 0.797 -0.870 0.550 1.302 sum -8.570 11.062 -17.469 22.383 Atomic orbital electron populations 1.21417 0.91963 1.04679 1.02576 1.22878 0.96567 0.95552 0.86916 1.21089 1.00346 0.92748 1.03999 1.22508 1.02755 0.91568 1.11576 1.19044 0.84528 0.84336 0.78265 1.90643 1.22201 1.86983 1.46353 1.48184 1.15806 1.05750 1.64816 1.22294 0.97244 0.84747 1.00494 1.22974 0.83283 1.01565 0.94363 1.88005 1.30457 1.29910 1.81704 1.22571 0.91469 0.85009 0.97269 0.90380 1.21718 0.92996 0.99427 0.87552 0.86746 1.22352 0.99827 1.00513 1.00507 1.60152 1.38306 1.18541 1.12970 1.21595 0.93416 1.01506 0.90238 1.20981 0.83938 0.85018 0.87459 1.90508 1.31049 1.47251 1.82204 1.41924 1.19392 1.46743 1.13176 1.19594 1.05129 1.29509 0.91974 0.90568 1.25979 0.94660 0.97840 1.02696 1.69659 1.08610 1.41156 1.36699 0.85045 0.77918 0.78481 0.77247 1.19824 1.19461 1.19851 1.22531 0.80186 1.02215 0.98857 0.90908 0.89908 0.90590 0.88731 0.90039 0.90001 0.83335 0.91533 0.88782 0.86241 0.92244 0.92823 0.90414 0.92461 0.83582 0.91609 0.87186 0.76938 0.91347 0.87093 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.36 71.24 0.67 -2.18 16 2 C -0.02 -0.30 6.03 -17.62 -0.11 -0.40 16 3 C -0.13 -1.28 10.05 71.24 0.72 -0.57 16 4 C -0.26 -5.25 8.90 23.43 0.21 -5.04 16 5 C 0.54 14.00 7.36 86.57 0.64 14.64 16 6 O -0.58 -17.82 13.03 -4.08 -0.05 -17.87 16 7 N -0.61 -14.76 3.02 -821.63 -2.48 -17.24 16 8 C 0.08 1.73 6.66 86.35 0.57 2.30 16 9 C 0.06 1.08 6.99 72.08 0.50 1.58 16 10 O -0.38 -8.98 9.58 -148.98 -1.43 -10.41 16 11 C 0.10 1.92 2.59 30.69 0.08 2.00 16 12 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 13 C 0.09 1.86 2.43 44.92 0.11 1.97 16 14 H 0.11 1.77 7.80 -2.39 -0.02 1.75 16 15 C -0.17 -3.16 9.02 71.98 0.65 -2.51 16 16 N -0.67 -19.37 4.86 -495.56 -2.41 -21.78 16 17 C 0.06 2.03 5.96 85.56 0.51 2.54 16 18 C 0.44 20.27 7.82 87.66 0.69 20.96 16 19 O -0.62 -34.30 15.78 -3.08 -0.05 -34.35 16 20 N -0.57 -28.92 5.29 -306.98 -1.62 -30.55 16 21 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 22 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 25 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 29 C 0.08 1.84 5.73 86.35 0.50 2.34 16 30 H 0.07 1.86 5.00 -2.40 -0.01 1.85 16 31 H 0.08 1.26 8.14 -2.38 -0.02 1.25 16 32 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 35 H 0.08 0.71 8.06 -2.39 -0.02 0.69 16 36 H 0.15 2.31 5.97 -2.91 -0.02 2.29 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 38 H 0.09 2.20 7.06 -2.39 -0.02 2.18 16 39 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 1.15 7.67 -2.39 -0.02 1.13 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 44 H 0.35 11.58 8.17 -89.70 -0.73 10.85 16 45 H 0.07 1.81 7.44 -2.39 -0.02 1.79 16 46 H 0.11 2.94 8.05 -2.39 -0.02 2.92 16 47 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 48 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 49 H 0.11 1.87 5.51 -2.38 -0.01 1.85 16 50 H 0.07 2.11 7.40 -2.39 -0.02 2.09 16 Total: -1.00 -72.71 401.76 0.78 -71.93 By element: Atomic # 1 Polarization: 45.26 SS G_CDS: -0.50 Total: 44.76 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 7.01 Total: 19.48 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -6.23 Total: -118.46 kcal Atomic # 8 Polarization: -61.10 SS G_CDS: -1.53 Total: -62.63 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.71 0.78 -71.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755437475.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.846 kcal (2) G-P(sol) polarization free energy of solvation -72.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds