Wall clock time and date at job start Sat Apr 11 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47442 * 2 1 4 4 C 1.46505 * 120.00050 * 270.00038 * 3 2 1 5 5 C 1.50696 * 109.47079 * 90.00044 * 4 3 2 6 6 H 1.08003 * 120.00096 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00017 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00039 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00202 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47220 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47564 * 119.99509 * 9 7 5 12 12 H 1.48500 * 109.46956 * 239.99852 * 9 7 5 13 13 C 1.34779 * 119.99981 * 89.99847 * 3 2 1 14 14 O 1.21280 * 119.99939 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00173 * 0.02562 * 13 3 2 16 16 N 1.46894 * 109.47465 * 174.57725 * 15 13 3 17 17 C 1.46973 * 111.00153 * 300.68765 * 16 15 13 18 18 C 1.52992 * 109.80532 * 184.81196 * 17 16 15 19 19 C 1.53269 * 109.46589 * 300.87820 * 18 17 16 20 20 C 1.53056 * 108.71370 * 57.05097 * 19 18 17 21 21 H 1.09005 * 107.73264 * 60.63964 * 20 19 18 22 22 O 1.43328 * 109.19227 * 178.91357 * 20 19 18 23 23 C 1.43440 * 115.18675 * 92.36317 * 22 20 19 24 24 C 1.51548 * 111.89250 * 86.81704 * 23 22 20 25 25 N 1.42592 * 118.68479 * 324.32279 * 24 23 22 26 26 C 1.32696 * 124.96242 * 334.85758 * 25 24 23 27 27 O 1.21284 * 118.79079 * 180.71354 * 26 25 24 28 28 C 1.46805 * 111.00099 * 64.37655 * 16 15 13 29 29 H 1.08997 * 108.78187 * 294.28726 * 28 16 15 30 30 H 1.08993 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46751 * 59.99997 * 1 2 3 32 32 H 1.09001 * 109.46900 * 300.00221 * 1 2 3 33 33 H 1.09004 * 109.47093 * 120.00417 * 2 1 3 34 34 H 1.09001 * 109.46900 * 239.99779 * 2 1 3 35 35 H 1.09004 * 109.47142 * 209.99789 * 4 3 2 36 36 H 1.08995 * 109.46910 * 329.99609 * 4 3 2 37 37 H 0.96989 * 120.00384 * 180.02562 * 8 7 5 38 38 H 1.09010 * 109.46886 * 294.57720 * 15 13 3 39 39 H 1.09000 * 109.47610 * 54.57148 * 15 13 3 40 40 H 1.08998 * 109.41461 * 304.92015 * 17 16 15 41 41 H 1.09001 * 109.41476 * 64.70914 * 17 16 15 42 42 H 1.09007 * 109.47025 * 180.87670 * 18 17 16 43 43 H 1.08994 * 109.46953 * 60.87877 * 18 17 16 44 44 H 1.08998 * 109.59018 * 297.28547 * 19 18 17 45 45 H 1.08990 * 109.59739 * 176.82479 * 19 18 17 46 46 H 1.09001 * 108.99462 * 326.19521 * 23 22 20 47 47 H 1.08998 * 108.93598 * 207.39652 * 23 22 20 48 48 H 1.09000 * 107.59367 * 201.98395 * 24 23 22 49 49 H 1.09000 * 107.59313 * 86.65894 * 24 23 22 50 50 H 0.97004 * 117.52204 * 154.83387 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 1.0068 2.7822 -1.7038 6 1 0.1158 2.7247 -1.0962 7 6 0.9951 3.5048 -2.8780 8 7 2.0800 3.5744 -3.6181 9 14 -0.5617 4.3849 -3.4176 10 1 -1.6344 4.1512 -2.4176 11 1 -0.2945 5.8416 -3.5263 12 1 -0.9940 3.8610 -4.7382 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1597 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.4321 2.1573 3.5857 17 6 3.8629 2.4740 3.4734 18 6 4.3182 3.2591 4.7051 19 6 3.5019 4.5514 4.8175 20 6 2.0159 4.1900 4.8772 21 1 1.8603 3.5695 5.7597 22 8 1.2439 5.3905 5.0081 23 6 0.7956 5.9658 3.7729 24 6 -0.5218 5.3710 3.3178 25 7 -0.7691 3.9881 3.5620 26 6 0.1699 3.0628 3.7134 27 8 -0.1677 1.9137 3.9043 28 6 1.6306 3.3851 3.6576 29 1 1.8241 3.9831 2.7671 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.0646 2.7984 -1.1384 36 1 2.5507 1.3451 -2.0283 37 1 2.0719 4.0830 -4.4439 38 1 0.9273 1.0968 2.5734 39 1 2.5496 0.3693 2.4890 40 1 4.4343 1.5486 3.4019 41 1 4.0322 3.0732 2.5788 42 1 5.3759 3.5045 4.6089 43 1 4.1654 2.6539 5.5986 44 1 3.6907 5.1798 3.9472 45 1 3.7852 5.0849 5.7248 46 1 1.5489 5.7889 3.0052 47 1 0.6721 7.0404 3.9075 48 1 -0.6040 5.5356 2.2434 49 1 -1.3215 5.9379 3.7946 50 1 -1.6941 3.7020 3.6225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879719509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:40 Heat of formation + Delta-G solvation = -112.802684 kcal Electronic energy + Delta-G solvation = -33232.231974 eV Core-core repulsion = 29066.263791 eV Total energy + Delta-G solvation = -4165.968183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.56556 -40.76674 -39.35409 -38.40773 -36.95432 -36.01908 -34.94814 -34.09540 -31.91669 -31.58990 -30.29702 -29.75902 -28.15470 -26.19341 -25.02483 -24.31283 -23.84950 -23.42750 -21.22374 -20.92940 -19.98123 -18.75729 -18.68154 -18.42084 -17.96380 -17.63267 -16.95691 -16.86512 -16.43293 -16.26975 -16.06867 -15.81265 -15.29843 -15.16807 -15.07310 -14.82148 -14.64267 -14.41550 -14.23832 -13.94591 -13.90433 -13.83856 -13.45229 -13.33877 -13.04049 -12.84548 -12.69120 -12.58444 -12.55473 -12.32028 -12.21717 -12.08608 -11.88380 -11.78536 -11.63296 -11.43649 -11.21808 -10.94328 -10.66905 -10.58648 -10.07966 -9.47432 -9.18515 -8.24872 -6.38038 1.32022 1.32389 1.38125 1.44624 1.73956 2.05588 2.27071 2.41021 2.53233 2.79804 3.04536 3.31849 3.56005 3.70610 3.78993 3.89157 3.92867 4.01995 4.06292 4.10818 4.21840 4.27503 4.42426 4.50765 4.56352 4.57087 4.61902 4.63503 4.72521 4.74606 4.79542 4.87711 4.93641 4.97412 5.02073 5.05085 5.11807 5.18691 5.36903 5.40433 5.53254 5.56917 5.73612 5.81886 5.85215 6.03880 6.05029 6.23635 6.66286 6.74845 7.06088 7.24486 7.40881 8.82436 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.004755 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.142341 B = 5887.389184 C = 6557.776088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 N -0.599 5.599 4 C 0.262 3.738 5 C -0.528 4.528 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.272 1.272 13 C 0.470 3.530 14 O -0.582 6.582 15 C 0.028 3.972 16 N -0.481 5.481 17 C 0.030 3.970 18 C -0.105 4.105 19 C -0.134 4.134 20 C 0.106 3.894 21 H 0.101 0.899 22 O -0.374 6.374 23 C 0.043 3.957 24 C 0.070 3.930 25 N -0.695 5.695 26 C 0.516 3.484 27 O -0.563 6.563 28 C 0.026 3.974 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.101 0.899 34 H 0.081 0.919 35 H -0.001 1.001 36 H 0.019 0.981 37 H 0.266 0.734 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.052 0.948 45 H 0.097 0.903 46 H 0.044 0.956 47 H 0.143 0.857 48 H 0.059 0.941 49 H 0.114 0.886 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 -0.378 17.264 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.330 5.330 4 C 0.140 3.860 5 C -0.567 4.567 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.786 3.214 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.197 1.197 13 C 0.258 3.742 14 O -0.465 6.465 15 C -0.103 4.103 16 N -0.205 5.205 17 C -0.097 4.097 18 C -0.143 4.143 19 C -0.171 4.171 20 C 0.047 3.953 21 H 0.118 0.882 22 O -0.291 6.291 23 C -0.034 4.034 24 C -0.055 4.055 25 N -0.346 5.346 26 C 0.302 3.698 27 O -0.443 6.443 28 C -0.086 4.086 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.017 0.983 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.116 0.884 46 H 0.062 0.938 47 H 0.160 0.840 48 H 0.077 0.923 49 H 0.132 0.868 50 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.011 -0.394 17.790 17.823 hybrid contribution -0.886 0.865 -2.204 2.528 sum -1.897 0.471 15.586 15.708 Atomic orbital electron populations 1.22107 0.95832 1.02790 1.01064 1.21741 0.94981 0.81377 1.03866 1.48428 1.63137 1.14896 1.06545 1.18745 0.95490 0.91482 0.80256 1.21612 0.97591 1.31282 1.06212 0.93325 1.25790 0.99612 0.97061 0.96522 1.70046 1.29426 1.42480 1.14822 0.85467 0.79317 0.78294 0.78367 1.19383 1.20451 1.19689 1.22455 0.77359 0.87117 0.87280 1.90502 1.48698 1.19693 1.87593 1.22734 1.05836 0.97514 0.84224 1.62285 1.03751 1.14446 1.39996 1.22542 0.86682 1.01274 0.99248 1.21537 1.00045 0.95063 0.97643 1.22104 0.93160 0.98668 1.03216 1.21705 0.92047 0.85134 0.96391 0.88169 1.88118 1.71484 1.39782 1.29764 1.22909 0.93597 1.00171 0.86681 1.21114 1.01347 0.81465 1.01605 1.44331 1.10105 1.08484 1.71649 1.19887 0.88958 0.85363 0.75580 1.90610 1.82948 1.20369 1.50398 1.21699 0.90767 0.94486 1.01617 0.90030 0.88953 0.94003 0.94177 0.88100 0.90039 0.98251 0.96265 0.92484 0.86050 0.85521 0.89181 0.94058 0.88993 0.89683 0.92911 0.88450 0.93783 0.83985 0.92252 0.86763 0.75185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 10.24 71.98 0.74 -4.36 16 2 C 0.10 3.32 6.00 86.38 0.52 3.84 16 3 N -0.60 -25.61 2.46 -826.16 -2.03 -27.64 16 4 C 0.26 13.99 5.20 85.63 0.45 14.44 16 5 C -0.53 -30.00 8.92 25.60 0.23 -29.77 16 6 H 0.05 2.79 7.42 -2.91 -0.02 2.77 16 7 C 0.01 0.51 5.46 84.66 0.46 0.97 16 8 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 9 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.47 19.52 7.06 87.65 0.62 20.14 16 14 O -0.58 -28.02 11.17 -3.03 -0.03 -28.05 16 15 C 0.03 0.92 4.13 85.56 0.35 1.28 16 16 N -0.48 -14.99 4.55 -885.52 -4.03 -19.03 16 17 C 0.03 0.84 5.00 86.29 0.43 1.27 16 18 C -0.11 -2.24 6.08 30.68 0.19 -2.05 16 19 C -0.13 -3.05 5.70 30.70 0.18 -2.87 16 20 C 0.11 2.79 2.52 30.00 0.08 2.87 16 21 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 22 O -0.37 -9.31 10.24 -148.98 -1.53 -10.84 16 23 C 0.04 0.96 6.22 71.51 0.44 1.41 16 24 C 0.07 1.53 6.64 86.62 0.58 2.11 16 25 N -0.70 -18.66 5.23 -477.61 -2.50 -21.16 16 26 C 0.52 17.04 6.51 87.66 0.57 17.61 16 27 O -0.56 -20.82 14.68 -3.04 -0.04 -20.86 16 28 C 0.03 0.84 0.93 43.26 0.04 0.88 16 29 H 0.08 3.14 3.90 -2.39 -0.01 3.13 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.59 7.26 -2.38 -0.02 1.57 16 32 H 0.04 1.35 7.39 -2.39 -0.02 1.33 16 33 H 0.10 2.52 6.29 -2.38 -0.02 2.51 16 34 H 0.08 2.53 7.89 -2.39 -0.02 2.51 16 35 H 0.00 -0.04 7.42 -2.38 -0.02 -0.05 16 36 H 0.02 1.06 7.89 -2.39 -0.02 1.04 16 37 H 0.27 14.92 8.31 -92.72 -0.77 14.14 16 38 H 0.12 4.34 4.48 -2.38 -0.01 4.33 16 39 H 0.13 3.42 7.11 -2.39 -0.02 3.40 16 40 H 0.09 2.23 8.13 -2.39 -0.02 2.21 16 41 H 0.04 1.48 5.61 -2.39 -0.01 1.46 16 42 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.04 1.21 6.50 -2.39 -0.02 1.19 16 47 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.41 9.55 8.77 -92.71 -0.81 8.73 16 Total: -1.00 -74.80 376.75 -1.84 -76.64 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.15 Total: 31.95 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: 5.86 Total: 27.74 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -8.27 Total: -123.01 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: -1.60 Total: -59.75 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -74.80 -1.84 -76.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879719509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.162 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds