Wall clock time and date at job start Sat Apr 11 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47349 * 2 1 4 4 C 1.50694 * 109.47328 * 120.00231 * 2 1 3 5 5 O 1.21284 * 120.00204 * 103.76513 * 4 2 1 6 6 N 1.34782 * 120.00021 * 283.76831 * 4 2 1 7 7 C 1.46502 * 119.99670 * 0.02562 * 6 4 2 8 8 C 1.46496 * 120.00049 * 179.97438 * 6 4 2 9 9 C 1.50705 * 109.46752 * 90.00143 * 8 6 4 10 10 H 1.08004 * 120.00205 * 0.02562 * 9 8 6 11 11 C 1.37875 * 119.99997 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99953 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00028 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47371 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47250 * 120.00661 * 13 11 9 16 16 H 1.48507 * 109.47407 * 240.00643 * 13 11 9 17 17 N 1.46906 * 109.46982 * 240.00176 * 2 1 3 18 18 C 1.46849 * 110.99804 * 312.33660 * 17 2 1 19 19 C 1.53039 * 109.51965 * 185.84029 * 18 17 2 20 20 C 1.53116 * 109.27920 * 300.82144 * 19 18 17 21 21 C 1.52998 * 109.52492 * 177.56323 * 20 19 18 22 22 H 1.08997 * 110.61688 * 298.75794 * 21 20 19 23 23 C 1.54091 * 110.56722 * 175.93751 * 21 20 19 24 24 O 1.45702 * 104.00684 * 241.42686 * 23 21 20 25 25 C 1.33775 * 109.47716 * 359.97438 * 24 23 21 26 26 O 1.21508 * 123.06900 * 180.02562 * 25 24 23 27 27 N 1.34000 * 113.85549 * 0.02562 * 25 24 23 28 28 C 1.53120 * 109.21345 * 57.62362 * 20 19 18 29 29 C 1.46843 * 111.00056 * 76.54926 * 17 2 1 30 30 H 1.09001 * 109.47199 * 300.00231 * 1 2 3 31 31 H 1.09001 * 109.47385 * 59.99735 * 1 2 3 32 32 H 1.09004 * 109.47349 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46929 * 90.00479 * 7 6 4 34 34 H 1.08998 * 109.46708 * 209.99424 * 7 6 4 35 35 H 1.08994 * 109.47456 * 329.99730 * 7 6 4 36 36 H 1.08996 * 109.47650 * 209.99833 * 8 6 4 37 37 H 1.08995 * 109.47489 * 330.00832 * 8 6 4 38 38 H 0.97009 * 119.99782 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.45959 * 65.82709 * 18 17 2 40 40 H 1.08997 * 109.45369 * 305.84815 * 18 17 2 41 41 H 1.09002 * 109.50099 * 180.88172 * 19 18 17 42 42 H 1.08998 * 109.50263 * 60.76440 * 19 18 17 43 43 H 1.09008 * 109.52314 * 297.69141 * 20 19 18 44 44 H 1.08994 * 110.52119 * 122.79495 * 23 21 20 45 45 H 1.09000 * 110.64020 * 0.11279 * 23 21 20 46 46 H 0.97003 * 125.55505 * 179.72830 * 27 25 24 47 47 H 1.09001 * 109.50070 * 62.32033 * 28 20 19 48 48 H 1.09001 * 109.49980 * 182.43848 * 28 20 19 49 49 H 1.09006 * 109.46095 * 294.17399 * 29 17 2 50 50 H 1.08996 * 109.46599 * 54.15390 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.4701 -1.8381 1.1433 6 7 1.9951 -0.0926 2.4277 7 6 1.4657 1.2693 2.5330 8 6 2.4829 -0.7835 3.6239 9 6 3.9515 -0.4979 3.8050 10 1 4.4696 0.1352 3.0998 11 6 4.6336 -1.0440 4.8714 12 7 4.0028 -1.8146 5.7305 13 14 6.4539 -0.6895 5.0963 14 1 6.9239 0.1987 4.0030 15 1 6.6700 -0.0206 6.4045 16 1 7.2147 -1.9644 5.0605 17 7 2.0196 -0.6925 -1.1995 18 6 1.3245 -1.9721 -1.3890 19 6 1.9577 -2.7298 -2.5582 20 6 1.8550 -1.8789 -3.8270 21 6 2.5402 -2.6049 -4.9864 22 1 3.5978 -2.7585 -4.7716 23 6 2.3634 -1.8169 -6.2987 24 8 1.6258 -2.7301 -7.1618 25 6 1.3904 -3.8718 -6.5055 26 8 0.7907 -4.8074 -6.9968 27 7 1.8763 -3.8893 -5.2569 28 6 2.5436 -0.5323 -3.5879 29 6 1.8944 0.1610 -2.3879 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.3935 1.2285 2.7253 34 1 1.9620 1.7897 3.3521 35 1 1.6475 1.8030 1.6002 36 1 1.9339 -0.4304 4.4968 37 1 2.3330 -1.8570 3.5100 38 1 4.4828 -2.1991 6.4806 39 1 0.2724 -1.7854 -1.6044 40 1 1.4090 -2.5691 -0.4810 41 1 1.4315 -3.6725 -2.7086 42 1 3.0064 -2.9289 -2.3375 43 1 0.8054 -1.7131 -4.0704 44 1 3.3333 -1.5784 -6.7349 45 1 1.7890 -0.9067 -6.1259 46 1 1.7993 -4.6271 -4.6319 47 1 3.6017 -0.6959 -3.3839 48 1 2.4356 0.0939 -4.4735 49 1 0.8396 0.3376 -2.5986 50 1 2.3927 1.1131 -2.2054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932783802.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:57 Heat of formation + Delta-G solvation = -97.058133 kcal Electronic energy + Delta-G solvation = -30762.876043 eV Core-core repulsion = 26597.590595 eV Total energy + Delta-G solvation = -4165.285448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.01935 -40.08353 -38.44963 -37.40957 -35.91814 -34.80209 -33.82536 -32.60091 -31.11420 -30.65319 -28.68527 -27.67501 -26.06345 -25.42336 -24.03069 -23.55855 -22.59108 -22.22763 -21.39608 -19.84543 -18.47832 -18.33157 -17.44855 -16.90080 -16.67213 -16.38662 -16.08703 -15.22294 -15.12097 -14.95362 -14.71220 -14.59592 -14.52134 -14.16609 -14.06204 -13.89104 -13.50354 -13.37329 -13.14136 -12.76199 -12.59834 -12.32708 -12.21870 -12.08770 -11.89745 -11.65709 -11.58210 -11.31905 -11.17744 -11.07583 -11.01980 -10.98191 -10.84858 -10.67867 -10.58382 -10.49732 -10.15809 -9.67458 -9.60692 -8.86173 -8.45367 -8.13409 -7.64078 -6.05856 -4.10259 2.37315 2.44361 3.17807 3.28363 3.33217 3.36825 3.42057 3.64526 3.66595 4.04624 4.16572 4.32477 4.44076 4.56950 4.61439 4.72281 4.86352 4.91275 5.00938 5.08109 5.11311 5.12254 5.21600 5.26770 5.28844 5.38373 5.43888 5.50736 5.53878 5.60346 5.67846 5.71882 5.80499 5.89167 5.90267 5.99103 6.14029 6.21828 6.23620 6.44492 6.92060 6.92981 7.11193 7.16096 7.42350 7.53458 7.78233 7.91008 8.22069 8.41167 8.90055 9.11171 9.55040 11.02240 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.002411 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.680054 B =11612.651027 C =12215.948142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.063 3.937 3 H 0.099 0.901 4 C 0.514 3.486 5 O -0.526 6.526 6 N -0.603 5.603 7 C 0.083 3.917 8 C 0.246 3.754 9 C -0.523 4.523 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.513 5.513 18 C 0.050 3.950 19 C -0.108 4.108 20 C -0.098 4.098 21 C 0.100 3.900 22 H 0.107 0.893 23 C 0.043 3.957 24 O -0.330 6.330 25 C 0.645 3.355 26 O -0.528 6.528 27 N -0.728 5.728 28 C -0.111 4.111 29 C 0.056 3.944 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.262 0.738 39 H 0.029 0.971 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.436 0.564 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.033 0.967 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 6.570 -19.729 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.049 4.049 3 H 0.117 0.883 4 C 0.300 3.700 5 O -0.403 6.403 6 N -0.335 5.335 7 C -0.062 4.062 8 C 0.127 3.873 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.237 5.237 18 C -0.077 4.077 19 C -0.146 4.146 20 C -0.118 4.118 21 C -0.006 4.006 22 H 0.125 0.875 23 C -0.032 4.032 24 O -0.241 6.241 25 C 0.397 3.603 26 O -0.413 6.413 27 N -0.401 5.401 28 C -0.149 4.149 29 C -0.073 4.073 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.122 0.878 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.280 0.720 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.051 0.949 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.621 5.465 -20.147 21.619 hybrid contribution 0.232 0.309 0.672 0.775 sum -5.389 5.774 -19.475 21.015 Atomic orbital electron populations 1.22369 0.95681 1.03126 1.02692 1.21686 0.93947 0.98623 0.90639 0.88323 1.20016 0.79356 0.86848 0.83804 1.90606 1.45802 1.18924 1.84935 1.48134 1.61226 1.14958 1.09226 1.21684 0.97821 0.84547 1.02113 1.19271 0.94165 0.93668 0.80165 1.21464 0.94506 1.30324 1.09887 0.92420 1.24940 0.98543 0.94954 0.95749 1.69945 1.36345 1.32681 1.14522 0.86448 0.85054 0.78151 0.77791 1.19792 1.21019 1.20885 1.61744 1.57002 1.03780 1.01182 1.22288 0.94172 0.91033 1.00214 1.21595 1.02838 0.97386 0.92790 1.21668 0.99932 0.95854 0.94304 1.22510 0.99147 0.83606 0.95306 0.87537 1.24489 0.98283 0.92853 0.87612 1.87270 1.70757 1.25942 1.40086 1.18536 0.78455 0.82420 0.80854 1.91083 1.44815 1.34178 1.71248 1.46089 1.59948 1.18891 1.15125 1.21642 1.01294 0.94617 0.97374 1.22075 0.98678 0.96372 0.90128 0.91173 0.92129 0.91608 0.93810 0.90775 0.92555 0.95112 0.93906 0.92797 0.95282 0.87835 0.91785 0.90290 0.90572 0.87421 0.87349 0.72002 0.90138 0.91270 0.94917 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 8.20 37.16 0.30 -1.70 16 2 C 0.06 0.86 1.93 -68.87 -0.13 0.73 16 3 H 0.10 1.21 6.23 -51.93 -0.32 0.89 16 4 C 0.51 10.05 6.84 -10.99 -0.08 9.97 16 5 O -0.53 -12.47 13.86 5.55 0.08 -12.39 16 6 N -0.60 -12.21 2.86 -182.96 -0.52 -12.73 16 7 C 0.08 1.23 9.36 59.85 0.56 1.79 16 8 C 0.25 6.30 5.16 -5.19 -0.03 6.27 16 9 C -0.52 -14.59 9.39 -34.44 -0.32 -14.92 16 10 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 12 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 13 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 N -0.51 -6.49 4.36 -228.08 -0.99 -7.48 16 18 C 0.05 0.62 4.17 -3.83 -0.02 0.60 16 19 C -0.11 -1.02 5.20 -26.65 -0.14 -1.16 16 20 C -0.10 -0.66 1.88 -90.50 -0.17 -0.83 16 21 C 0.10 0.58 3.27 -67.04 -0.22 0.36 16 22 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 23 C 0.04 0.22 7.39 37.73 0.28 0.50 16 24 O -0.33 -3.28 11.09 -37.84 -0.42 -3.70 16 25 C 0.64 7.38 9.16 53.71 0.49 7.87 16 26 O -0.53 -8.29 18.04 -19.11 -0.34 -8.63 16 27 N -0.73 -5.77 5.71 -58.23 -0.33 -6.11 16 28 C -0.11 -0.72 5.14 -26.65 -0.14 -0.85 16 29 C 0.06 0.49 5.22 -3.83 -0.02 0.47 16 30 H 0.07 0.75 6.47 -51.93 -0.34 0.42 16 31 H 0.06 0.55 7.09 -51.93 -0.37 0.18 16 32 H 0.06 0.80 6.45 -51.93 -0.33 0.47 16 33 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 34 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 35 H 0.06 0.67 6.02 -51.93 -0.31 0.36 16 36 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.03 0.33 6.59 -51.93 -0.34 -0.02 16 40 H 0.10 1.67 5.87 -51.93 -0.30 1.36 16 41 H 0.06 0.54 7.29 -51.93 -0.38 0.16 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.11 0.39 6.74 -51.93 -0.35 0.04 16 46 H 0.44 3.04 8.25 -40.82 -0.34 2.71 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.28 6.88 -51.93 -0.36 -0.08 16 49 H 0.03 0.26 7.13 -51.93 -0.37 -0.11 16 50 H 0.08 0.64 7.95 -51.93 -0.41 0.22 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -36.23 384.62 -8.54 -44.78 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.80 Total: -1.22 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 0.28 Total: 10.70 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -1.11 Total: -51.94 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.69 Total: -24.72 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.23 -8.54 -44.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932783802.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.281 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds