Wall clock time and date at job start Sat Apr 11 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47349 * 2 1 4 4 C 1.50694 * 109.47328 * 120.00231 * 2 1 3 5 5 O 1.21284 * 120.00204 * 103.76513 * 4 2 1 6 6 N 1.34782 * 120.00021 * 283.76831 * 4 2 1 7 7 C 1.46502 * 119.99670 * 0.02562 * 6 4 2 8 8 C 1.46496 * 120.00049 * 179.97438 * 6 4 2 9 9 C 1.50705 * 109.46752 * 90.00143 * 8 6 4 10 10 H 1.08004 * 120.00205 * 0.02562 * 9 8 6 11 11 C 1.37875 * 119.99997 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99953 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00028 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47371 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47250 * 120.00661 * 13 11 9 16 16 H 1.48507 * 109.47407 * 240.00643 * 13 11 9 17 17 N 1.46906 * 109.46982 * 240.00176 * 2 1 3 18 18 C 1.46849 * 110.99804 * 312.33660 * 17 2 1 19 19 C 1.53039 * 109.51965 * 185.84029 * 18 17 2 20 20 C 1.53116 * 109.27920 * 300.82144 * 19 18 17 21 21 C 1.52998 * 109.52492 * 177.56323 * 20 19 18 22 22 H 1.08997 * 110.61688 * 298.75794 * 21 20 19 23 23 C 1.54091 * 110.56722 * 175.93751 * 21 20 19 24 24 O 1.45702 * 104.00684 * 241.42686 * 23 21 20 25 25 C 1.33775 * 109.47716 * 359.97438 * 24 23 21 26 26 O 1.21508 * 123.06900 * 180.02562 * 25 24 23 27 27 N 1.34000 * 113.85549 * 0.02562 * 25 24 23 28 28 C 1.53120 * 109.21345 * 57.62362 * 20 19 18 29 29 C 1.46843 * 111.00056 * 76.54926 * 17 2 1 30 30 H 1.09001 * 109.47199 * 300.00231 * 1 2 3 31 31 H 1.09001 * 109.47385 * 59.99735 * 1 2 3 32 32 H 1.09004 * 109.47349 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46929 * 90.00479 * 7 6 4 34 34 H 1.08998 * 109.46708 * 209.99424 * 7 6 4 35 35 H 1.08994 * 109.47456 * 329.99730 * 7 6 4 36 36 H 1.08996 * 109.47650 * 209.99833 * 8 6 4 37 37 H 1.08995 * 109.47489 * 330.00832 * 8 6 4 38 38 H 0.97009 * 119.99782 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.45959 * 65.82709 * 18 17 2 40 40 H 1.08997 * 109.45369 * 305.84815 * 18 17 2 41 41 H 1.09002 * 109.50099 * 180.88172 * 19 18 17 42 42 H 1.08998 * 109.50263 * 60.76440 * 19 18 17 43 43 H 1.09008 * 109.52314 * 297.69141 * 20 19 18 44 44 H 1.08994 * 110.52119 * 122.79495 * 23 21 20 45 45 H 1.09000 * 110.64020 * 0.11279 * 23 21 20 46 46 H 0.97003 * 125.55505 * 179.72830 * 27 25 24 47 47 H 1.09001 * 109.50070 * 62.32033 * 28 20 19 48 48 H 1.09001 * 109.49980 * 182.43848 * 28 20 19 49 49 H 1.09006 * 109.46095 * 294.17399 * 29 17 2 50 50 H 1.08996 * 109.46599 * 54.15390 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.4701 -1.8381 1.1433 6 7 1.9951 -0.0926 2.4277 7 6 1.4657 1.2693 2.5330 8 6 2.4829 -0.7835 3.6239 9 6 3.9515 -0.4979 3.8050 10 1 4.4696 0.1352 3.0998 11 6 4.6336 -1.0440 4.8714 12 7 4.0028 -1.8146 5.7305 13 14 6.4539 -0.6895 5.0963 14 1 6.9239 0.1987 4.0030 15 1 6.6700 -0.0206 6.4045 16 1 7.2147 -1.9644 5.0605 17 7 2.0196 -0.6925 -1.1995 18 6 1.3245 -1.9721 -1.3890 19 6 1.9577 -2.7298 -2.5582 20 6 1.8550 -1.8789 -3.8270 21 6 2.5402 -2.6049 -4.9864 22 1 3.5978 -2.7585 -4.7716 23 6 2.3634 -1.8169 -6.2987 24 8 1.6258 -2.7301 -7.1618 25 6 1.3904 -3.8718 -6.5055 26 8 0.7907 -4.8074 -6.9968 27 7 1.8763 -3.8893 -5.2569 28 6 2.5436 -0.5323 -3.5879 29 6 1.8944 0.1610 -2.3879 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.3935 1.2285 2.7253 34 1 1.9620 1.7897 3.3521 35 1 1.6475 1.8030 1.6002 36 1 1.9339 -0.4304 4.4968 37 1 2.3330 -1.8570 3.5100 38 1 4.4828 -2.1991 6.4806 39 1 0.2724 -1.7854 -1.6044 40 1 1.4090 -2.5691 -0.4810 41 1 1.4315 -3.6725 -2.7086 42 1 3.0064 -2.9289 -2.3375 43 1 0.8054 -1.7131 -4.0704 44 1 3.3333 -1.5784 -6.7349 45 1 1.7890 -0.9067 -6.1259 46 1 1.7993 -4.6271 -4.6319 47 1 3.6017 -0.6959 -3.3839 48 1 2.4356 0.0939 -4.4735 49 1 0.8396 0.3376 -2.5986 50 1 2.3927 1.1131 -2.2054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932783802.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:56 Heat of formation + Delta-G solvation = -125.927804 kcal Electronic energy + Delta-G solvation = -30764.127926 eV Core-core repulsion = 26597.590595 eV Total energy + Delta-G solvation = -4166.537330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70185 -41.24998 -39.56626 -38.34012 -36.78253 -36.43081 -34.90095 -34.39716 -31.87934 -31.55307 -29.80556 -29.04775 -27.40456 -26.41244 -25.41650 -24.29835 -23.77351 -23.04914 -22.30167 -20.60490 -19.77176 -19.11608 -18.68291 -18.12262 -17.85412 -17.61534 -17.31897 -16.62822 -16.22733 -15.97101 -15.89804 -15.62117 -15.38410 -15.20617 -14.88944 -14.72458 -14.51653 -14.34558 -14.16881 -13.95616 -13.71931 -13.50462 -13.40263 -13.18686 -13.03698 -12.94809 -12.84939 -12.62200 -12.55966 -12.45739 -12.18730 -11.99326 -11.94399 -11.84389 -11.65652 -11.62439 -11.36324 -11.26805 -10.64537 -10.39466 -10.22904 -9.37403 -9.06973 -8.21557 -6.36189 1.36509 1.38913 1.50824 1.60489 1.72520 1.91993 2.30323 2.42825 2.63706 3.06383 3.08018 3.18519 3.55988 3.72148 3.77588 3.97268 4.01288 4.07140 4.13536 4.28296 4.37485 4.38575 4.45178 4.45390 4.61231 4.63492 4.65444 4.69742 4.76370 4.79993 4.86288 4.92298 4.95827 5.02114 5.05743 5.11306 5.18395 5.24579 5.24955 5.27158 5.50805 5.58677 5.76087 5.87201 6.07963 6.09460 6.23886 6.32753 6.72745 6.87353 7.00352 7.30722 7.59252 8.85397 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.002411 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.680054 B =11612.651027 C =12215.948142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.122 0.878 4 C 0.501 3.499 5 O -0.581 6.581 6 N -0.613 5.613 7 C 0.078 3.922 8 C 0.261 3.739 9 C -0.536 4.536 10 H 0.052 0.948 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.968 3.032 14 H -0.265 1.265 15 H -0.270 1.270 16 H -0.283 1.283 17 N -0.536 5.536 18 C 0.055 3.945 19 C -0.105 4.105 20 C -0.086 4.086 21 C 0.103 3.897 22 H 0.123 0.877 23 C 0.040 3.960 24 O -0.345 6.345 25 C 0.643 3.357 26 O -0.583 6.583 27 N -0.718 5.718 28 C -0.107 4.107 29 C 0.052 3.948 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.021 0.979 37 H -0.005 1.005 38 H 0.266 0.734 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.137 0.863 45 H 0.133 0.867 46 H 0.439 0.561 47 H 0.074 0.926 48 H 0.107 0.893 49 H 0.048 0.952 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.468 9.864 -21.861 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.036 4.036 3 H 0.140 0.860 4 C 0.290 3.710 5 O -0.461 6.461 6 N -0.345 5.345 7 C -0.064 4.064 8 C 0.140 3.860 9 C -0.575 4.575 10 H 0.071 0.929 11 C -0.193 4.193 12 N -0.571 5.571 13 Si 0.792 3.208 14 H -0.190 1.190 15 H -0.195 1.195 16 H -0.209 1.209 17 N -0.260 5.260 18 C -0.073 4.073 19 C -0.143 4.143 20 C -0.105 4.105 21 C -0.002 4.002 22 H 0.140 0.860 23 C -0.034 4.034 24 O -0.255 6.255 25 C 0.396 3.604 26 O -0.472 6.472 27 N -0.389 5.389 28 C -0.145 4.145 29 C -0.075 4.075 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.039 0.961 37 H 0.013 0.987 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.155 0.845 45 H 0.151 0.849 46 H 0.283 0.717 47 H 0.092 0.908 48 H 0.125 0.875 49 H 0.066 0.934 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.065 8.841 -22.277 24.497 hybrid contribution 0.049 -0.696 1.394 1.559 sum -5.016 8.145 -20.883 22.970 Atomic orbital electron populations 1.22321 0.93461 1.02627 1.04606 1.21585 0.95426 0.98412 0.88140 0.86042 1.21255 0.78166 0.86488 0.85116 1.90583 1.48075 1.21511 1.85903 1.48168 1.61348 1.16896 1.08065 1.21969 0.98966 0.81666 1.03819 1.18694 0.93545 0.91523 0.82272 1.21716 0.95678 1.30269 1.09843 0.92937 1.25872 1.03441 0.94611 0.95413 1.70066 1.38329 1.33559 1.15107 0.85367 0.79011 0.78016 0.78406 1.18962 1.19477 1.20884 1.61685 1.57547 1.04439 1.02362 1.22108 0.95174 0.90960 0.99037 1.21535 1.01446 0.97921 0.93390 1.21548 1.00429 0.95739 0.92807 1.22661 0.99565 0.82479 0.95514 0.85979 1.24926 0.99762 0.92358 0.86305 1.87239 1.71240 1.25880 1.41162 1.18653 0.78015 0.82290 0.81399 1.91031 1.47339 1.36307 1.72564 1.46110 1.58943 1.19802 1.14044 1.21676 1.00484 0.94444 0.97900 1.22256 1.00093 0.96234 0.88945 0.90552 0.88795 0.93370 0.91231 0.91732 0.88822 0.96134 0.98717 0.92486 0.94180 0.92777 0.91482 0.92000 0.90198 0.84522 0.84941 0.71713 0.90772 0.87485 0.93359 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 8.20 71.98 0.59 -2.80 16 2 C 0.08 1.95 1.93 44.16 0.09 2.04 16 3 H 0.12 2.54 6.23 -2.38 -0.01 2.53 16 4 C 0.50 20.05 6.84 87.65 0.60 20.65 16 5 O -0.58 -29.32 13.86 -3.04 -0.04 -29.36 16 6 N -0.61 -25.30 2.86 -851.15 -2.43 -27.73 16 7 C 0.08 2.19 9.36 127.77 1.20 3.39 16 8 C 0.26 14.06 5.16 85.64 0.44 14.50 16 9 C -0.54 -30.84 9.39 25.60 0.24 -30.60 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 11 C 0.01 0.30 5.46 84.65 0.46 0.76 16 12 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 13 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 N -0.54 -12.72 4.36 -875.50 -3.82 -16.54 16 18 C 0.05 1.35 4.17 86.33 0.36 1.71 16 19 C -0.10 -1.92 5.20 30.65 0.16 -1.76 16 20 C -0.09 -0.90 1.88 -10.72 -0.02 -0.92 16 21 C 0.10 0.89 3.27 45.25 0.15 1.04 16 22 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 23 C 0.04 0.25 7.39 72.35 0.53 0.79 16 24 O -0.35 -6.14 11.09 -47.35 -0.53 -6.66 16 25 C 0.64 14.24 9.16 129.91 1.19 15.43 16 26 O -0.58 -18.71 18.04 19.66 0.35 -18.35 16 27 N -0.72 -10.48 5.71 -569.86 -3.26 -13.73 16 28 C -0.11 -0.93 5.14 30.65 0.16 -0.77 16 29 C 0.05 0.70 5.22 86.33 0.45 1.15 16 30 H 0.08 1.42 6.47 -2.39 -0.02 1.40 16 31 H 0.09 1.27 7.09 -2.39 -0.02 1.25 16 32 H 0.05 1.13 6.45 -2.38 -0.02 1.12 16 33 H 0.07 1.60 7.45 -2.39 -0.02 1.58 16 34 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 35 H 0.09 1.92 6.02 -2.39 -0.01 1.90 16 36 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 37 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 38 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 39 H 0.04 0.87 6.59 -2.39 -0.02 0.85 16 40 H 0.05 1.88 5.87 -2.39 -0.01 1.87 16 41 H 0.07 1.14 7.29 -2.39 -0.02 1.12 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.13 0.22 6.74 -2.39 -0.02 0.21 16 46 H 0.44 5.93 8.25 -92.71 -0.77 5.16 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.11 0.19 6.88 -2.39 -0.02 0.17 16 49 H 0.05 0.53 7.13 -2.38 -0.02 0.51 16 50 H 0.09 1.03 7.95 -2.39 -0.02 1.01 16 Total: -1.00 -86.57 384.62 -0.61 -87.19 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.20 Total: 9.93 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 6.59 Total: 24.60 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -9.22 Total: -114.16 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -0.21 Total: -54.38 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -86.57 -0.61 -87.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932783802.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.739 kcal (2) G-P(sol) polarization free energy of solvation -86.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds