Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46696 * 2 1 4 4 C 1.34772 * 120.00179 * 90.00051 * 3 2 1 5 5 O 1.21282 * 120.00058 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.99713 * 0.02562 * 4 3 2 7 7 H 1.09002 * 110.86014 * 56.20979 * 6 4 3 8 8 C 1.54628 * 110.96765 * 292.37467 * 6 4 3 9 9 C 1.51277 * 104.13300 * 216.86522 * 8 6 4 10 10 O 1.21280 * 124.94177 * 196.51289 * 9 8 6 11 11 N 1.34416 * 110.11923 * 16.65501 * 9 8 6 12 12 C 1.46500 * 124.35500 * 180.24988 * 11 9 8 13 13 C 1.52997 * 109.46970 * 269.70075 * 12 11 9 14 14 O 1.42898 * 109.47417 * 64.99798 * 13 12 11 15 15 C 1.42898 * 114.00273 * 180.02562 * 14 13 12 16 16 C 1.46766 * 111.29987 * 359.97438 * 11 9 8 17 17 C 1.46501 * 119.99744 * 269.99936 * 3 2 1 18 18 C 1.53944 * 113.74538 * 38.74541 * 17 3 2 19 19 N 1.47814 * 86.03377 * 222.08348 * 18 17 3 20 20 C 1.36944 * 134.45097 * 204.64275 * 19 18 17 21 21 H 1.08003 * 119.99760 * 173.34861 * 20 19 18 22 22 C 1.38807 * 120.00211 * 353.34936 * 20 19 18 23 23 N 1.31618 * 120.00035 * 5.05850 * 22 20 19 24 24 Si 1.86796 * 120.00014 * 185.06541 * 22 20 19 25 25 H 1.48505 * 109.47555 * 94.98423 * 24 22 20 26 26 H 1.48497 * 109.47188 * 214.98489 * 24 22 20 27 27 H 1.48504 * 109.47080 * 334.98411 * 24 22 20 28 28 C 1.47577 * 91.05643 * 24.54688 * 19 18 17 29 29 H 1.09002 * 109.46666 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47126 * 299.99709 * 1 2 3 31 31 H 1.09003 * 109.47154 * 60.00180 * 1 2 3 32 32 H 1.08999 * 109.47126 * 240.00291 * 2 1 3 33 33 H 1.08991 * 109.47565 * 119.99906 * 2 1 3 34 34 H 1.08991 * 110.48908 * 335.76443 * 8 6 4 35 35 H 1.09005 * 110.48485 * 98.40700 * 8 6 4 36 36 H 1.08997 * 109.47764 * 149.69677 * 12 11 9 37 37 H 1.08998 * 109.46638 * 29.69661 * 12 11 9 38 38 H 1.09005 * 109.47271 * 184.99710 * 13 12 11 39 39 H 1.09003 * 109.47191 * 304.99183 * 13 12 11 40 40 H 1.09004 * 109.47368 * 59.99832 * 15 14 13 41 41 H 1.09002 * 109.47442 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.47118 * 299.99951 * 15 14 13 43 43 H 1.09008 * 110.24427 * 102.25286 * 16 11 9 44 44 H 1.08992 * 110.25044 * 224.16397 * 16 11 9 45 45 H 1.08999 * 112.94254 * 170.33702 * 17 3 2 46 46 H 1.09001 * 113.76577 * 336.34499 * 18 17 3 47 47 H 1.08999 * 113.77108 * 107.74478 * 18 17 3 48 48 H 0.96996 * 119.99989 * 179.97438 * 23 22 20 49 49 H 1.08994 * 113.77170 * 221.15560 * 28 19 18 50 50 H 1.09004 * 113.87114 * 89.76525 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0167 1.1671 5 8 2.6475 3.1600 1.1671 6 6 1.9923 1.3060 2.4722 7 1 2.5626 0.3786 2.5249 8 6 0.4828 1.0407 2.6769 9 6 0.2711 1.2379 4.1618 10 8 -0.6980 0.8547 4.7822 11 7 1.3118 1.9023 4.6930 12 6 1.4311 2.2553 6.1098 13 6 0.8104 3.6336 6.3460 14 8 -0.5939 3.5742 6.0881 15 6 -1.2732 4.8167 6.2797 16 6 2.3165 2.2231 3.6723 17 6 2.2624 2.0719 -1.2688 18 6 1.2170 1.7606 -2.3551 19 7 2.3608 1.6803 -3.2879 20 6 2.5093 1.8429 -4.6395 21 1 3.4956 1.8336 -5.0794 22 6 1.3921 2.0197 -5.4442 23 7 0.1993 2.1309 -4.8990 24 14 1.5816 2.0998 -7.3008 25 1 1.3477 0.7529 -7.8809 26 1 0.5930 3.0573 -7.8584 27 1 2.9548 2.5529 -7.6392 28 6 3.2783 1.3570 -2.1781 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 -0.1109 1.7538 2.1050 35 1 0.2328 0.0189 2.3911 36 1 2.4838 2.2778 6.3914 37 1 0.9092 1.5134 6.7141 38 1 0.9774 3.9349 7.3802 39 1 1.2723 4.3596 5.6769 40 1 -0.8544 5.5670 5.6089 41 1 -2.3338 4.6881 6.0636 42 1 -1.1494 5.1430 7.3123 43 1 2.2358 3.2700 3.3795 44 1 3.3175 2.0136 4.0493 45 1 2.4599 3.1363 -1.1420 46 1 0.7014 0.8113 -2.2094 47 1 0.5378 2.5878 -2.5611 48 1 -0.5812 2.2548 -5.4613 49 1 4.2417 1.8627 -2.2431 50 1 3.3709 0.2893 -1.9791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950458493.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -33.399596 kcal Electronic energy + Delta-G solvation = -30931.927279 eV Core-core repulsion = 26769.402273 eV Total energy + Delta-G solvation = -4162.525006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08373 -39.62105 -38.01722 -37.73673 -36.18141 -35.25660 -33.43203 -32.05780 -30.35998 -29.54389 -27.93406 -27.47034 -26.52871 -24.92075 -24.42045 -23.50615 -22.91327 -22.27392 -19.82956 -19.41243 -18.40771 -17.71136 -17.14193 -16.91442 -16.72424 -16.32522 -16.05322 -15.51326 -15.38500 -14.95155 -14.87408 -14.69252 -14.00948 -13.88392 -13.75658 -13.55400 -13.24566 -13.11900 -12.97920 -12.63113 -12.54493 -12.27665 -12.18876 -12.02295 -11.82605 -11.65991 -11.50637 -11.43343 -11.40541 -11.12067 -10.88082 -10.80483 -10.61718 -10.30817 -10.09355 -9.97812 -9.83206 -9.60081 -9.49451 -8.85912 -8.82630 -8.24858 -6.93452 -5.84107 -3.15928 2.54402 2.66142 2.75160 3.16015 3.36765 3.42229 3.44017 3.54232 4.07819 4.19980 4.42277 4.50965 4.70731 4.73854 4.79403 4.87101 4.98399 5.05599 5.08848 5.13395 5.14116 5.16042 5.26554 5.31146 5.37671 5.44287 5.47295 5.51239 5.54366 5.57161 5.62328 5.75237 5.86775 5.95404 6.03251 6.15468 6.32580 6.37255 6.43591 6.55978 6.78191 6.90761 6.98955 7.14884 7.28497 7.47784 7.68451 7.90966 8.11571 8.31201 8.98248 9.64341 10.51640 11.33589 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.002410 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.247320 B =11617.257766 C =11727.347017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.102 3.898 3 N -0.589 5.589 4 C 0.523 3.477 5 O -0.542 6.542 6 C -0.122 4.122 7 H 0.115 0.885 8 C -0.148 4.148 9 C 0.524 3.476 10 O -0.517 6.517 11 N -0.620 5.620 12 C 0.130 3.870 13 C 0.039 3.961 14 O -0.376 6.376 15 C 0.032 3.968 16 C 0.117 3.883 17 C 0.089 3.911 18 C 0.156 3.844 19 N -0.606 5.606 20 C -0.224 4.224 21 H 0.082 0.918 22 C -0.005 4.005 23 N -0.918 5.918 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.108 3.892 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.040 0.960 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.115 0.885 46 H 0.042 0.958 47 H 0.071 0.929 48 H 0.255 0.745 49 H 0.046 0.954 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 -1.592 23.047 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.021 4.021 3 N -0.320 5.320 4 C 0.309 3.691 5 O -0.419 6.419 6 C -0.144 4.144 7 H 0.133 0.867 8 C -0.188 4.188 9 C 0.312 3.688 10 O -0.392 6.392 11 N -0.355 5.355 12 C 0.008 3.992 13 C -0.039 4.039 14 O -0.294 6.294 15 C -0.065 4.065 16 C -0.006 4.006 17 C -0.014 4.014 18 C 0.030 3.970 19 N -0.333 5.333 20 C -0.352 4.352 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.564 5.564 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.019 4.019 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.103 0.897 42 H 0.057 0.943 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.133 0.867 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.404 -1.282 23.031 23.191 hybrid contribution 0.202 0.213 -1.083 1.122 sum 2.605 -1.069 21.948 22.128 Atomic orbital electron populations 1.22832 0.95623 1.02807 1.04428 1.21581 0.94945 0.82479 1.03051 1.48154 1.63796 1.14070 1.05992 1.20017 0.77714 0.86469 0.84861 1.90689 1.46391 1.17722 1.87134 1.22222 0.97731 1.00708 0.93771 0.86669 1.22763 0.95422 1.05844 0.94785 1.20738 0.81869 0.76787 0.89442 1.90729 1.30139 1.51128 1.67226 1.48209 1.21828 1.57362 1.08067 1.21394 1.00922 0.95798 0.81087 1.23024 0.82976 0.98208 0.99670 1.88056 1.19449 1.31789 1.90119 1.22734 0.97964 0.86402 0.99394 1.21982 0.91869 1.00559 0.86179 1.24091 0.99737 0.97822 0.79776 1.22776 0.91221 0.99680 0.83313 1.45697 1.04532 1.80809 1.02234 1.18985 0.93083 1.43205 0.79917 0.90055 1.24827 0.95164 1.02058 0.98149 1.69823 0.97717 1.54953 1.33903 0.86105 0.77262 0.77415 0.85024 1.21572 1.21649 1.20503 1.22961 0.94685 0.96798 0.87416 0.91639 0.91254 0.90432 0.89502 0.90927 0.86913 0.86565 0.88748 0.89124 0.92441 0.92898 0.94182 0.89651 0.94320 0.89135 0.89947 0.86707 0.94017 0.91085 0.93523 0.93585 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.33 9.11 37.16 0.34 -1.99 16 2 C 0.10 1.20 4.81 -4.04 -0.02 1.18 16 3 N -0.59 -8.54 2.70 -167.91 -0.45 -9.00 16 4 C 0.52 7.25 6.96 -10.99 -0.08 7.17 16 5 O -0.54 -9.37 14.98 5.56 0.08 -9.29 16 6 C -0.12 -1.21 2.54 -90.14 -0.23 -1.44 16 7 H 0.12 0.86 7.25 -51.93 -0.38 0.49 16 8 C -0.15 -1.55 4.05 -26.74 -0.11 -1.66 16 9 C 0.52 6.63 7.74 -10.86 -0.08 6.54 16 10 O -0.52 -8.46 17.49 5.56 0.10 -8.36 16 11 N -0.62 -6.33 2.90 -172.42 -0.50 -6.83 16 12 C 0.13 1.07 6.33 -4.04 -0.03 1.04 16 13 C 0.04 0.34 6.28 37.16 0.23 0.57 16 14 O -0.38 -4.48 10.27 -35.23 -0.36 -4.85 16 15 C 0.03 0.28 11.01 101.05 1.11 1.39 16 16 C 0.12 1.10 6.71 -3.12 -0.02 1.08 16 17 C 0.09 1.67 4.40 -70.15 -0.31 1.36 16 18 C 0.16 3.48 6.34 -2.84 -0.02 3.47 16 19 N -0.61 -15.10 3.70 -177.90 -0.66 -15.76 16 20 C -0.22 -6.17 10.70 -15.06 -0.16 -6.34 16 21 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 22 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 23 N -0.92 -26.61 11.51 55.49 0.64 -25.98 16 24 Si 0.91 21.81 29.56 -169.99 -5.02 16.78 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 28 C 0.11 2.15 8.46 -2.97 -0.03 2.13 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.75 3.79 -51.93 -0.20 0.55 16 31 H 0.08 1.14 5.74 -51.93 -0.30 0.84 16 32 H 0.09 1.14 6.35 -51.93 -0.33 0.81 16 33 H 0.07 0.62 6.11 -51.93 -0.32 0.31 16 34 H 0.11 1.31 6.93 -51.93 -0.36 0.95 16 35 H 0.12 1.05 6.16 -51.93 -0.32 0.73 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.83 7.92 -51.93 -0.41 0.42 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 1.02 6.96 -51.92 -0.36 0.65 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.12 2.36 7.22 -51.93 -0.37 1.99 16 46 H 0.04 0.91 4.97 -51.93 -0.26 0.65 16 47 H 0.07 1.81 7.37 -51.93 -0.38 1.43 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.04 0.64 6.84 -51.93 -0.36 0.29 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -35.22 388.39 -7.51 -42.72 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.69 Total: 0.43 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 0.51 Total: 14.28 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.97 Total: -57.56 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.18 Total: -22.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.22 -7.51 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950458493.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.321 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds