Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46696 * 2 1 4 4 C 1.34772 * 120.00179 * 90.00051 * 3 2 1 5 5 O 1.21282 * 120.00058 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.99713 * 0.02562 * 4 3 2 7 7 H 1.09002 * 110.86014 * 56.20979 * 6 4 3 8 8 C 1.54628 * 110.96765 * 292.37467 * 6 4 3 9 9 C 1.51277 * 104.13300 * 216.86522 * 8 6 4 10 10 O 1.21280 * 124.94177 * 196.51289 * 9 8 6 11 11 N 1.34416 * 110.11923 * 16.65501 * 9 8 6 12 12 C 1.46500 * 124.35500 * 180.24988 * 11 9 8 13 13 C 1.52997 * 109.46970 * 269.70075 * 12 11 9 14 14 O 1.42898 * 109.47417 * 64.99798 * 13 12 11 15 15 C 1.42898 * 114.00273 * 180.02562 * 14 13 12 16 16 C 1.46766 * 111.29987 * 359.97438 * 11 9 8 17 17 C 1.46501 * 119.99744 * 269.99936 * 3 2 1 18 18 C 1.53944 * 113.74538 * 38.74541 * 17 3 2 19 19 N 1.47814 * 86.03377 * 222.08348 * 18 17 3 20 20 C 1.36944 * 134.45097 * 204.64275 * 19 18 17 21 21 H 1.08003 * 119.99760 * 173.34861 * 20 19 18 22 22 C 1.38807 * 120.00211 * 353.34936 * 20 19 18 23 23 N 1.31618 * 120.00035 * 5.05850 * 22 20 19 24 24 Si 1.86796 * 120.00014 * 185.06541 * 22 20 19 25 25 H 1.48505 * 109.47555 * 94.98423 * 24 22 20 26 26 H 1.48497 * 109.47188 * 214.98489 * 24 22 20 27 27 H 1.48504 * 109.47080 * 334.98411 * 24 22 20 28 28 C 1.47577 * 91.05643 * 24.54688 * 19 18 17 29 29 H 1.09002 * 109.46666 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47126 * 299.99709 * 1 2 3 31 31 H 1.09003 * 109.47154 * 60.00180 * 1 2 3 32 32 H 1.08999 * 109.47126 * 240.00291 * 2 1 3 33 33 H 1.08991 * 109.47565 * 119.99906 * 2 1 3 34 34 H 1.08991 * 110.48908 * 335.76443 * 8 6 4 35 35 H 1.09005 * 110.48485 * 98.40700 * 8 6 4 36 36 H 1.08997 * 109.47764 * 149.69677 * 12 11 9 37 37 H 1.08998 * 109.46638 * 29.69661 * 12 11 9 38 38 H 1.09005 * 109.47271 * 184.99710 * 13 12 11 39 39 H 1.09003 * 109.47191 * 304.99183 * 13 12 11 40 40 H 1.09004 * 109.47368 * 59.99832 * 15 14 13 41 41 H 1.09002 * 109.47442 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.47118 * 299.99951 * 15 14 13 43 43 H 1.09008 * 110.24427 * 102.25286 * 16 11 9 44 44 H 1.08992 * 110.25044 * 224.16397 * 16 11 9 45 45 H 1.08999 * 112.94254 * 170.33702 * 17 3 2 46 46 H 1.09001 * 113.76577 * 336.34499 * 18 17 3 47 47 H 1.08999 * 113.77108 * 107.74478 * 18 17 3 48 48 H 0.96996 * 119.99989 * 179.97438 * 23 22 20 49 49 H 1.08994 * 113.77170 * 221.15560 * 28 19 18 50 50 H 1.09004 * 113.87114 * 89.76525 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0167 1.1671 5 8 2.6475 3.1600 1.1671 6 6 1.9923 1.3060 2.4722 7 1 2.5626 0.3786 2.5249 8 6 0.4828 1.0407 2.6769 9 6 0.2711 1.2379 4.1618 10 8 -0.6980 0.8547 4.7822 11 7 1.3118 1.9023 4.6930 12 6 1.4311 2.2553 6.1098 13 6 0.8104 3.6336 6.3460 14 8 -0.5939 3.5742 6.0881 15 6 -1.2732 4.8167 6.2797 16 6 2.3165 2.2231 3.6723 17 6 2.2624 2.0719 -1.2688 18 6 1.2170 1.7606 -2.3551 19 7 2.3608 1.6803 -3.2879 20 6 2.5093 1.8429 -4.6395 21 1 3.4956 1.8336 -5.0794 22 6 1.3921 2.0197 -5.4442 23 7 0.1993 2.1309 -4.8990 24 14 1.5816 2.0998 -7.3008 25 1 1.3477 0.7529 -7.8809 26 1 0.5930 3.0573 -7.8584 27 1 2.9548 2.5529 -7.6392 28 6 3.2783 1.3570 -2.1781 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 -0.1109 1.7538 2.1050 35 1 0.2328 0.0189 2.3911 36 1 2.4838 2.2778 6.3914 37 1 0.9092 1.5134 6.7141 38 1 0.9774 3.9349 7.3802 39 1 1.2723 4.3596 5.6769 40 1 -0.8544 5.5670 5.6089 41 1 -2.3338 4.6881 6.0636 42 1 -1.1494 5.1430 7.3123 43 1 2.2358 3.2700 3.3795 44 1 3.3175 2.0136 4.0493 45 1 2.4599 3.1363 -1.1420 46 1 0.7014 0.8113 -2.2094 47 1 0.5378 2.5878 -2.5611 48 1 -0.5812 2.2548 -5.4613 49 1 4.2417 1.8627 -2.2431 50 1 3.3709 0.2893 -1.9791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950458493.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -58.499551 kcal Electronic energy + Delta-G solvation = -30933.015695 eV Core-core repulsion = 26769.402273 eV Total energy + Delta-G solvation = -4163.613422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.08398 -40.80496 -39.26004 -38.73911 -37.18662 -36.52695 -34.48737 -33.82495 -31.49125 -30.38739 -29.41203 -28.65142 -27.25068 -26.62930 -25.73241 -24.58788 -23.93816 -23.41706 -21.16022 -20.42141 -19.65561 -18.91852 -18.55383 -17.96366 -17.65751 -17.48512 -16.96891 -16.77770 -16.40148 -16.27166 -16.00492 -15.70563 -15.67245 -15.04170 -14.77294 -14.56287 -14.43648 -14.26563 -13.94405 -13.66178 -13.60683 -13.55154 -13.32616 -13.18571 -12.97142 -12.86046 -12.74063 -12.71542 -12.46649 -12.42465 -12.18983 -12.10579 -11.98380 -11.93443 -11.70162 -11.49712 -10.95769 -10.84453 -10.67699 -10.58362 -9.68957 -9.56494 -8.92099 -7.93614 -5.26253 1.45967 1.47212 1.54258 1.56438 1.62016 1.83791 2.11813 2.48779 2.90335 3.15543 3.26554 3.36353 3.45021 3.65390 3.84237 3.91798 4.02546 4.09450 4.16769 4.20351 4.34045 4.37799 4.45895 4.46368 4.46891 4.48335 4.53120 4.56374 4.60022 4.64604 4.76325 4.80055 4.80367 4.88149 4.89312 4.95620 4.99339 5.02742 5.21805 5.30699 5.48190 5.53818 5.58212 5.74930 5.90290 6.11239 6.26778 6.50444 6.89680 7.15338 7.21545 7.58245 8.52685 9.23928 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.002410 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.247320 B =11617.257766 C =11727.347017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.099 3.901 3 N -0.589 5.589 4 C 0.524 3.476 5 O -0.578 6.578 6 C -0.108 4.108 7 H 0.157 0.843 8 C -0.144 4.144 9 C 0.518 3.482 10 O -0.562 6.562 11 N -0.613 5.613 12 C 0.124 3.876 13 C 0.034 3.966 14 O -0.413 6.413 15 C 0.029 3.971 16 C 0.119 3.881 17 C 0.116 3.884 18 C 0.160 3.840 19 N -0.639 5.639 20 C -0.234 4.234 21 H 0.085 0.915 22 C -0.064 4.064 23 N -0.950 5.950 24 Si 0.978 3.022 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.267 1.267 28 C 0.116 3.884 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.049 0.951 47 H 0.028 0.972 48 H 0.249 0.751 49 H 0.051 0.949 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.984 -3.070 24.735 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.022 4.022 3 N -0.319 5.319 4 C 0.313 3.687 5 O -0.458 6.458 6 C -0.129 4.129 7 H 0.174 0.826 8 C -0.183 4.183 9 C 0.306 3.694 10 O -0.441 6.441 11 N -0.347 5.347 12 C 0.003 3.997 13 C -0.043 4.043 14 O -0.332 6.332 15 C -0.068 4.068 16 C -0.004 4.004 17 C 0.011 3.989 18 C 0.034 3.966 19 N -0.366 5.366 20 C -0.362 4.362 21 H 0.103 0.897 22 C -0.258 4.258 23 N -0.598 5.598 24 Si 0.806 3.194 25 H -0.212 1.212 26 H -0.223 1.223 27 H -0.192 1.192 28 C -0.010 4.010 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.115 0.885 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.135 0.865 45 H 0.110 0.890 46 H 0.067 0.933 47 H 0.046 0.954 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.539 -2.766 24.760 25.324 hybrid contribution -0.422 0.731 -1.510 1.730 sum 4.117 -2.035 23.251 23.700 Atomic orbital electron populations 1.22796 0.95807 1.03822 1.02935 1.21838 0.94754 0.80789 1.04841 1.48089 1.64042 1.15107 1.04686 1.20651 0.76395 0.86006 0.85680 1.90686 1.47880 1.19535 1.87704 1.22221 0.97677 1.01861 0.91137 0.82596 1.22738 0.95637 1.06627 0.93347 1.21037 0.81681 0.76625 0.90080 1.90706 1.31867 1.53250 1.68255 1.48320 1.21200 1.56063 1.09082 1.21680 1.03158 0.95148 0.79725 1.23210 0.81485 0.98499 1.01141 1.88012 1.21302 1.33296 1.90599 1.22822 0.97668 0.85619 1.00648 1.22040 0.93176 0.99294 0.85848 1.23279 0.97368 0.96964 0.81324 1.22653 0.90919 0.98404 0.84582 1.46035 1.06676 1.81424 1.02462 1.19363 0.93286 1.42035 0.81559 0.89694 1.25648 0.95002 1.02671 1.02441 1.70012 0.98209 1.56633 1.34992 0.85070 0.77421 0.77110 0.79801 1.21225 1.22307 1.19176 1.23067 0.94271 0.98201 0.85444 0.89391 0.90399 0.94197 0.90480 0.86250 0.88488 0.84547 0.84755 0.90253 0.89958 0.92998 0.94046 0.90004 0.92360 0.91183 0.86467 0.88956 0.93313 0.95402 0.94219 0.93080 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.27 9.11 71.98 0.66 -3.62 16 2 C 0.10 2.05 4.81 86.38 0.42 2.47 16 3 N -0.59 -16.15 2.70 -803.53 -2.17 -18.31 16 4 C 0.52 13.50 6.96 87.66 0.61 14.11 16 5 O -0.58 -19.58 14.98 -3.04 -0.05 -19.63 16 6 C -0.11 -1.74 2.54 -10.48 -0.03 -1.77 16 7 H 0.16 1.37 7.25 -2.39 -0.02 1.35 16 8 C -0.14 -2.68 4.05 30.59 0.12 -2.56 16 9 C 0.52 12.31 7.74 87.90 0.68 12.99 16 10 O -0.56 -18.19 17.49 -3.03 -0.05 -18.25 16 11 N -0.61 -11.09 2.90 -818.01 -2.37 -13.45 16 12 C 0.12 1.73 6.33 86.38 0.55 2.28 16 13 C 0.03 0.53 6.28 71.98 0.45 0.98 16 14 O -0.41 -9.70 10.27 -148.98 -1.53 -11.23 16 15 C 0.03 0.50 11.01 113.37 1.25 1.74 16 16 C 0.12 1.85 6.71 86.83 0.58 2.44 16 17 C 0.12 4.35 4.40 46.75 0.21 4.56 16 18 C 0.16 7.41 6.34 86.44 0.55 7.96 16 19 N -0.64 -32.27 3.70 -716.74 -2.65 -34.92 16 20 C -0.23 -13.03 10.70 84.03 0.90 -12.13 16 21 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 22 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 23 N -0.95 -57.04 11.51 21.65 0.25 -56.79 16 24 Si 0.98 45.48 29.56 68.60 2.03 47.51 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 26 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 C 0.12 4.50 8.46 86.49 0.73 5.23 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.56 3.79 -2.39 -0.01 1.55 16 31 H 0.04 1.18 5.74 -2.39 -0.01 1.17 16 32 H 0.08 1.80 6.35 -2.39 -0.02 1.79 16 33 H 0.12 1.40 6.11 -2.39 -0.01 1.39 16 34 H 0.10 2.18 6.93 -2.39 -0.02 2.16 16 35 H 0.14 1.99 6.16 -2.38 -0.01 1.97 16 36 H 0.13 0.76 8.14 -2.39 -0.02 0.75 16 37 H 0.08 1.33 7.92 -2.39 -0.02 1.31 16 38 H 0.08 0.84 8.14 -2.38 -0.02 0.83 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 1.45 6.96 -2.38 -0.02 1.43 16 44 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 3.92 7.22 -2.39 -0.02 3.90 16 46 H 0.05 2.19 4.97 -2.39 -0.01 2.17 16 47 H 0.03 1.50 7.37 -2.39 -0.02 1.49 16 48 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 49 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.06 2.09 6.84 -2.38 -0.02 2.08 16 Total: -1.00 -81.05 388.39 2.55 -78.50 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.95 Total: 15.08 kcal Atomic # 6 Polarization: 23.35 SS G_CDS: 8.14 Total: 31.49 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -6.94 Total: -123.48 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -1.63 Total: -49.10 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -81.05 2.55 -78.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950458493.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.000 kcal (2) G-P(sol) polarization free energy of solvation -81.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds