Wall clock time and date at job start Sat Apr 11 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46998 * 2 1 4 4 C 1.34783 * 119.99980 * 276.08143 * 3 2 1 5 5 O 1.21282 * 120.00171 * 184.69528 * 4 3 2 6 6 C 1.50699 * 119.99862 * 4.69676 * 4 3 2 7 7 H 1.09007 * 109.51480 * 43.42848 * 6 4 3 8 8 C 1.53299 * 109.51397 * 283.33036 * 6 4 3 9 9 N 1.47141 * 108.38718 * 187.77332 * 8 6 4 10 10 C 1.34774 * 120.98558 * 230.55794 * 9 8 6 11 11 C 1.50705 * 120.00376 * 180.02562 * 10 9 8 12 12 O 1.21277 * 119.99878 * 359.97438 * 10 9 8 13 13 C 1.47160 * 118.03723 * 50.53415 * 9 8 6 14 14 C 1.53297 * 108.38331 * 309.46532 * 13 9 8 15 15 O 1.42959 * 109.26456 * 52.27470 * 14 13 9 16 16 C 1.46497 * 120.00366 * 96.07895 * 3 2 1 17 17 H 1.09001 * 110.64176 * 174.04800 * 16 3 2 18 18 C 1.55164 * 110.72012 * 297.19118 * 16 3 2 19 19 C 1.54910 * 101.57927 * 153.86207 * 18 16 3 20 20 N 1.47422 * 104.93065 * 322.93522 * 19 18 16 21 21 C 1.36942 * 125.64919 * 204.15470 * 20 19 18 22 22 H 1.07998 * 119.99921 * 180.02562 * 21 20 19 23 23 C 1.38806 * 119.99930 * 0.02607 * 21 20 19 24 24 N 1.31622 * 119.99953 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00049 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47007 * 60.00141 * 25 23 21 27 27 H 1.48506 * 109.47318 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47127 * 299.99875 * 25 23 21 29 29 C 1.47287 * 108.55998 * 24.15614 * 20 19 18 30 30 H 1.09005 * 109.46648 * 174.43825 * 1 2 3 31 31 H 1.09003 * 109.47121 * 294.43760 * 1 2 3 32 32 H 1.09001 * 109.47260 * 54.44142 * 1 2 3 33 33 H 1.08997 * 109.46912 * 240.00210 * 2 1 3 34 34 H 1.09003 * 109.46872 * 119.99823 * 2 1 3 35 35 H 1.08998 * 109.67900 * 307.50004 * 8 6 4 36 36 H 1.09002 * 109.67897 * 68.04590 * 8 6 4 37 37 H 1.09002 * 109.46953 * 59.99406 * 11 10 9 38 38 H 1.09000 * 109.47404 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.46850 * 299.99739 * 11 10 9 40 40 H 1.08999 * 109.67967 * 69.18556 * 13 9 8 41 41 H 1.08993 * 109.68380 * 189.70157 * 13 9 8 42 42 H 1.08998 * 109.51007 * 172.22323 * 14 13 9 43 43 H 1.08997 * 109.51004 * 292.32907 * 14 13 9 44 44 H 1.09001 * 111.00291 * 35.79056 * 18 16 3 45 45 H 1.08992 * 111.00403 * 271.93663 * 18 16 3 46 46 H 1.08996 * 110.36489 * 81.83080 * 19 18 16 47 47 H 1.09001 * 110.36443 * 204.03843 * 19 18 16 48 48 H 0.97003 * 120.00059 * 179.97438 * 24 23 21 49 49 H 1.09001 * 109.86069 * 239.50459 * 29 20 19 50 50 H 1.09002 * 110.00621 * 118.42425 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1264 2.0578 -1.1607 5 8 2.6100 3.1699 -1.1716 6 6 1.6462 1.4323 -2.4449 7 1 0.6834 0.9494 -2.2770 8 6 2.6656 0.3905 -2.9196 9 7 2.2708 -0.0676 -4.2610 10 6 2.1725 -1.3815 -4.5445 11 6 1.7668 -1.8261 -5.9262 12 8 2.4115 -2.2062 -3.6880 13 6 1.9858 0.9513 -5.2839 14 6 0.9995 1.9658 -4.6940 15 8 1.5050 2.4439 -3.4452 16 6 2.3892 2.0271 1.2615 17 1 2.8278 3.0077 1.0767 18 6 1.1596 2.1438 2.2007 19 6 1.8348 2.1734 3.5946 20 7 2.9720 1.2417 3.4857 21 6 3.5695 0.5861 4.5290 22 1 4.4006 -0.0784 4.3443 23 6 3.1070 0.7756 5.8239 24 7 2.0937 1.5850 6.0489 25 14 3.9215 -0.1192 7.2470 26 1 5.3542 0.2648 7.3181 27 1 3.2457 0.2512 8.5165 28 1 3.8117 -1.5852 7.0378 29 6 3.3566 1.1351 2.0679 30 1 -0.3633 -1.0229 -0.0996 31 1 -0.3633 0.4252 0.9356 32 1 -0.3634 0.5976 -0.8360 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.6574 0.8404 -2.9625 36 1 2.6747 -0.4544 -2.2310 37 1 2.4871 -1.4527 -6.6541 38 1 1.7426 -2.9151 -5.9650 39 1 0.7775 -1.4318 -6.1588 40 1 2.9092 1.4578 -5.5648 41 1 1.5454 0.4777 -6.1612 42 1 0.8816 2.8020 -5.3832 43 1 0.0340 1.4853 -4.5360 44 1 0.5078 1.2759 2.1007 45 1 0.6107 3.0665 2.0128 46 1 2.1885 3.1786 3.8236 47 1 1.1380 1.8335 4.3609 48 1 1.7702 1.7172 6.9538 49 1 3.2691 0.1001 1.7373 50 1 4.3809 1.4822 1.9322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034027949.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:18 Heat of formation + Delta-G solvation = -58.265410 kcal Electronic energy + Delta-G solvation = -31524.722895 eV Core-core repulsion = 27361.119626 eV Total energy + Delta-G solvation = -4163.603269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.07420 -39.84938 -38.50291 -37.22294 -35.42382 -35.10748 -32.78430 -31.89788 -30.43313 -30.31859 -29.21913 -28.28661 -26.97532 -25.10163 -24.51380 -23.52123 -22.75911 -20.60504 -20.20975 -19.75014 -18.71717 -17.69708 -17.57947 -17.08915 -16.80614 -16.46563 -15.97627 -15.81535 -15.44253 -14.78670 -14.59815 -14.54049 -14.09008 -14.04693 -13.92853 -13.72935 -13.37861 -13.22814 -13.12098 -12.62988 -12.60548 -12.49131 -12.37482 -12.13908 -11.91548 -11.81048 -11.50695 -11.35696 -11.03436 -10.85931 -10.79326 -10.75542 -10.58618 -10.28925 -10.22778 -10.13914 -9.79610 -9.59600 -9.53657 -9.01598 -8.65226 -8.41394 -6.84915 -5.65509 -3.08056 2.17494 2.29577 2.58957 2.75680 3.41153 3.45364 3.46583 3.64183 4.05008 4.22179 4.36478 4.41839 4.49516 4.54409 4.68402 4.72498 4.74642 4.84277 4.89850 5.08882 5.14197 5.20006 5.24860 5.38519 5.39366 5.46278 5.48726 5.52649 5.56984 5.65344 5.75730 5.82390 5.86935 5.87826 6.15217 6.29707 6.39958 6.53054 6.59746 6.63028 6.73244 6.87442 6.99637 7.48335 7.54587 7.61460 7.70650 7.84046 8.22418 8.34727 9.20780 9.81140 10.45609 11.37984 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.002766 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.577508 B =10119.994681 C =10868.955940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 N -0.591 5.591 4 C 0.524 3.476 5 O -0.519 6.519 6 C 0.061 3.939 7 H 0.090 0.910 8 C 0.083 3.917 9 N -0.618 5.618 10 C 0.513 3.487 11 C -0.173 4.173 12 O -0.538 6.538 13 C 0.070 3.930 14 C 0.045 3.955 15 O -0.349 6.349 16 C 0.128 3.872 17 H 0.104 0.896 18 C -0.156 4.156 19 C 0.153 3.847 20 N -0.601 5.601 21 C -0.223 4.223 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.916 3.084 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.128 3.872 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.014 0.986 47 H 0.110 0.890 48 H 0.253 0.747 49 H 0.031 0.969 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 -3.452 -26.596 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.036 4.036 3 N -0.324 5.324 4 C 0.309 3.691 5 O -0.393 6.393 6 C -0.001 4.001 7 H 0.108 0.892 8 C -0.040 4.040 9 N -0.353 5.353 10 C 0.302 3.698 11 C -0.232 4.232 12 O -0.414 6.414 13 C -0.053 4.053 14 C -0.033 4.033 15 O -0.266 6.266 16 C 0.025 3.975 17 H 0.122 0.878 18 C -0.195 4.195 19 C 0.028 3.972 20 N -0.328 5.328 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.571 5.571 25 Si 0.746 3.254 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.001 3.999 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.131 0.869 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.032 0.968 47 H 0.127 0.873 48 H 0.064 0.936 49 H 0.049 0.951 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.400 -3.134 -25.877 26.620 hybrid contribution 0.326 -0.606 0.528 0.867 sum -5.074 -3.740 -25.349 26.122 Atomic orbital electron populations 1.22405 0.95740 1.02232 1.02929 1.21888 0.94760 0.82606 1.04345 1.47912 1.64236 1.14013 1.06250 1.19780 0.79351 0.85974 0.84033 1.90715 1.43229 1.19352 1.86037 1.22442 0.99806 0.89319 0.88548 0.89202 1.22323 0.98187 0.98529 0.84917 1.48196 1.69166 1.05953 1.12015 1.20897 0.76675 0.81228 0.90965 1.21946 1.03234 1.04425 0.93605 1.90756 1.49533 1.51550 1.49579 1.22546 1.00947 0.90410 0.91409 1.23065 0.95602 0.98318 0.86267 1.88122 1.85743 1.31962 1.20812 1.22279 0.96901 0.97199 0.81124 0.87820 1.23526 0.96697 1.00962 0.98336 1.21943 0.90378 0.92538 0.92356 1.44471 1.36485 1.51693 1.00146 1.19019 1.11398 1.19560 0.85101 0.90495 1.24784 0.98698 0.99791 0.97277 1.69775 1.27597 1.40060 1.19642 0.86138 0.78542 0.79101 0.81621 1.21202 1.21569 1.21146 1.21592 0.95441 0.96540 0.86326 0.91417 0.90842 0.93033 0.90577 0.88109 0.89761 0.86759 0.89235 0.88694 0.89264 0.89900 0.88279 0.86857 0.92349 0.91159 0.92133 0.96778 0.87271 0.93634 0.95136 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.76 37.16 0.36 -1.67 16 2 C 0.09 1.14 5.09 -4.04 -0.02 1.12 16 3 N -0.59 -9.22 2.50 -164.02 -0.41 -9.63 16 4 C 0.52 8.33 6.93 -10.98 -0.08 8.25 16 5 O -0.52 -10.25 15.97 -13.76 -0.22 -10.47 16 6 C 0.06 0.74 2.40 -27.73 -0.07 0.67 16 7 H 0.09 0.98 5.61 -51.93 -0.29 0.69 16 8 C 0.08 0.93 5.68 -3.54 -0.02 0.91 16 9 N -0.62 -5.44 3.02 -172.28 -0.52 -5.96 16 10 C 0.51 4.85 7.82 -10.98 -0.09 4.76 16 11 C -0.17 -0.81 8.69 36.01 0.31 -0.49 16 12 O -0.54 -7.49 16.55 5.56 0.09 -7.39 16 13 C 0.07 0.39 6.54 -3.53 -0.02 0.36 16 14 C 0.05 0.31 6.98 37.31 0.26 0.57 16 15 O -0.35 -4.24 9.97 -54.55 -0.54 -4.78 16 16 C 0.13 2.40 3.36 -66.09 -0.22 2.18 16 17 H 0.10 2.11 7.01 -51.93 -0.36 1.74 16 18 C -0.16 -3.00 6.61 -24.58 -0.16 -3.16 16 19 C 0.15 3.72 5.88 -2.53 -0.01 3.70 16 20 N -0.60 -15.37 3.40 -169.86 -0.58 -15.95 16 21 C -0.22 -6.19 10.28 -15.06 -0.15 -6.34 16 22 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 25 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 C 0.13 2.71 6.79 -2.92 -0.02 2.69 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.96 5.72 -51.93 -0.30 0.66 16 32 H 0.05 0.55 6.24 -51.93 -0.32 0.23 16 33 H 0.08 0.90 4.54 -51.93 -0.24 0.66 16 34 H 0.10 1.49 5.98 -51.93 -0.31 1.18 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.11 1.38 4.43 -51.93 -0.23 1.14 16 37 H 0.09 0.25 8.02 -51.93 -0.42 -0.16 16 38 H 0.09 0.47 8.12 -51.93 -0.42 0.05 16 39 H 0.09 0.23 7.66 -51.93 -0.40 -0.17 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.22 6.05 -51.93 -0.31 -0.10 16 42 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 1.28 5.03 -51.93 -0.26 1.02 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.11 2.95 5.87 -51.93 -0.30 2.65 16 48 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.03 0.62 5.82 -51.93 -0.30 0.32 16 50 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -35.47 378.06 -8.37 -43.84 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.40 Total: 0.61 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -0.03 Total: 13.18 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.95 Total: -57.74 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.67 Total: -22.64 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.47 -8.37 -43.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034027949.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.421 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds