Wall clock time and date at job start Sat Apr 11 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.47372 * 2 1 4 4 C 1.34774 * 119.99839 * 272.25067 * 3 2 1 5 5 O 1.21283 * 119.99962 * 182.75033 * 4 3 2 6 6 C 1.50700 * 120.00243 * 2.74720 * 4 3 2 7 7 H 1.09003 * 109.51178 * 43.86606 * 6 4 3 8 8 C 1.53288 * 109.51670 * 283.76626 * 6 4 3 9 9 N 1.47147 * 108.39031 * 187.77084 * 8 6 4 10 10 C 1.34771 * 120.98688 * 230.51542 * 9 8 6 11 11 C 1.50696 * 120.00255 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00157 * 359.97438 * 10 9 8 13 13 C 1.47157 * 118.03231 * 50.53292 * 9 8 6 14 14 C 1.53288 * 108.38333 * 309.46652 * 13 9 8 15 15 O 1.42959 * 109.51328 * 164.01600 * 6 4 3 16 16 C 1.46502 * 119.99786 * 92.25303 * 3 2 1 17 17 H 1.09000 * 110.88232 * 183.27845 * 16 3 2 18 18 C 1.55402 * 110.89179 * 59.39647 * 16 3 2 19 19 C 1.54329 * 102.82684 * 277.26240 * 18 16 3 20 20 N 1.47016 * 107.40196 * 337.98165 * 19 18 16 21 21 C 1.36938 * 125.64862 * 178.89629 * 20 19 18 22 22 H 1.07996 * 120.00141 * 179.97438 * 21 20 19 23 23 C 1.38812 * 119.99933 * 359.97438 * 21 20 19 24 24 N 1.31621 * 119.99774 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00082 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47150 * 60.00047 * 25 23 21 27 27 H 1.48500 * 109.47084 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47157 * 299.99879 * 25 23 21 29 29 C 1.47422 * 108.70483 * 358.86011 * 20 19 18 30 30 H 1.08997 * 109.47393 * 59.99863 * 1 2 3 31 31 H 1.09000 * 109.47444 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46940 * 300.00166 * 1 2 3 33 33 H 1.09007 * 109.47389 * 239.99789 * 2 1 3 34 34 H 1.09005 * 109.47297 * 119.99894 * 2 1 3 35 35 H 1.09001 * 109.68300 * 307.50166 * 8 6 4 36 36 H 1.09006 * 109.68186 * 68.04561 * 8 6 4 37 37 H 1.08999 * 109.47207 * 59.99715 * 11 10 9 38 38 H 1.09003 * 109.47368 * 180.02562 * 11 10 9 39 39 H 1.09007 * 109.47423 * 299.99737 * 11 10 9 40 40 H 1.09001 * 109.67944 * 69.19087 * 13 9 8 41 41 H 1.09001 * 109.67849 * 189.70800 * 13 9 8 42 42 H 1.08999 * 109.51135 * 172.22390 * 14 13 9 43 43 H 1.08999 * 109.51442 * 292.32710 * 14 13 9 44 44 H 1.09004 * 110.69002 * 158.97641 * 18 16 3 45 45 H 1.08997 * 110.85513 * 35.62826 * 18 16 3 46 46 H 1.08995 * 109.88200 * 218.48209 * 19 18 16 47 47 H 1.09001 * 109.87477 * 97.47468 * 19 18 16 48 48 H 0.97003 * 119.99863 * 180.02562 * 24 23 21 49 49 H 1.09007 * 110.36793 * 142.96932 * 29 20 19 50 50 H 1.09000 * 110.37189 * 265.28916 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1997 2.0318 -1.1663 5 8 2.6512 3.1575 -1.1689 6 6 1.8418 1.3606 -2.4672 7 1 0.8791 0.8595 -2.3655 8 6 2.9193 0.3310 -2.8257 9 7 2.6476 -0.1726 -4.1814 10 6 2.6025 -1.4956 -4.4340 11 6 2.3218 -1.9869 -5.8307 12 8 2.7879 -2.2909 -3.5373 13 6 2.4268 0.8113 -5.2532 14 6 1.3732 1.8174 -4.7764 15 8 1.7637 2.3409 -3.5047 16 6 2.3095 2.0552 1.2678 17 1 2.6066 3.0901 1.0984 18 6 3.3972 1.2855 2.0675 19 6 2.5843 0.1818 2.7767 20 7 1.1875 0.6360 2.8391 21 6 0.1425 -0.0683 3.3751 22 1 -0.8512 0.3547 3.3732 23 6 0.3604 -1.3258 3.9209 24 7 1.5714 -1.8415 3.9228 25 14 -1.0649 -2.2862 4.6526 26 1 -2.0917 -2.5224 3.6062 27 1 -0.5720 -3.5900 5.1650 28 1 -1.6640 -1.5101 5.7679 29 6 1.0982 1.9755 2.2300 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9014 0.8031 -2.7995 36 1 2.8894 -0.4946 -2.1146 37 1 3.0909 -1.6155 -6.5080 38 1 2.3245 -3.0769 -5.8399 39 1 1.3463 -1.6237 -6.1545 40 1 3.3593 1.3318 -5.4714 41 1 2.0712 0.3036 -6.1499 42 1 1.2950 2.6316 -5.4969 43 1 0.4084 1.3184 -4.6849 44 1 3.8755 1.9405 2.7957 45 1 4.1364 0.8488 1.3959 46 1 2.9694 0.0275 3.7846 47 1 2.6472 -0.7470 2.2097 48 1 1.7237 -2.7205 4.3038 49 1 0.1655 2.0785 1.6751 50 1 1.1714 2.7467 2.9968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034027957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:21 Heat of formation + Delta-G solvation = -53.298427 kcal Electronic energy + Delta-G solvation = -32403.389574 eV Core-core repulsion = 28240.001690 eV Total energy + Delta-G solvation = -4163.387884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92035 -39.75597 -38.44809 -37.28287 -35.06517 -34.65475 -32.73947 -31.80386 -30.26901 -30.17180 -28.92910 -28.18493 -27.13595 -24.99745 -24.42866 -23.23115 -22.37454 -20.73414 -20.09197 -19.61955 -18.60941 -17.49985 -17.40291 -17.00250 -16.63581 -16.34678 -15.83723 -15.67546 -15.30035 -14.66892 -14.58976 -14.40137 -13.95767 -13.82991 -13.80541 -13.45410 -13.36582 -12.93446 -12.77196 -12.49793 -12.46622 -12.26147 -12.11176 -11.92853 -11.85245 -11.74364 -11.19545 -11.15471 -10.95255 -10.88215 -10.78809 -10.47947 -10.39634 -10.17670 -10.10644 -10.00551 -9.82066 -9.65651 -9.30633 -8.86315 -8.65548 -8.20479 -6.85085 -5.74324 -3.07595 2.32575 2.45199 2.76230 2.93645 3.38637 3.43993 3.44969 3.84053 4.20507 4.36082 4.47585 4.53269 4.59247 4.70703 4.83387 4.86815 4.88705 5.02447 5.16966 5.23266 5.32364 5.37763 5.45625 5.46461 5.50581 5.52087 5.69413 5.73925 5.86400 5.92750 5.98250 6.01076 6.19402 6.30712 6.36316 6.46790 6.52733 6.62660 6.68627 6.77821 7.01732 7.02474 7.12089 7.52090 7.54326 7.75017 7.83394 7.86412 8.20814 8.40665 9.18357 9.78378 10.44149 11.37036 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.003759 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.003113 B = 7447.154512 C = 8533.940758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.081 3.919 3 N -0.579 5.579 4 C 0.522 3.478 5 O -0.531 6.531 6 C 0.063 3.937 7 H 0.090 0.910 8 C 0.084 3.916 9 N -0.618 5.618 10 C 0.511 3.489 11 C -0.172 4.172 12 O -0.534 6.534 13 C 0.071 3.929 14 C 0.045 3.955 15 O -0.350 6.350 16 C 0.124 3.876 17 H 0.100 0.900 18 C -0.156 4.156 19 C 0.173 3.827 20 N -0.601 5.601 21 C -0.225 4.225 22 H 0.076 0.924 23 C -0.004 4.004 24 N -0.921 5.921 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.124 3.876 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.044 0.956 47 H 0.053 0.947 48 H 0.253 0.747 49 H 0.047 0.953 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 3.924 -20.649 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.040 4.040 3 N -0.311 5.311 4 C 0.307 3.693 5 O -0.408 6.408 6 C 0.001 3.999 7 H 0.108 0.892 8 C -0.038 4.038 9 N -0.354 5.354 10 C 0.300 3.700 11 C -0.232 4.232 12 O -0.410 6.410 13 C -0.052 4.052 14 C -0.033 4.033 15 O -0.267 6.267 16 C 0.020 3.980 17 H 0.118 0.882 18 C -0.196 4.196 19 C 0.049 3.951 20 N -0.328 5.328 21 C -0.353 4.353 22 H 0.094 0.906 23 C -0.200 4.200 24 N -0.568 5.568 25 Si 0.738 3.262 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.002 4.002 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.130 0.870 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.731 4.040 -20.021 20.498 hybrid contribution -0.890 -0.853 0.265 1.261 sum 0.840 3.186 -19.756 20.029 Atomic orbital electron populations 1.22199 0.95537 1.02321 1.01821 1.22264 0.95487 0.81365 1.04914 1.47812 1.63847 1.14716 1.04758 1.19787 0.78908 0.86175 0.84385 1.90674 1.44511 1.18651 1.86923 1.22371 0.99946 0.89630 0.87995 0.89249 1.22315 0.98423 0.98263 0.84840 1.48193 1.71866 1.05878 1.09459 1.20892 0.76198 0.81231 0.91630 1.21939 1.03641 1.04127 0.93445 1.90779 1.48840 1.53882 1.47513 1.22525 1.00822 0.91254 0.90642 1.23050 0.96273 0.97828 0.86124 1.88100 1.89434 1.32161 1.17053 1.22351 0.96876 0.96540 0.82224 0.88219 1.23318 0.97500 0.99819 0.98914 1.21263 0.82892 0.92635 0.98351 1.44488 1.04805 1.14111 1.69371 1.18899 0.87604 0.97310 1.31458 0.90639 1.24732 0.96587 0.97519 1.01179 1.69931 1.18829 1.17641 1.50412 0.86268 0.81469 0.79368 0.79058 1.21231 1.21673 1.21311 1.21942 0.95520 0.89496 0.93288 0.95107 0.91989 0.89533 0.92111 0.85535 0.90000 0.86609 0.89322 0.88719 0.89315 0.90036 0.88382 0.87000 0.92361 0.91218 0.91781 0.93785 0.92909 0.93657 0.93518 0.95209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.76 37.15 0.36 -2.45 16 2 C 0.08 1.43 4.89 -4.04 -0.02 1.41 16 3 N -0.58 -10.08 2.52 -163.52 -0.41 -10.49 16 4 C 0.52 9.02 6.97 -10.99 -0.08 8.94 16 5 O -0.53 -10.71 15.97 -13.80 -0.22 -10.93 16 6 C 0.06 0.88 2.37 -27.73 -0.07 0.82 16 7 H 0.09 1.23 6.03 -51.93 -0.31 0.92 16 8 C 0.08 1.11 5.66 -3.54 -0.02 1.09 16 9 N -0.62 -6.57 3.02 -172.28 -0.52 -7.09 16 10 C 0.51 5.84 7.82 -10.99 -0.09 5.75 16 11 C -0.17 -1.08 8.69 36.00 0.31 -0.77 16 12 O -0.53 -8.68 16.56 5.55 0.09 -8.59 16 13 C 0.07 0.49 6.54 -3.53 -0.02 0.47 16 14 C 0.05 0.37 6.98 37.31 0.26 0.63 16 15 O -0.35 -4.73 9.97 -54.58 -0.54 -5.27 16 16 C 0.12 2.27 3.67 -65.65 -0.24 2.02 16 17 H 0.10 1.81 7.03 -51.93 -0.36 1.45 16 18 C -0.16 -2.89 6.47 -24.76 -0.16 -3.05 16 19 C 0.17 3.91 4.26 -3.06 -0.01 3.90 16 20 N -0.60 -13.97 2.09 -170.08 -0.36 -14.33 16 21 C -0.22 -5.77 9.25 -15.06 -0.14 -5.91 16 22 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 23 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 24 N -0.92 -25.57 10.31 55.49 0.57 -25.00 16 25 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 C 0.12 2.49 5.96 -2.53 -0.02 2.47 16 30 H 0.03 0.47 6.68 -51.93 -0.35 0.12 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.71 4.25 -51.93 -0.22 1.49 16 33 H 0.06 0.98 4.42 -51.93 -0.23 0.76 16 34 H 0.13 2.65 3.76 -51.93 -0.20 2.45 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.12 1.72 4.58 -51.93 -0.24 1.48 16 37 H 0.09 0.37 8.01 -51.93 -0.42 -0.05 16 38 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 39 H 0.09 0.37 7.66 -51.93 -0.40 -0.02 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.35 6.05 -51.93 -0.31 0.04 16 42 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 47 H 0.05 1.30 5.35 -51.93 -0.28 1.03 16 48 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.05 0.93 6.50 -51.93 -0.34 0.60 16 50 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -32.90 373.30 -8.20 -41.09 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.39 Total: 3.51 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: -0.02 Total: 15.13 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.72 Total: -56.92 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.67 Total: -24.80 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.90 -8.20 -41.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034027957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.204 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds