Wall clock time and date at job start Sat Apr 11 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.47372 * 2 1 4 4 C 1.34774 * 119.99839 * 272.25067 * 3 2 1 5 5 O 1.21283 * 119.99962 * 182.75033 * 4 3 2 6 6 C 1.50700 * 120.00243 * 2.74720 * 4 3 2 7 7 H 1.09003 * 109.51178 * 43.86606 * 6 4 3 8 8 C 1.53288 * 109.51670 * 283.76626 * 6 4 3 9 9 N 1.47147 * 108.39031 * 187.77084 * 8 6 4 10 10 C 1.34771 * 120.98688 * 230.51542 * 9 8 6 11 11 C 1.50696 * 120.00255 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00157 * 359.97438 * 10 9 8 13 13 C 1.47157 * 118.03231 * 50.53292 * 9 8 6 14 14 C 1.53288 * 108.38333 * 309.46652 * 13 9 8 15 15 O 1.42959 * 109.51328 * 164.01600 * 6 4 3 16 16 C 1.46502 * 119.99786 * 92.25303 * 3 2 1 17 17 H 1.09000 * 110.88232 * 183.27845 * 16 3 2 18 18 C 1.55402 * 110.89179 * 59.39647 * 16 3 2 19 19 C 1.54329 * 102.82684 * 277.26240 * 18 16 3 20 20 N 1.47016 * 107.40196 * 337.98165 * 19 18 16 21 21 C 1.36938 * 125.64862 * 178.89629 * 20 19 18 22 22 H 1.07996 * 120.00141 * 179.97438 * 21 20 19 23 23 C 1.38812 * 119.99933 * 359.97438 * 21 20 19 24 24 N 1.31621 * 119.99774 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00082 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47150 * 60.00047 * 25 23 21 27 27 H 1.48500 * 109.47084 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47157 * 299.99879 * 25 23 21 29 29 C 1.47422 * 108.70483 * 358.86011 * 20 19 18 30 30 H 1.08997 * 109.47393 * 59.99863 * 1 2 3 31 31 H 1.09000 * 109.47444 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46940 * 300.00166 * 1 2 3 33 33 H 1.09007 * 109.47389 * 239.99789 * 2 1 3 34 34 H 1.09005 * 109.47297 * 119.99894 * 2 1 3 35 35 H 1.09001 * 109.68300 * 307.50166 * 8 6 4 36 36 H 1.09006 * 109.68186 * 68.04561 * 8 6 4 37 37 H 1.08999 * 109.47207 * 59.99715 * 11 10 9 38 38 H 1.09003 * 109.47368 * 180.02562 * 11 10 9 39 39 H 1.09007 * 109.47423 * 299.99737 * 11 10 9 40 40 H 1.09001 * 109.67944 * 69.19087 * 13 9 8 41 41 H 1.09001 * 109.67849 * 189.70800 * 13 9 8 42 42 H 1.08999 * 109.51135 * 172.22390 * 14 13 9 43 43 H 1.08999 * 109.51442 * 292.32710 * 14 13 9 44 44 H 1.09004 * 110.69002 * 158.97641 * 18 16 3 45 45 H 1.08997 * 110.85513 * 35.62826 * 18 16 3 46 46 H 1.08995 * 109.88200 * 218.48209 * 19 18 16 47 47 H 1.09001 * 109.87477 * 97.47468 * 19 18 16 48 48 H 0.97003 * 119.99863 * 180.02562 * 24 23 21 49 49 H 1.09007 * 110.36793 * 142.96932 * 29 20 19 50 50 H 1.09000 * 110.37189 * 265.28916 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1997 2.0318 -1.1663 5 8 2.6512 3.1575 -1.1689 6 6 1.8418 1.3606 -2.4672 7 1 0.8791 0.8595 -2.3655 8 6 2.9193 0.3310 -2.8257 9 7 2.6476 -0.1726 -4.1814 10 6 2.6025 -1.4956 -4.4340 11 6 2.3218 -1.9869 -5.8307 12 8 2.7879 -2.2909 -3.5373 13 6 2.4268 0.8113 -5.2532 14 6 1.3732 1.8174 -4.7764 15 8 1.7637 2.3409 -3.5047 16 6 2.3095 2.0552 1.2678 17 1 2.6066 3.0901 1.0984 18 6 3.3972 1.2855 2.0675 19 6 2.5843 0.1818 2.7767 20 7 1.1875 0.6360 2.8391 21 6 0.1425 -0.0683 3.3751 22 1 -0.8512 0.3547 3.3732 23 6 0.3604 -1.3258 3.9209 24 7 1.5714 -1.8415 3.9228 25 14 -1.0649 -2.2862 4.6526 26 1 -2.0917 -2.5224 3.6062 27 1 -0.5720 -3.5900 5.1650 28 1 -1.6640 -1.5101 5.7679 29 6 1.0982 1.9755 2.2300 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9014 0.8031 -2.7995 36 1 2.8894 -0.4946 -2.1146 37 1 3.0909 -1.6155 -6.5080 38 1 2.3245 -3.0769 -5.8399 39 1 1.3463 -1.6237 -6.1545 40 1 3.3593 1.3318 -5.4714 41 1 2.0712 0.3036 -6.1499 42 1 1.2950 2.6316 -5.4969 43 1 0.4084 1.3184 -4.6849 44 1 3.8755 1.9405 2.7957 45 1 4.1364 0.8488 1.3959 46 1 2.9694 0.0275 3.7846 47 1 2.6472 -0.7470 2.2097 48 1 1.7237 -2.7205 4.3038 49 1 0.1655 2.0785 1.6751 50 1 1.1714 2.7467 2.9968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034027957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:20 Heat of formation + Delta-G solvation = -74.519865 kcal Electronic energy + Delta-G solvation = -32404.309805 eV Core-core repulsion = 28240.001690 eV Total energy + Delta-G solvation = -4164.308115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.03370 -40.95491 -39.59984 -38.70198 -36.31730 -35.89076 -34.41163 -32.93930 -31.88840 -30.83495 -30.60204 -29.39562 -28.46926 -26.42447 -25.87926 -24.25336 -23.63868 -22.10322 -21.93219 -20.53528 -19.92828 -18.89917 -18.75029 -18.28219 -17.68751 -17.47462 -16.93202 -16.67206 -16.59279 -16.25811 -15.86577 -15.74103 -15.49927 -15.17636 -14.69599 -14.63629 -14.52500 -14.13583 -13.98172 -13.80658 -13.69223 -13.59773 -13.34955 -13.07522 -13.00833 -12.84125 -12.81103 -12.75034 -12.57436 -12.34808 -12.07539 -12.01925 -11.98880 -11.81283 -11.52182 -11.40728 -11.35171 -11.00637 -10.73719 -10.57606 -9.79618 -9.70437 -8.79952 -7.78209 -5.11606 1.26754 1.49658 1.50229 1.52806 1.56426 1.62508 1.84778 2.53303 2.77052 3.31113 3.42031 3.42390 3.59264 3.68671 3.72115 3.88402 3.94028 3.97437 4.01528 4.15965 4.24303 4.29360 4.31221 4.44783 4.46462 4.50487 4.53985 4.64978 4.66747 4.71633 4.72303 4.82479 4.86950 4.94412 4.95454 5.04305 5.08026 5.14983 5.19324 5.49255 5.52359 5.57810 5.67328 5.84406 5.93001 6.23613 6.26509 6.37043 7.00701 7.03883 7.16068 7.82137 8.47124 9.31660 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.003759 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.003113 B = 7447.154512 C = 8533.940758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.092 3.908 3 N -0.579 5.579 4 C 0.522 3.478 5 O -0.560 6.560 6 C 0.077 3.923 7 H 0.093 0.907 8 C 0.088 3.912 9 N -0.616 5.616 10 C 0.503 3.497 11 C -0.163 4.163 12 O -0.595 6.595 13 C 0.069 3.931 14 C 0.035 3.965 15 O -0.375 6.375 16 C 0.132 3.868 17 H 0.109 0.891 18 C -0.142 4.142 19 C 0.186 3.814 20 N -0.610 5.610 21 C -0.222 4.222 22 H 0.079 0.921 23 C -0.055 4.055 24 N -0.947 5.947 25 Si 0.964 3.036 26 H -0.278 1.278 27 H -0.300 1.300 28 H -0.283 1.283 29 C 0.125 3.875 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.007 0.993 47 H 0.029 0.971 48 H 0.244 0.756 49 H 0.049 0.951 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 4.917 -23.919 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.030 4.030 3 N -0.310 5.310 4 C 0.309 3.691 5 O -0.438 6.438 6 C 0.015 3.985 7 H 0.111 0.889 8 C -0.036 4.036 9 N -0.351 5.351 10 C 0.295 3.705 11 C -0.222 4.222 12 O -0.476 6.476 13 C -0.052 4.052 14 C -0.041 4.041 15 O -0.293 6.293 16 C 0.028 3.972 17 H 0.127 0.873 18 C -0.181 4.181 19 C 0.061 3.939 20 N -0.337 5.337 21 C -0.351 4.351 22 H 0.097 0.903 23 C -0.248 4.248 24 N -0.596 5.596 25 Si 0.794 3.206 26 H -0.204 1.204 27 H -0.226 1.226 28 H -0.209 1.209 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.107 0.893 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.026 0.974 47 H 0.047 0.953 48 H 0.054 0.946 49 H 0.067 0.933 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.795 5.082 -23.345 23.905 hybrid contribution -0.617 -1.072 1.196 1.720 sum 0.178 4.010 -22.149 22.510 Atomic orbital electron populations 1.22084 0.95208 1.01958 1.01780 1.22051 0.95586 0.81298 1.04047 1.47806 1.63841 1.14523 1.04876 1.20330 0.77869 0.85762 0.85167 1.90651 1.45808 1.19960 1.87415 1.22100 1.00048 0.89437 0.86953 0.88908 1.22032 0.97900 0.97143 0.86496 1.48339 1.71108 1.06577 1.09074 1.21920 0.74728 0.80791 0.93085 1.21990 1.06158 1.03882 0.90143 1.90757 1.51665 1.55393 1.49746 1.22836 1.01089 0.90558 0.90710 1.23463 0.96946 0.99403 0.84305 1.88069 1.89852 1.32734 1.18673 1.22226 0.95713 0.96941 0.82341 0.87343 1.23187 0.97218 0.98651 0.99065 1.20984 0.83238 0.93378 0.96305 1.44610 1.04595 1.15217 1.69231 1.19165 0.88347 0.97339 1.30242 0.90330 1.25382 0.98452 0.98621 1.02394 1.70133 1.20408 1.17409 1.51668 0.85364 0.79168 0.77647 0.78422 1.20445 1.22649 1.20941 1.22025 0.96449 0.87931 0.93646 0.92748 0.92499 0.91795 0.90665 0.88732 0.90626 0.88786 0.86358 0.89260 0.86305 0.89310 0.84030 0.84006 0.91438 0.89567 0.90872 0.97443 0.95314 0.94645 0.93316 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.76 71.98 0.70 -4.60 16 2 C 0.09 3.28 4.89 86.38 0.42 3.71 16 3 N -0.58 -20.05 2.52 -789.65 -1.99 -22.04 16 4 C 0.52 17.66 6.97 87.66 0.61 18.27 16 5 O -0.56 -22.15 15.97 15.47 0.25 -21.90 16 6 C 0.08 2.07 2.37 29.94 0.07 2.14 16 7 H 0.09 2.42 6.03 -2.39 -0.01 2.40 16 8 C 0.09 2.28 5.66 86.35 0.49 2.77 16 9 N -0.62 -11.77 3.02 -817.37 -2.47 -14.23 16 10 C 0.50 10.61 7.82 87.66 0.69 11.29 16 11 C -0.16 -1.44 8.69 71.23 0.62 -0.82 16 12 O -0.60 -19.54 16.56 -3.04 -0.05 -19.59 16 13 C 0.07 0.68 6.54 86.35 0.56 1.24 16 14 C 0.04 0.45 6.98 72.08 0.50 0.95 16 15 O -0.38 -9.30 9.97 -130.48 -1.30 -10.60 16 16 C 0.13 4.77 3.67 46.47 0.17 4.94 16 17 H 0.11 3.82 7.03 -2.39 -0.02 3.81 16 18 C -0.14 -5.27 6.47 31.87 0.21 -5.07 16 19 C 0.19 8.71 4.26 86.73 0.37 9.08 16 20 N -0.61 -28.94 2.09 -692.00 -1.45 -30.39 16 21 C -0.22 -11.58 9.25 84.03 0.78 -10.80 16 22 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 23 C -0.06 -2.99 5.49 84.86 0.47 -2.52 16 24 N -0.95 -54.63 10.31 21.65 0.22 -54.41 16 25 Si 0.96 44.70 29.55 68.60 2.03 46.73 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 27 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 29 C 0.13 4.99 5.96 86.85 0.52 5.51 16 30 H 0.05 1.60 6.68 -2.39 -0.02 1.59 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.53 4.25 -2.39 -0.01 2.52 16 33 H 0.08 2.49 4.42 -2.38 -0.01 2.48 16 34 H 0.09 4.11 3.76 -2.38 -0.01 4.10 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 2.85 4.58 -2.38 -0.01 2.84 16 37 H 0.12 0.39 8.01 -2.39 -0.02 0.37 16 38 H 0.09 0.95 8.12 -2.39 -0.02 0.93 16 39 H 0.12 0.37 7.66 -2.38 -0.02 0.35 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.14 0.17 6.05 -2.39 -0.01 0.15 16 42 H 0.14 0.95 8.14 -2.39 -0.02 0.94 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 45 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.01 0.40 7.51 -2.39 -0.02 0.38 16 47 H 0.03 1.50 5.35 -2.39 -0.01 1.49 16 48 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.05 1.93 6.50 -2.38 -0.02 1.91 16 50 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -75.27 373.30 3.38 -71.89 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.97 Total: 18.46 kcal Atomic # 6 Polarization: 28.91 SS G_CDS: 7.17 Total: 36.09 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -5.68 Total: -121.07 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -1.10 Total: -52.09 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -75.27 3.38 -71.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034027957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.631 kcal (2) G-P(sol) polarization free energy of solvation -75.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds