Wall clock time and date at job start Sat Apr 11 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47218 * 2 1 4 4 C 1.50707 * 109.46763 * 240.00500 * 2 1 3 5 5 O 1.21280 * 119.99727 * 252.25261 * 4 2 1 6 6 N 1.34773 * 120.00095 * 72.24929 * 4 2 1 7 7 C 1.46497 * 120.00242 * 184.96158 * 6 4 2 8 8 C 1.46504 * 120.00033 * 4.96881 * 6 4 2 9 9 H 1.09001 * 110.88618 * 350.75271 * 8 6 4 10 10 C 1.54908 * 111.00474 * 114.63016 * 8 6 4 11 11 N 1.47421 * 104.83134 * 155.08228 * 10 8 6 12 12 C 1.36939 * 125.64868 * 155.83725 * 11 10 8 13 13 H 1.08005 * 120.00149 * 0.02562 * 12 11 10 14 14 C 1.38814 * 120.00250 * 180.02562 * 12 11 10 15 15 N 1.31621 * 119.99731 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00105 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47456 * 60.00017 * 16 14 12 18 18 H 1.48502 * 109.47135 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47371 * 299.99612 * 16 14 12 20 20 C 1.47018 * 108.70338 * 335.87370 * 11 10 8 21 21 C 1.54364 * 107.28805 * 1.09009 * 20 11 10 22 22 H 1.08998 * 110.70648 * 263.79141 * 21 20 11 23 23 O 1.42907 * 110.75307 * 140.50710 * 21 20 11 24 24 N 1.46496 * 109.47379 * 120.00559 * 2 1 3 25 25 C 1.45758 * 117.94748 * 240.02032 * 24 2 1 26 26 C 1.52914 * 110.48593 * 160.92168 * 25 24 2 27 27 C 1.53174 * 108.63074 * 50.75349 * 26 25 24 28 28 C 1.53076 * 108.50882 * 292.40783 * 27 26 25 29 29 C 1.33352 * 117.94667 * 59.99395 * 24 2 1 30 30 O 1.21280 * 118.25006 * 2.22700 * 29 24 2 31 31 H 1.09001 * 109.47071 * 292.90547 * 1 2 3 32 32 H 1.09005 * 109.47508 * 52.90002 * 1 2 3 33 33 H 1.08994 * 109.47558 * 172.90271 * 1 2 3 34 34 H 1.09004 * 109.46979 * 94.16755 * 7 6 4 35 35 H 1.09000 * 109.47403 * 214.17132 * 7 6 4 36 36 H 1.09004 * 109.47115 * 334.17222 * 7 6 4 37 37 H 1.09001 * 110.36882 * 273.92397 * 10 8 6 38 38 H 1.09004 * 110.36603 * 36.24801 * 10 8 6 39 39 H 0.97001 * 120.00088 * 179.97438 * 15 14 12 40 40 H 1.09002 * 109.88022 * 120.47774 * 20 11 10 41 41 H 1.09003 * 109.88440 * 241.48644 * 20 11 10 42 42 H 0.96700 * 114.00154 * 66.48471 * 23 21 20 43 43 H 1.08999 * 109.29531 * 281.23365 * 25 24 2 44 44 H 1.08997 * 109.29530 * 40.81675 * 25 24 2 45 45 H 1.09008 * 109.60345 * 170.50730 * 26 25 24 46 46 H 1.08997 * 109.60658 * 290.82974 * 26 25 24 47 47 H 1.08999 * 109.56847 * 172.68798 * 27 26 25 48 48 H 1.08995 * 109.69295 * 52.20430 * 27 26 25 49 49 H 1.09002 * 109.40233 * 288.84399 * 28 27 26 50 50 H 1.09004 * 109.39689 * 169.01587 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5362 -1.8092 -1.1332 6 7 1.9214 -0.1246 -2.4393 7 6 2.3090 -0.8576 -3.6470 8 6 1.4133 1.2454 -2.5455 9 1 1.0202 1.5894 -1.5888 10 6 2.5093 2.2049 -3.0726 11 7 1.7693 3.3170 -3.6962 12 6 2.2442 4.5882 -3.8795 13 1 3.2422 4.8439 -3.5551 14 6 1.4431 5.5483 -4.4823 15 7 0.2271 5.2366 -4.8781 16 14 2.0907 7.2825 -4.7316 17 1 3.3042 7.2397 -5.5866 18 1 1.0489 8.1100 -5.3913 19 1 2.4338 7.8770 -3.4147 20 6 0.4366 2.8354 -4.0879 21 6 0.3394 1.3555 -3.6599 22 1 0.5802 0.6965 -4.4940 23 8 -0.9595 1.0627 -3.1410 24 7 2.0184 -0.6907 1.1960 25 6 2.8527 0.0603 2.1258 26 6 2.8765 -0.6215 3.4943 27 6 3.2229 -2.1006 3.2981 28 6 2.0612 -2.7791 2.5678 29 6 1.6713 -1.9670 1.3662 30 8 1.0055 -2.5006 0.5043 31 1 -0.3633 0.4000 0.9466 32 1 -0.3634 0.6199 -0.8197 33 1 -0.3634 -1.0197 -0.1270 34 1 1.4314 -1.3415 -4.0757 35 1 2.7324 -0.1637 -4.3731 36 1 3.0517 -1.6133 -3.3907 37 1 3.1212 2.5713 -2.2484 38 1 3.1309 1.7007 -3.8127 39 1 -0.3328 5.9076 -5.2990 40 1 -0.3321 3.4186 -3.5808 41 1 0.3142 2.9205 -5.1677 42 1 -1.6670 1.1175 -3.7979 43 1 3.8681 0.1167 1.7336 44 1 2.4523 1.0681 2.2356 45 1 3.6299 -0.1496 4.1250 46 1 1.8974 -0.5316 3.9647 47 1 3.3716 -2.5727 4.2692 48 1 4.1320 -2.1892 2.7034 49 1 1.2084 -2.8611 3.2416 50 1 2.3671 -3.7752 2.2478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047638712.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:29 Heat of formation + Delta-G solvation = -72.653426 kcal Electronic energy + Delta-G solvation = -32144.998493 eV Core-core repulsion = 27980.771313 eV Total energy + Delta-G solvation = -4164.227180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.03000 -39.41060 -37.82412 -36.41895 -35.17120 -34.69344 -34.59275 -31.80880 -30.86249 -29.58518 -28.51999 -27.49272 -26.66041 -24.82434 -24.48676 -23.89059 -22.22473 -20.74909 -20.45976 -19.45045 -18.28719 -17.50376 -17.17863 -16.74802 -16.27963 -15.98669 -15.49273 -15.29830 -14.89016 -14.74896 -14.42618 -14.31178 -14.10428 -13.87216 -13.67565 -13.28425 -13.13498 -13.01360 -12.76010 -12.51665 -12.17267 -12.10208 -12.02609 -11.80839 -11.68432 -11.56158 -11.44813 -11.29763 -11.27478 -11.20459 -11.09848 -10.90648 -10.85150 -10.23125 -10.07933 -9.90188 -9.59321 -9.35762 -9.30901 -8.76545 -8.57055 -8.29082 -6.99207 -5.83145 -3.18878 2.70212 2.91265 2.95364 3.33673 3.36034 3.39628 3.41178 4.36561 4.43122 4.48701 4.52189 4.56953 4.60971 4.70722 5.02466 5.10584 5.13747 5.18405 5.27857 5.31530 5.35081 5.46416 5.48458 5.50306 5.56312 5.58691 5.64832 5.70537 5.77757 5.79964 5.81082 5.89330 5.93743 5.95604 6.03226 6.08249 6.36225 6.38552 6.48816 6.58472 6.79725 7.28793 7.40073 7.54679 7.63379 7.69121 8.09853 8.11185 8.33554 8.53083 9.07141 9.67288 10.29949 11.27901 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.003190 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.264963 B = 8774.361717 C = 9492.390010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 H 0.106 0.894 4 C 0.515 3.485 5 O -0.523 6.523 6 N -0.601 5.601 7 C 0.085 3.915 8 C 0.124 3.876 9 H 0.108 0.892 10 C 0.129 3.871 11 N -0.599 5.599 12 C -0.234 4.234 13 H 0.080 0.920 14 C -0.004 4.004 15 N -0.921 5.921 16 Si 0.915 3.085 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.152 3.848 21 C 0.067 3.933 22 H 0.060 0.940 23 O -0.562 6.562 24 N -0.595 5.595 25 C 0.112 3.888 26 C -0.133 4.133 27 C -0.124 4.124 28 C -0.130 4.130 29 C 0.521 3.479 30 O -0.525 6.525 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.028 0.972 39 H 0.254 0.746 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.377 0.623 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.094 0.906 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -11.252 13.902 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 H 0.124 0.876 4 C 0.302 3.698 5 O -0.398 6.398 6 N -0.335 5.335 7 C -0.057 4.057 8 C 0.019 3.981 9 H 0.125 0.875 10 C 0.001 3.999 11 N -0.327 5.327 12 C -0.361 4.361 13 H 0.098 0.902 14 C -0.201 4.201 15 N -0.568 5.568 16 Si 0.745 3.255 17 H -0.211 1.211 18 H -0.215 1.215 19 H -0.210 1.210 20 C 0.026 3.974 21 C 0.006 3.994 22 H 0.077 0.923 23 O -0.367 6.367 24 N -0.329 5.329 25 C -0.011 4.011 26 C -0.171 4.171 27 C -0.161 4.161 28 C -0.170 4.170 29 C 0.309 3.691 30 O -0.400 6.400 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.224 0.776 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.113 0.887 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.085 -12.048 13.980 18.711 hybrid contribution 0.046 1.255 -0.832 1.506 sum 3.131 -10.793 13.147 17.296 Atomic orbital electron populations 1.22224 0.91701 1.05195 1.03282 1.20975 0.96935 0.96106 0.84078 0.87587 1.20607 0.78586 0.86180 0.84474 1.90660 1.43474 1.19906 1.85750 1.47678 1.64763 1.14734 1.06296 1.21569 1.00375 0.96943 0.86840 1.22608 0.94381 0.80620 1.00481 0.87470 1.21830 0.93144 0.88852 0.96061 1.44228 1.12009 1.06648 1.69792 1.19013 0.98555 0.84472 1.34109 0.90199 1.24815 0.96254 0.98462 1.00574 1.69918 1.08116 1.33310 1.45481 0.86160 0.77644 0.83796 0.77901 1.21082 1.21537 1.21035 1.21859 0.88713 0.87379 0.99401 1.23522 0.82618 0.98551 0.94689 0.92262 1.86400 1.16747 1.92931 1.40642 1.47136 1.51925 1.11662 1.22218 1.21450 0.94986 0.95537 0.89114 1.21833 1.03091 0.96029 0.96152 1.21624 0.98340 0.95238 1.00928 1.21627 0.99913 0.99940 0.95547 1.19923 0.79993 0.81217 0.87959 1.90707 1.38652 1.68496 1.42178 0.92027 0.89233 0.90054 0.93071 0.91018 0.90624 0.93438 0.95446 0.93520 0.92101 0.93378 0.77622 0.91747 0.90455 0.89756 0.90871 0.90765 0.91055 0.88745 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 8.65 37.16 0.32 -2.15 16 2 C 0.13 1.86 2.15 -69.08 -0.15 1.71 16 3 H 0.11 1.40 6.71 -51.93 -0.35 1.05 16 4 C 0.52 9.05 6.45 -10.98 -0.07 8.98 16 5 O -0.52 -10.67 13.26 -18.15 -0.24 -10.91 16 6 N -0.60 -10.04 2.91 -171.48 -0.50 -10.54 16 7 C 0.09 1.30 9.02 59.85 0.54 1.84 16 8 C 0.12 2.15 2.41 -65.78 -0.16 1.99 16 9 H 0.11 1.85 4.55 -51.93 -0.24 1.61 16 10 C 0.13 2.50 6.83 -2.53 -0.02 2.49 16 11 N -0.60 -14.32 3.39 -170.05 -0.58 -14.89 16 12 C -0.23 -6.16 10.28 -15.06 -0.15 -6.31 16 13 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 14 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 15 N -0.92 -25.69 10.31 55.49 0.57 -25.12 16 16 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 C 0.15 3.43 5.15 -3.05 -0.02 3.41 16 21 C 0.07 1.20 3.84 -24.88 -0.10 1.10 16 22 H 0.06 1.02 6.76 -51.93 -0.35 0.67 16 23 O -0.56 -9.31 12.25 -35.23 -0.43 -9.75 16 24 N -0.59 -7.80 2.69 -168.70 -0.45 -8.25 16 25 C 0.11 1.02 6.25 -4.49 -0.03 1.00 16 26 C -0.13 -0.90 6.02 -26.69 -0.16 -1.06 16 27 C -0.12 -0.92 6.02 -26.60 -0.16 -1.08 16 28 C -0.13 -1.31 6.04 -28.10 -0.17 -1.48 16 29 C 0.52 7.60 6.20 -11.87 -0.07 7.53 16 30 O -0.53 -9.95 12.43 -18.15 -0.23 -10.17 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.42 5.14 -51.93 -0.27 1.15 16 33 H 0.08 1.41 6.20 -51.93 -0.32 1.08 16 34 H 0.05 0.76 7.98 -51.93 -0.41 0.34 16 35 H 0.07 1.03 6.70 -51.93 -0.35 0.68 16 36 H 0.08 1.17 7.24 -51.93 -0.38 0.80 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 39 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.06 1.54 7.30 -51.93 -0.38 1.16 16 41 H 0.05 1.20 7.50 -51.93 -0.39 0.81 16 42 H 0.38 4.88 9.12 45.56 0.42 5.29 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 45 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 46 H 0.07 0.48 8.13 -51.93 -0.42 0.05 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 49 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -34.41 378.21 -8.80 -43.20 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.13 Total: 6.83 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: -0.49 Total: 17.75 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.96 Total: -58.80 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.90 Total: -30.83 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.41 -8.80 -43.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047638712.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.450 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds