Wall clock time and date at job start Sat Apr 11 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 O 1.21279 * 120.00072 * 119.99863 * 4 2 1 6 6 N 1.34777 * 119.99762 * 300.00068 * 4 2 1 7 7 C 1.46504 * 119.99858 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00258 * 180.02562 * 6 4 2 9 9 H 1.09007 * 110.88062 * 0.69446 * 8 6 4 10 10 C 1.54912 * 111.00793 * 124.57566 * 8 6 4 11 11 N 1.47421 * 104.83116 * 155.08688 * 10 8 6 12 12 C 1.36936 * 125.65132 * 155.83939 * 11 10 8 13 13 H 1.08005 * 119.99641 * 0.02562 * 12 11 10 14 14 C 1.38808 * 120.00269 * 179.97438 * 12 11 10 15 15 N 1.31615 * 120.00101 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00005 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46948 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47067 * 120.00258 * 16 14 12 19 19 H 1.48505 * 109.46882 * 240.00320 * 16 14 12 20 20 C 1.47030 * 108.70421 * 335.87108 * 11 10 8 21 21 C 1.54371 * 107.28672 * 1.09620 * 20 11 10 22 22 H 1.09001 * 110.70450 * 263.79631 * 21 20 11 23 23 O 1.42896 * 110.75634 * 140.50290 * 21 20 11 24 24 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 25 25 C 1.45759 * 117.94650 * 119.73825 * 24 2 1 26 26 C 1.53099 * 110.38705 * 160.74560 * 25 24 2 27 27 C 1.53345 * 108.52984 * 51.11811 * 26 25 24 28 28 C 1.53068 * 108.42301 * 292.31000 * 27 26 25 29 29 C 1.33353 * 117.94935 * 300.00567 * 24 2 1 30 30 O 1.21274 * 118.24394 * 2.24065 * 29 24 2 31 31 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 32 32 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46944 * 90.00712 * 7 6 4 35 35 H 1.09001 * 109.47272 * 209.99997 * 7 6 4 36 36 H 1.08996 * 109.47264 * 330.00264 * 7 6 4 37 37 H 1.08994 * 110.36548 * 273.92502 * 10 8 6 38 38 H 1.09002 * 110.36124 * 36.24913 * 10 8 6 39 39 H 0.97001 * 119.99996 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.87809 * 120.47648 * 20 11 10 41 41 H 1.08996 * 109.88288 * 241.49196 * 20 11 10 42 42 H 0.96706 * 113.99947 * 66.48194 * 23 21 20 43 43 H 1.09005 * 109.30181 * 281.24112 * 25 24 2 44 44 H 1.09001 * 109.30058 * 40.61823 * 25 24 2 45 45 H 1.08995 * 109.81117 * 291.32828 * 26 25 24 46 46 H 1.09001 * 109.67823 * 170.82407 * 26 25 24 47 47 H 1.08994 * 109.67697 * 172.57178 * 27 26 25 48 48 H 1.09008 * 109.70430 * 52.05605 * 27 26 25 49 49 H 1.09003 * 109.40035 * 288.76964 * 28 27 26 50 50 H 1.08999 * 109.33248 * 168.98792 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 0.8649 0.9415 2.5890 8 6 2.1955 -0.9402 3.6508 9 1 2.8155 -1.7949 3.3801 10 6 2.9656 0.0331 4.5778 11 7 2.8572 -0.5613 5.9225 12 6 3.7241 -0.3493 6.9611 13 1 4.5751 0.3026 6.8297 14 6 3.5085 -0.9714 8.1831 15 7 2.4712 -1.7655 8.3435 16 14 4.6915 -0.6827 9.5997 17 1 5.7676 0.2438 9.1650 18 1 3.9572 -0.0855 10.7440 19 1 5.2899 -1.9764 10.0164 20 6 1.6645 -1.4202 5.9636 21 6 1.0177 -1.3742 4.5627 22 1 0.2151 -0.6373 4.5328 23 8 0.5350 -2.6651 4.1852 24 7 2.0183 -0.6907 -1.1961 25 6 2.8482 0.0620 -2.1285 26 6 3.6413 -0.8916 -3.0261 27 6 2.6685 -1.9063 -3.6389 28 6 2.1401 -2.8068 -2.5197 29 6 1.6713 -1.9670 -1.3663 30 8 0.9375 -2.4765 -0.5461 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.1832 0.6439 2.6222 35 1 1.1227 1.4667 3.5086 36 1 1.0288 1.6002 1.7362 37 1 4.0107 0.0983 4.2750 38 1 2.5025 1.0196 4.5606 39 1 2.3208 -2.2005 9.1973 40 1 1.9527 -2.4433 6.2047 41 1 0.9642 -1.0466 6.7106 42 1 -0.2020 -2.9828 4.7247 43 1 2.2122 0.6974 -2.7449 44 1 3.5428 0.6879 -1.5683 45 1 4.3924 -1.4160 -2.4354 46 1 4.1294 -0.3272 -3.8206 47 1 3.1886 -2.5109 -4.3818 48 1 1.8377 -1.3807 -4.1100 49 1 2.9360 -3.4715 -2.1836 50 1 1.3076 -3.4008 -2.8970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047638713.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:31 Heat of formation + Delta-G solvation = -67.106932 kcal Electronic energy + Delta-G solvation = -31838.785087 eV Core-core repulsion = 27674.798421 eV Total energy + Delta-G solvation = -4163.986666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10075 -39.41051 -37.65415 -36.50459 -35.17529 -34.90029 -34.55633 -31.99136 -30.71830 -29.63974 -28.38411 -27.25225 -26.77523 -24.93036 -24.62041 -23.91800 -22.56887 -20.58056 -20.36144 -19.07357 -18.40100 -17.47990 -17.08068 -16.79448 -16.56302 -15.97764 -15.81760 -15.27910 -14.96264 -14.62775 -14.42479 -14.21901 -14.07069 -13.86189 -13.69708 -13.42952 -13.31095 -13.02492 -12.68880 -12.56790 -12.27882 -12.24511 -12.06586 -11.92123 -11.79749 -11.49288 -11.35222 -11.27358 -11.25797 -11.18031 -11.15871 -10.84369 -10.77255 -10.10525 -9.87419 -9.80128 -9.64110 -9.43201 -9.20450 -8.70642 -8.68142 -8.25054 -6.89604 -5.74855 -3.10257 2.60049 2.87048 2.92519 3.32317 3.39083 3.44429 3.46904 4.36571 4.41805 4.44035 4.46080 4.56087 4.60545 4.80468 4.84288 4.95856 5.10112 5.12934 5.19040 5.21032 5.30787 5.39505 5.44023 5.48009 5.51287 5.55042 5.59409 5.61786 5.65908 5.70011 5.73000 5.80562 5.89705 5.90136 6.08569 6.17611 6.21317 6.36789 6.51046 6.65926 6.97074 7.39249 7.43328 7.50863 7.67883 7.76527 8.18647 8.26743 8.30489 8.51359 9.15523 9.75833 10.39390 11.36377 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.002785 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.594715 B =10052.667732 C =10272.516977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.129 3.871 3 H 0.107 0.893 4 C 0.513 3.487 5 O -0.520 6.520 6 N -0.600 5.600 7 C 0.070 3.930 8 C 0.137 3.863 9 H 0.112 0.888 10 C 0.132 3.868 11 N -0.599 5.599 12 C -0.230 4.230 13 H 0.081 0.919 14 C -0.007 4.007 15 N -0.921 5.921 16 Si 0.915 3.085 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.290 1.290 20 C 0.152 3.848 21 C 0.067 3.933 22 H 0.054 0.946 23 O -0.557 6.557 24 N -0.593 5.593 25 C 0.116 3.884 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.132 4.132 29 C 0.524 3.476 30 O -0.529 6.529 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.026 0.974 39 H 0.253 0.747 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.372 0.628 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.099 0.901 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 7.112 -24.300 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.021 3.979 3 H 0.124 0.876 4 C 0.299 3.701 5 O -0.395 6.395 6 N -0.334 5.334 7 C -0.073 4.073 8 C 0.033 3.967 9 H 0.130 0.870 10 C 0.004 3.996 11 N -0.327 5.327 12 C -0.358 4.358 13 H 0.099 0.901 14 C -0.203 4.203 15 N -0.568 5.568 16 Si 0.745 3.255 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.217 1.217 20 C 0.027 3.973 21 C 0.006 3.994 22 H 0.072 0.928 23 O -0.361 6.361 24 N -0.328 5.328 25 C -0.007 4.007 26 C -0.174 4.174 27 C -0.160 4.160 28 C -0.172 4.172 29 C 0.313 3.687 30 O -0.404 6.404 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.218 0.782 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.117 0.883 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.567 6.265 -24.192 25.243 hybrid contribution 0.164 0.246 1.317 1.350 sum -3.403 6.512 -22.875 24.026 Atomic orbital electron populations 1.22444 0.92545 1.05756 1.02813 1.20913 0.96516 0.95999 0.84449 0.87555 1.20588 0.80442 0.84763 0.84303 1.90673 1.37690 1.25303 1.85806 1.47616 1.51286 1.28868 1.05620 1.21998 0.94758 0.87358 1.03213 1.22332 0.95122 0.96248 0.83007 0.86976 1.21783 0.97726 0.94165 0.85898 1.44249 1.27969 1.53319 1.07141 1.19111 1.03938 1.23879 0.88860 0.90129 1.24831 0.98331 0.99270 0.97918 1.69953 1.28958 1.33848 1.24075 0.86002 0.79925 0.77402 0.82153 1.20440 1.21711 1.21659 1.21851 0.88604 0.96901 0.89959 1.23515 0.94945 0.84250 0.96677 0.92847 1.86552 1.54593 1.34573 1.60423 1.47070 1.51866 1.11685 1.22149 1.21446 0.93445 0.94240 0.91545 1.21906 0.98347 0.97864 0.99281 1.21655 0.99295 0.97569 0.97471 1.21644 1.03308 0.98373 0.93889 1.19959 0.80423 0.81232 0.87098 1.90711 1.36274 1.69697 1.43761 0.92034 0.90284 0.89180 0.92343 0.90083 0.91295 0.93509 0.95647 0.93683 0.92260 0.93433 0.78206 0.91657 0.90838 0.90589 0.89821 0.90657 0.91233 0.88253 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 8.72 37.16 0.32 -1.69 16 2 C 0.13 1.59 2.22 -69.08 -0.15 1.44 16 3 H 0.11 0.96 7.05 -51.93 -0.37 0.59 16 4 C 0.51 8.89 6.33 -10.98 -0.07 8.82 16 5 O -0.52 -11.35 13.94 -15.20 -0.21 -11.56 16 6 N -0.60 -9.98 2.91 -171.47 -0.50 -10.48 16 7 C 0.07 0.83 7.63 59.85 0.46 1.29 16 8 C 0.14 2.81 3.18 -65.78 -0.21 2.60 16 9 H 0.11 2.73 7.01 -51.92 -0.36 2.36 16 10 C 0.13 2.81 6.80 -2.53 -0.02 2.79 16 11 N -0.60 -15.56 3.39 -170.04 -0.58 -16.14 16 12 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 13 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 14 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 15 N -0.92 -27.16 10.31 55.49 0.57 -26.59 16 16 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 C 0.15 3.79 5.16 -3.03 -0.02 3.77 16 21 C 0.07 1.37 3.91 -24.87 -0.10 1.27 16 22 H 0.05 0.99 7.17 -51.93 -0.37 0.62 16 23 O -0.56 -11.51 13.39 -35.23 -0.47 -11.98 16 24 N -0.59 -7.02 2.61 -168.58 -0.44 -7.46 16 25 C 0.12 0.88 6.26 -4.39 -0.03 0.85 16 26 C -0.14 -0.88 6.03 -26.50 -0.16 -1.04 16 27 C -0.12 -0.80 6.03 -26.52 -0.16 -0.96 16 28 C -0.13 -1.33 6.03 -28.10 -0.17 -1.50 16 29 C 0.52 7.45 6.12 -11.87 -0.07 7.37 16 30 O -0.53 -9.98 12.86 -15.20 -0.20 -10.17 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.79 4.53 -51.93 -0.24 0.55 16 33 H 0.09 1.36 5.84 -51.93 -0.30 1.05 16 34 H 0.06 0.65 6.89 -51.93 -0.36 0.29 16 35 H 0.08 0.99 6.10 -51.93 -0.32 0.67 16 36 H 0.07 0.59 6.01 -51.93 -0.31 0.28 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.03 0.50 6.09 -51.93 -0.32 0.19 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.06 1.67 7.30 -51.93 -0.38 1.30 16 41 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 42 H 0.37 6.01 9.12 45.56 0.42 6.42 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.51 8.03 -51.93 -0.42 0.10 16 45 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.41 8.13 -51.92 -0.42 -0.02 16 49 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -38.36 378.46 -8.83 -47.18 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.06 Total: 6.21 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: -0.62 Total: 18.10 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.94 Total: -60.67 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.88 Total: -33.71 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.36 -8.83 -47.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047638713.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.926 kcal (2) G-P(sol) polarization free energy of solvation -38.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds