Wall clock time and date at job start Sat Apr 11 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 O 1.21279 * 120.00072 * 119.99863 * 4 2 1 6 6 N 1.34777 * 119.99762 * 300.00068 * 4 2 1 7 7 C 1.46504 * 119.99858 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00258 * 180.02562 * 6 4 2 9 9 H 1.09007 * 110.88062 * 0.69446 * 8 6 4 10 10 C 1.54912 * 111.00793 * 124.57566 * 8 6 4 11 11 N 1.47421 * 104.83116 * 155.08688 * 10 8 6 12 12 C 1.36936 * 125.65132 * 155.83939 * 11 10 8 13 13 H 1.08005 * 119.99641 * 0.02562 * 12 11 10 14 14 C 1.38808 * 120.00269 * 179.97438 * 12 11 10 15 15 N 1.31615 * 120.00101 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00005 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46948 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47067 * 120.00258 * 16 14 12 19 19 H 1.48505 * 109.46882 * 240.00320 * 16 14 12 20 20 C 1.47030 * 108.70421 * 335.87108 * 11 10 8 21 21 C 1.54371 * 107.28672 * 1.09620 * 20 11 10 22 22 H 1.09001 * 110.70450 * 263.79631 * 21 20 11 23 23 O 1.42896 * 110.75634 * 140.50290 * 21 20 11 24 24 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 25 25 C 1.45759 * 117.94650 * 119.73825 * 24 2 1 26 26 C 1.53099 * 110.38705 * 160.74560 * 25 24 2 27 27 C 1.53345 * 108.52984 * 51.11811 * 26 25 24 28 28 C 1.53068 * 108.42301 * 292.31000 * 27 26 25 29 29 C 1.33353 * 117.94935 * 300.00567 * 24 2 1 30 30 O 1.21274 * 118.24394 * 2.24065 * 29 24 2 31 31 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 32 32 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46944 * 90.00712 * 7 6 4 35 35 H 1.09001 * 109.47272 * 209.99997 * 7 6 4 36 36 H 1.08996 * 109.47264 * 330.00264 * 7 6 4 37 37 H 1.08994 * 110.36548 * 273.92502 * 10 8 6 38 38 H 1.09002 * 110.36124 * 36.24913 * 10 8 6 39 39 H 0.97001 * 119.99996 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.87809 * 120.47648 * 20 11 10 41 41 H 1.08996 * 109.88288 * 241.49196 * 20 11 10 42 42 H 0.96706 * 113.99947 * 66.48194 * 23 21 20 43 43 H 1.09005 * 109.30181 * 281.24112 * 25 24 2 44 44 H 1.09001 * 109.30058 * 40.61823 * 25 24 2 45 45 H 1.08995 * 109.81117 * 291.32828 * 26 25 24 46 46 H 1.09001 * 109.67823 * 170.82407 * 26 25 24 47 47 H 1.08994 * 109.67697 * 172.57178 * 27 26 25 48 48 H 1.09008 * 109.70430 * 52.05605 * 27 26 25 49 49 H 1.09003 * 109.40035 * 288.76964 * 28 27 26 50 50 H 1.08999 * 109.33248 * 168.98792 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 0.8649 0.9415 2.5890 8 6 2.1955 -0.9402 3.6508 9 1 2.8155 -1.7949 3.3801 10 6 2.9656 0.0331 4.5778 11 7 2.8572 -0.5613 5.9225 12 6 3.7241 -0.3493 6.9611 13 1 4.5751 0.3026 6.8297 14 6 3.5085 -0.9714 8.1831 15 7 2.4712 -1.7655 8.3435 16 14 4.6915 -0.6827 9.5997 17 1 5.7676 0.2438 9.1650 18 1 3.9572 -0.0855 10.7440 19 1 5.2899 -1.9764 10.0164 20 6 1.6645 -1.4202 5.9636 21 6 1.0177 -1.3742 4.5627 22 1 0.2151 -0.6373 4.5328 23 8 0.5350 -2.6651 4.1852 24 7 2.0183 -0.6907 -1.1961 25 6 2.8482 0.0620 -2.1285 26 6 3.6413 -0.8916 -3.0261 27 6 2.6685 -1.9063 -3.6389 28 6 2.1401 -2.8068 -2.5197 29 6 1.6713 -1.9670 -1.3663 30 8 0.9375 -2.4765 -0.5461 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.1832 0.6439 2.6222 35 1 1.1227 1.4667 3.5086 36 1 1.0288 1.6002 1.7362 37 1 4.0107 0.0983 4.2750 38 1 2.5025 1.0196 4.5606 39 1 2.3208 -2.2005 9.1973 40 1 1.9527 -2.4433 6.2047 41 1 0.9642 -1.0466 6.7106 42 1 -0.2020 -2.9828 4.7247 43 1 2.2122 0.6974 -2.7449 44 1 3.5428 0.6879 -1.5683 45 1 4.3924 -1.4160 -2.4354 46 1 4.1294 -0.3272 -3.8206 47 1 3.1886 -2.5109 -4.3818 48 1 1.8377 -1.3807 -4.1100 49 1 2.9360 -3.4715 -2.1836 50 1 1.3076 -3.4008 -2.8970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047638713.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:30 Heat of formation + Delta-G solvation = -96.646190 kcal Electronic energy + Delta-G solvation = -31840.066006 eV Core-core repulsion = 27674.798421 eV Total energy + Delta-G solvation = -4165.267584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.15454 -40.75014 -39.24998 -37.40937 -36.78764 -36.43256 -35.60658 -33.86773 -31.77898 -30.49202 -30.10525 -28.92731 -27.99859 -26.52761 -25.50723 -25.06625 -23.51111 -22.32648 -21.84829 -20.43529 -19.29208 -19.03851 -18.75508 -18.00437 -17.85011 -17.42431 -16.83100 -16.61815 -16.24112 -16.19699 -15.82200 -15.37407 -15.06423 -14.92724 -14.75877 -14.57238 -14.48885 -14.35349 -14.19409 -14.05422 -13.75600 -13.40259 -13.28609 -13.19957 -13.04204 -12.92039 -12.78425 -12.67234 -12.61652 -12.41214 -12.05465 -11.96601 -11.89440 -11.85297 -11.77182 -11.57551 -11.07382 -10.81266 -10.77602 -10.45215 -9.72254 -9.62640 -8.98112 -7.90095 -5.28708 1.44206 1.46455 1.51508 1.56769 1.68235 1.94609 2.15861 2.46589 3.10337 3.30992 3.46594 3.55616 3.68824 3.82404 3.85691 3.90621 3.95318 4.00579 4.02831 4.09966 4.11770 4.23789 4.40329 4.47208 4.52569 4.54543 4.58740 4.62769 4.68777 4.78652 4.80749 4.87553 4.92382 4.95875 5.03302 5.08068 5.14264 5.30499 5.33787 5.36653 5.39175 5.46762 5.56613 5.62035 6.09652 6.41124 6.54097 6.80032 7.00634 7.16721 7.34077 7.66210 8.29509 9.19953 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021590 B = 0.002785 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.594715 B =10052.667732 C =10272.516977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 H 0.153 0.847 4 C 0.502 3.498 5 O -0.578 6.578 6 N -0.599 5.599 7 C 0.059 3.941 8 C 0.148 3.852 9 H 0.064 0.936 10 C 0.136 3.864 11 N -0.621 5.621 12 C -0.245 4.245 13 H 0.088 0.912 14 C -0.066 4.066 15 N -0.951 5.951 16 Si 0.984 3.016 17 H -0.263 1.263 18 H -0.287 1.287 19 H -0.296 1.296 20 C 0.166 3.834 21 C 0.083 3.917 22 H 0.086 0.914 23 O -0.575 6.575 24 N -0.592 5.592 25 C 0.105 3.895 26 C -0.135 4.135 27 C -0.113 4.113 28 C -0.133 4.133 29 C 0.511 3.489 30 O -0.588 6.588 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.041 0.959 38 H 0.060 0.940 39 H 0.248 0.752 40 H 0.013 0.987 41 H 0.027 0.973 42 H 0.390 0.610 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.116 0.884 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 10.695 -26.835 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.024 3.976 3 H 0.170 0.830 4 C 0.290 3.710 5 O -0.456 6.456 6 N -0.332 5.332 7 C -0.082 4.082 8 C 0.042 3.958 9 H 0.082 0.918 10 C 0.010 3.990 11 N -0.349 5.349 12 C -0.373 4.373 13 H 0.106 0.894 14 C -0.259 4.259 15 N -0.600 5.600 16 Si 0.812 3.188 17 H -0.187 1.187 18 H -0.214 1.214 19 H -0.223 1.223 20 C 0.040 3.960 21 C 0.023 3.977 22 H 0.104 0.896 23 O -0.381 6.381 24 N -0.324 5.324 25 C -0.016 4.016 26 C -0.173 4.173 27 C -0.150 4.150 28 C -0.173 4.173 29 C 0.301 3.699 30 O -0.468 6.468 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.045 0.955 42 H 0.239 0.761 43 H 0.118 0.882 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.135 0.865 47 H 0.112 0.888 48 H 0.103 0.897 49 H 0.105 0.895 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.666 9.928 -26.782 28.797 hybrid contribution 0.204 -0.892 2.065 2.258 sum -3.462 9.036 -24.717 26.544 Atomic orbital electron populations 1.22380 0.91507 1.03724 1.05098 1.21113 0.97209 0.97190 0.82106 0.82972 1.21689 0.79340 0.84288 0.85674 1.90647 1.40319 1.27990 1.86673 1.47682 1.51522 1.29820 1.04143 1.22392 0.94508 0.85942 1.05325 1.21798 0.94390 0.95034 0.84557 0.91797 1.21891 0.97933 0.95327 0.83819 1.44525 1.28034 1.53783 1.08541 1.19525 1.04462 1.23716 0.89640 0.89387 1.25732 1.00162 0.99367 1.00598 1.70171 1.30667 1.34854 1.24291 0.84935 0.78120 0.77080 0.78708 1.18677 1.21386 1.22291 1.21564 0.88234 0.94063 0.92169 1.23350 0.95561 0.84966 0.93837 0.89600 1.86528 1.55665 1.34984 1.60957 1.47273 1.51540 1.11302 1.22320 1.21855 0.93885 0.94402 0.91442 1.21943 0.97755 0.97854 0.99723 1.21651 0.99887 0.97224 0.96238 1.21681 1.03066 0.98519 0.94012 1.20692 0.79676 0.82192 0.87368 1.90684 1.39031 1.71132 1.45989 0.88995 0.88655 0.93339 0.91077 0.89968 0.86904 0.94067 0.92298 0.94245 0.96889 0.95521 0.76090 0.88234 0.89869 0.92881 0.86525 0.88783 0.89658 0.89534 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 8.72 71.98 0.63 -2.74 16 2 C 0.13 2.89 2.22 44.25 0.10 2.99 16 3 H 0.15 1.92 7.05 -2.39 -0.02 1.91 16 4 C 0.50 17.19 6.33 87.66 0.56 17.75 16 5 O -0.58 -26.38 13.94 16.83 0.23 -26.15 16 6 N -0.60 -19.25 2.91 -814.81 -2.37 -21.62 16 7 C 0.06 1.19 7.63 127.77 0.98 2.17 16 8 C 0.15 6.19 3.18 46.38 0.15 6.34 16 9 H 0.06 3.31 7.01 -2.38 -0.02 3.29 16 10 C 0.14 5.80 6.80 86.86 0.59 6.40 16 11 N -0.62 -32.98 3.39 -691.89 -2.35 -35.33 16 12 C -0.24 -13.95 10.28 84.03 0.86 -13.08 16 13 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 14 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 15 N -0.95 -58.12 10.31 21.65 0.22 -57.89 16 16 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 20 C 0.17 8.58 5.16 86.74 0.45 9.03 16 21 C 0.08 3.48 3.91 31.80 0.12 3.60 16 22 H 0.09 3.05 7.17 -2.39 -0.02 3.03 16 23 O -0.57 -24.56 13.39 -148.98 -1.99 -26.56 16 24 N -0.59 -12.90 2.61 -806.45 -2.10 -15.00 16 25 C 0.11 1.20 6.26 86.55 0.54 1.74 16 26 C -0.14 -1.36 6.03 30.74 0.19 -1.17 16 27 C -0.11 -1.18 6.03 30.73 0.19 -1.00 16 28 C -0.13 -2.68 6.03 29.71 0.18 -2.50 16 29 C 0.51 14.63 6.12 87.71 0.54 15.16 16 30 O -0.59 -23.31 12.86 16.84 0.22 -23.09 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.52 4.53 -2.39 -0.01 1.51 16 33 H 0.05 1.43 5.84 -2.38 -0.01 1.42 16 34 H 0.07 1.30 6.89 -2.39 -0.02 1.28 16 35 H 0.08 1.67 6.10 -2.39 -0.01 1.66 16 36 H 0.11 1.30 6.01 -2.39 -0.01 1.28 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 2.16 6.09 -2.39 -0.01 2.15 16 39 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.01 0.78 7.30 -2.39 -0.02 0.76 16 41 H 0.03 1.47 7.50 -2.39 -0.02 1.45 16 42 H 0.39 13.00 9.12 -74.05 -0.68 12.32 16 43 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.08 0.82 8.03 -2.39 -0.02 0.80 16 45 H 0.05 0.79 8.12 -2.39 -0.02 0.77 16 46 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.08 0.67 8.13 -2.38 -0.02 0.65 16 49 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -92.13 378.46 0.70 -91.44 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.29 Total: 24.55 kcal Atomic # 6 Polarization: 34.84 SS G_CDS: 6.52 Total: 41.37 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -6.60 Total: -129.85 kcal Atomic # 8 Polarization: -74.25 SS G_CDS: -1.54 Total: -75.79 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -92.13 0.70 -91.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047638713.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.208 kcal (2) G-P(sol) polarization free energy of solvation -92.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds