Wall clock time and date at job start Sat Apr 11 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46907 * 109.46798 * 2 1 4 4 C 1.47009 * 111.00139 * 46.36459 * 3 2 1 5 5 C 1.53094 * 109.25627 * 182.39263 * 4 3 2 6 6 O 1.43020 * 109.26139 * 303.14678 * 5 4 3 7 7 C 1.43019 * 113.73339 * 58.67352 * 6 5 4 8 8 C 1.47011 * 110.99703 * 170.00063 * 3 2 1 9 9 H 1.09003 * 109.54265 * 297.56104 * 8 3 2 10 10 C 1.50706 * 109.51056 * 57.67329 * 8 3 2 11 11 O 1.21275 * 119.99971 * 26.29105 * 10 8 3 12 12 N 1.34777 * 119.99769 * 206.29817 * 10 8 3 13 13 C 1.47121 * 121.05822 * 354.81386 * 12 10 8 14 14 C 1.53229 * 108.72943 * 127.77404 * 13 12 10 15 15 O 1.43110 * 109.33935 * 54.12815 * 14 13 12 16 16 C 1.42490 * 113.97236 * 300.03680 * 15 14 13 17 17 C 1.53464 * 113.76222 * 286.82697 * 16 15 14 18 18 N 1.47671 * 85.97198 * 268.71116 * 17 16 15 19 19 C 1.36933 * 134.46124 * 155.70999 * 18 17 16 20 20 H 1.07997 * 120.00254 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99818 * 0.02562 * 19 18 17 22 22 N 1.31620 * 119.99850 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47212 * 59.99679 * 23 21 19 25 25 H 1.48501 * 109.47054 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46779 * 299.99705 * 23 21 19 27 27 C 1.47673 * 91.08584 * 335.71197 * 18 17 16 28 28 C 1.47349 * 121.05078 * 174.81108 * 12 10 8 29 29 H 1.08996 * 109.47148 * 60.00376 * 1 2 3 30 30 H 1.08996 * 109.46521 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46908 * 300.00263 * 1 2 3 32 32 H 1.08998 * 109.47351 * 240.00027 * 2 1 3 33 33 H 1.08996 * 109.47148 * 119.99624 * 2 1 3 34 34 H 1.09001 * 109.50840 * 62.45795 * 4 3 2 35 35 H 1.08997 * 109.50806 * 302.32838 * 4 3 2 36 36 H 1.09003 * 109.50576 * 183.21416 * 5 4 3 37 37 H 1.09000 * 109.54786 * 63.10713 * 5 4 3 38 38 H 1.08992 * 109.50528 * 181.39756 * 7 6 5 39 39 H 1.08998 * 109.54213 * 61.28644 * 7 6 5 40 40 H 1.09001 * 109.59686 * 8.00161 * 13 12 10 41 41 H 1.09000 * 109.59274 * 247.54571 * 13 12 10 42 42 H 1.08999 * 109.49166 * 294.17264 * 14 13 12 43 43 H 1.08996 * 109.49517 * 174.08687 * 14 13 12 44 44 H 1.09004 * 113.79505 * 22.97121 * 17 16 15 45 45 H 1.08994 * 113.79454 * 154.44832 * 17 16 15 46 46 H 0.96996 * 119.99834 * 180.02562 * 22 21 19 47 47 H 1.09001 * 113.78957 * 270.02916 * 27 18 17 48 48 H 1.09001 * 113.90019 * 138.57306 * 27 18 17 49 49 H 1.08998 * 109.73998 * 108.75947 * 28 12 10 50 50 H 1.08997 * 109.78520 * 348.06066 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.3023 2.1975 0.9933 5 6 1.8008 3.6430 0.9182 6 8 3.2163 3.6651 1.1213 7 6 3.9464 2.8846 0.1709 8 6 3.4696 1.4313 0.2383 9 1 3.6904 1.0211 1.2238 10 6 4.1789 0.6196 -0.8150 11 8 3.6683 0.4599 -1.9033 12 7 5.3806 0.0712 -0.5473 13 6 6.0728 0.3424 0.7223 14 6 6.4585 -0.9929 1.3674 15 8 7.2107 -1.7716 0.4315 16 6 6.5070 -2.0701 -0.7710 17 6 5.4044 -3.1233 -0.5971 18 7 6.4417 -4.1154 -0.9442 19 6 6.6135 -5.4507 -0.6944 20 1 7.4867 -5.9626 -1.0710 21 6 5.6652 -6.1465 0.0429 22 7 4.6008 -5.5228 0.5015 23 14 5.8999 -7.9680 0.3844 24 1 7.1620 -8.1713 1.1400 25 1 4.7559 -8.4729 1.1853 26 1 5.9682 -8.7078 -0.9015 27 6 7.2195 -3.0903 -1.6688 28 6 6.0428 -0.8189 -1.5169 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.4877 1.7999 1.9911 35 1 0.2332 2.1697 0.7827 36 1 1.3130 4.2368 1.6913 37 1 1.5671 4.0590 -0.0618 38 1 5.0103 2.9297 0.4034 39 1 3.7758 3.2774 -0.8314 40 1 5.4098 0.8928 1.3899 41 1 6.9714 0.9288 0.5307 42 1 5.5557 -1.5350 1.6489 43 1 7.0633 -0.8069 2.2549 44 1 5.0370 -3.2106 0.4254 45 1 4.6042 -3.0478 -1.3333 46 1 3.9384 -6.0089 1.0170 47 1 6.9592 -3.0050 -2.7238 48 1 8.2946 -3.1501 -1.4992 49 1 6.9020 -0.3115 -1.9555 50 1 5.3397 -1.0977 -2.3018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053321477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:34 Heat of formation + Delta-G solvation = -28.540025 kcal Electronic energy + Delta-G solvation = -32256.607140 eV Core-core repulsion = 28094.292860 eV Total energy + Delta-G solvation = -4162.314279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.93829 -39.72800 -38.33969 -36.43383 -36.12328 -34.47660 -32.44800 -31.96885 -30.84484 -29.97418 -28.00452 -27.02884 -26.20077 -25.11080 -24.61317 -23.34835 -22.43346 -21.83755 -20.71717 -19.24111 -18.81363 -17.53861 -16.93371 -16.76369 -16.63568 -16.11061 -15.58384 -15.42741 -15.10007 -15.03751 -14.91987 -14.61744 -14.31035 -14.13115 -14.04540 -13.71301 -13.35195 -13.30642 -13.05095 -12.75716 -12.42857 -12.35707 -12.03851 -11.99773 -11.70027 -11.57400 -11.36210 -11.16943 -11.07747 -10.89023 -10.83015 -10.80893 -10.67456 -10.28434 -10.13685 -9.93711 -9.61434 -9.49025 -9.26920 -8.83401 -8.52710 -8.26851 -6.89398 -5.76349 -3.08458 2.53908 2.80623 3.40351 3.43934 3.45108 3.45196 3.64257 4.01001 4.34769 4.44277 4.52718 4.67879 4.71237 4.85931 4.86537 4.93947 5.01137 5.09881 5.13307 5.19972 5.20950 5.25835 5.29115 5.35052 5.37401 5.43022 5.51610 5.54595 5.63253 5.70191 5.78530 5.79420 5.93107 6.03637 6.04441 6.08881 6.27271 6.40768 6.47619 6.51616 6.67209 6.75856 6.80382 6.97204 7.15972 7.38620 7.47911 7.78209 7.96786 8.19106 9.03608 9.70515 10.56629 11.40766 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.003462 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.840874 B = 8085.055836 C = 9038.871919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 N -0.514 5.514 4 C 0.013 3.987 5 C 0.061 3.939 6 O -0.379 6.379 7 C 0.077 3.923 8 C 0.031 3.969 9 H 0.072 0.928 10 C 0.524 3.476 11 O -0.516 6.516 12 N -0.609 5.609 13 C 0.069 3.931 14 C 0.047 3.953 15 O -0.340 6.340 16 C 0.049 3.951 17 C 0.152 3.848 18 N -0.603 5.603 19 C -0.219 4.219 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.136 3.864 28 C 0.101 3.899 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.032 0.968 46 H 0.253 0.747 47 H 0.050 0.950 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 19.585 2.576 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 N -0.240 5.240 4 C -0.115 4.115 5 C -0.016 4.016 6 O -0.297 6.297 7 C 0.000 4.000 8 C -0.081 4.081 9 H 0.090 0.910 10 C 0.310 3.690 11 O -0.390 6.390 12 N -0.344 5.344 13 C -0.055 4.055 14 C -0.031 4.031 15 O -0.258 6.258 16 C 0.007 3.993 17 C 0.027 3.973 18 N -0.329 5.329 19 C -0.347 4.347 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.571 5.571 23 Si 0.743 3.257 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.010 3.990 28 C -0.022 4.022 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.050 0.950 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.078 19.402 1.838 19.911 hybrid contribution -0.206 -1.556 0.852 1.786 sum -4.284 17.847 2.690 18.550 Atomic orbital electron populations 1.21886 0.94620 1.02362 1.01982 1.22268 0.96076 0.87772 1.02222 1.62085 1.01031 1.12510 1.48386 1.22943 1.00209 0.94270 0.94102 1.22750 0.81168 0.95426 1.02292 1.88006 1.18415 1.69498 1.53818 1.22539 0.96211 0.87184 0.94097 1.22354 0.90297 0.97801 0.97639 0.91027 1.20068 0.80577 0.79808 0.88511 1.90699 1.65055 1.59388 1.23850 1.48191 1.19311 1.48082 1.18820 1.22557 0.98009 0.99155 0.85759 1.22857 0.97886 0.89932 0.92380 1.87939 1.39005 1.71632 1.27235 1.23709 0.97159 0.91784 0.86633 1.22660 0.90395 0.83576 1.00698 1.45759 1.21710 1.05374 1.60010 1.18960 1.05042 0.82495 1.28185 0.90144 1.24758 0.96727 0.98248 1.00614 1.69803 1.11526 1.35104 1.40621 0.86186 0.76996 0.84630 0.77871 1.21054 1.21603 1.21171 1.22488 0.96892 0.85844 0.93796 1.22263 0.97518 0.90193 0.92180 0.91695 0.91711 0.92706 0.88932 0.94681 0.93788 0.88468 0.88208 0.91965 0.87968 0.91341 0.89230 0.90233 0.92239 0.88044 0.90696 0.95024 0.93704 0.93221 0.92557 0.91180 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.18 37.16 0.34 -1.28 16 2 C 0.04 0.59 5.37 -3.82 -0.02 0.57 16 3 N -0.51 -6.40 4.42 -227.72 -1.01 -7.41 16 4 C 0.01 0.12 4.94 -3.72 -0.02 0.10 16 5 C 0.06 0.52 7.01 37.21 0.26 0.78 16 6 O -0.38 -4.02 10.83 -35.23 -0.38 -4.40 16 7 C 0.08 0.82 6.16 37.21 0.23 1.04 16 8 C 0.03 0.38 1.49 -68.75 -0.10 0.28 16 9 H 0.07 0.85 6.41 -51.93 -0.33 0.51 16 10 C 0.52 7.87 6.05 -10.98 -0.07 7.81 16 11 O -0.52 -9.48 14.76 5.56 0.08 -9.39 16 12 N -0.61 -8.76 3.03 -172.43 -0.52 -9.28 16 13 C 0.07 0.79 6.14 -3.58 -0.02 0.77 16 14 C 0.05 0.69 6.88 37.28 0.26 0.94 16 15 O -0.34 -6.42 10.52 -35.23 -0.37 -6.79 16 16 C 0.05 0.94 1.21 -90.31 -0.11 0.83 16 17 C 0.15 3.65 6.65 -3.17 -0.02 3.63 16 18 N -0.60 -15.74 3.70 -180.30 -0.67 -16.41 16 19 C -0.22 -6.25 10.70 -15.06 -0.16 -6.42 16 20 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 22 N -0.92 -27.61 11.39 55.49 0.63 -26.97 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.14 2.82 8.33 -3.18 -0.03 2.80 16 28 C 0.10 1.63 5.76 -3.64 -0.02 1.61 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.49 6.28 -51.93 -0.33 0.17 16 32 H 0.09 1.52 6.48 -51.93 -0.34 1.19 16 33 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.79 6.05 -51.93 -0.31 0.48 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.89 7.57 -51.93 -0.39 0.50 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.84 5.23 -51.93 -0.27 0.57 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.98 7.19 -51.93 -0.37 0.61 16 43 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 2.00 6.31 -51.93 -0.33 1.67 16 45 H 0.03 0.80 7.94 -51.93 -0.41 0.39 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 49 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.10 1.77 6.96 -51.93 -0.36 1.41 16 LS Contribution 381.03 15.07 5.74 5.74 Total: -1.00 -34.39 381.03 -9.15 -43.55 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.06 Total: 0.83 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 0.42 Total: 13.16 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -1.56 Total: -60.07 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.67 Total: -20.58 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.39 -9.15 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053321477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.005 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds