Wall clock time and date at job start Sat Apr 11 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46717 * 2 1 4 4 C 1.47014 * 111.00085 * 46.36914 * 3 2 1 5 5 C 1.53096 * 109.25577 * 182.38996 * 4 3 2 6 6 O 1.43018 * 109.26016 * 303.14814 * 5 4 3 7 7 C 1.43016 * 113.73600 * 58.67305 * 6 5 4 8 8 H 1.08997 * 109.50587 * 61.26587 * 7 6 5 9 9 C 1.50696 * 109.50555 * 181.39494 * 7 6 5 10 10 O 1.21284 * 119.99883 * 4.78273 * 9 7 6 11 11 N 1.34777 * 119.99873 * 184.78384 * 9 7 6 12 12 C 1.46501 * 119.99885 * 179.97438 * 11 9 7 13 13 H 1.09005 * 110.73434 * 36.96361 * 12 11 9 14 14 C 1.54468 * 110.82877 * 273.54560 * 12 11 9 15 15 O 1.43517 * 107.57828 * 220.41204 * 14 12 11 16 16 C 1.42541 * 109.63687 * 359.36440 * 15 14 12 17 17 C 1.52954 * 116.16046 * 253.32561 * 16 15 14 18 18 N 1.47776 * 85.80565 * 218.94926 * 17 16 15 19 19 C 1.36928 * 134.40872 * 203.90276 * 18 17 16 20 20 H 1.08004 * 119.99973 * 180.02562 * 19 18 17 21 21 C 1.38814 * 119.99823 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00478 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99846 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47006 * 59.99746 * 23 21 19 25 25 H 1.48493 * 109.47192 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46855 * 300.00226 * 23 21 19 27 27 C 1.47780 * 91.18145 * 23.92118 * 18 17 16 28 28 C 1.54004 * 106.49067 * 23.03867 * 16 15 14 29 29 C 1.47016 * 110.99529 * 170.00262 * 3 2 1 30 30 H 1.08992 * 109.47291 * 60.00039 * 1 2 3 31 31 H 1.09001 * 109.46593 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46881 * 299.99305 * 1 2 3 33 33 H 1.09008 * 109.46751 * 240.00404 * 2 1 3 34 34 H 1.08997 * 109.47199 * 120.00408 * 2 1 3 35 35 H 1.09004 * 109.50527 * 302.32353 * 4 3 2 36 36 H 1.09002 * 109.50515 * 62.45521 * 4 3 2 37 37 H 1.08995 * 109.50552 * 63.08831 * 5 4 3 38 38 H 1.09000 * 109.50300 * 183.17499 * 5 4 3 39 39 H 0.97001 * 120.00254 * 359.97438 * 11 9 7 40 40 H 1.09001 * 109.83060 * 339.92825 * 14 12 11 41 41 H 1.09006 * 109.83282 * 100.89808 * 14 12 11 42 42 H 1.08997 * 113.81734 * 333.17072 * 17 16 15 43 43 H 1.09002 * 113.81616 * 104.72399 * 17 16 15 44 44 H 0.96996 * 120.00612 * 179.97438 * 22 21 19 45 45 H 1.09002 * 113.81545 * 221.85836 * 27 18 17 46 46 H 1.08998 * 113.92939 * 90.31175 * 27 18 17 47 47 H 1.08996 * 111.15841 * 206.95843 * 28 16 15 48 48 H 1.08994 * 111.15596 * 82.71910 * 28 16 15 49 49 H 1.08999 * 109.50576 * 297.53813 * 29 3 2 50 50 H 1.09000 * 109.51010 * 57.67872 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3023 2.1974 0.9934 5 6 1.8008 3.6430 0.9184 6 8 3.2163 3.6650 1.1213 7 6 3.9463 2.8845 0.1709 8 1 3.7751 3.2777 -0.8312 9 6 5.4173 2.9470 0.4923 10 8 5.7961 3.5231 1.4901 11 7 6.3119 2.3627 -0.3291 12 6 7.7420 2.4239 -0.0170 13 1 7.9061 2.3462 1.0578 14 6 8.3714 3.7188 -0.5764 15 8 9.6583 3.3786 -1.1128 16 6 9.9017 1.9864 -0.9276 17 6 10.9207 1.6178 0.1520 18 7 11.3709 0.5673 -0.7848 19 6 12.0200 -0.6298 -0.6420 20 1 12.2409 -1.2315 -1.5113 21 6 12.3941 -1.0701 0.6202 22 7 12.1245 -0.3372 1.6797 23 14 13.2804 -2.7030 0.8151 24 1 14.5554 -2.6680 0.0547 25 1 13.5680 -2.9417 2.2522 26 1 12.4226 -3.7971 0.2930 27 6 10.8410 1.3253 -1.9375 28 6 8.5224 1.3172 -0.7810 29 6 3.4696 1.4312 0.2383 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 0.2332 2.1697 0.7827 36 1 1.4878 1.7997 1.9912 37 1 1.5671 4.0581 -0.0619 38 1 1.3125 4.2369 1.6910 39 1 6.0090 1.9016 -1.1270 40 1 7.7384 4.1272 -1.3643 41 1 8.4857 4.4501 0.2238 42 1 11.6657 2.3917 0.3366 43 1 10.4721 1.2295 1.0664 44 1 12.3856 -0.6450 2.5617 45 1 10.3295 0.7057 -2.6741 46 1 11.5606 2.0114 -2.3840 47 1 8.5892 0.4037 -0.1902 48 1 8.0747 1.1214 -1.7553 49 1 3.6896 1.0213 1.2240 50 1 3.9826 0.8443 -0.5236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054014278.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:03 Heat of formation + Delta-G solvation = -45.999741 kcal Electronic energy + Delta-G solvation = -30456.152844 eV Core-core repulsion = 26293.081455 eV Total energy + Delta-G solvation = -4163.071390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.75131 -39.93265 -38.77401 -36.62018 -36.19138 -34.57021 -32.35959 -32.09349 -31.16088 -30.13946 -28.20320 -27.24276 -25.79926 -24.93423 -24.77729 -23.30125 -22.04791 -21.52010 -20.76601 -20.52289 -18.74996 -17.79857 -17.07579 -16.75771 -16.51023 -16.24002 -15.84891 -15.68266 -15.36138 -15.09213 -14.96709 -14.62509 -14.54414 -14.24249 -13.91765 -13.73933 -13.63290 -13.15083 -12.87519 -12.68335 -12.59448 -12.34396 -12.16004 -11.95991 -11.78140 -11.66063 -11.40819 -11.37962 -11.14671 -11.09885 -10.92055 -10.84766 -10.72512 -10.32879 -10.08151 -10.02745 -9.81292 -9.57055 -9.13966 -8.88494 -8.82144 -8.74590 -6.92901 -5.79028 -3.12482 2.40790 2.58555 3.27429 3.37990 3.42175 3.44042 3.70787 4.20609 4.32345 4.40812 4.47883 4.48569 4.56229 4.64487 4.69107 4.75759 4.85339 4.96609 5.00607 5.08624 5.12182 5.19938 5.22717 5.25266 5.31276 5.33854 5.40094 5.42590 5.46497 5.53457 5.55595 5.68136 5.90715 5.98475 6.10541 6.28201 6.34755 6.41052 6.42659 6.45430 6.57750 6.66824 6.71372 7.02732 7.20761 7.34176 7.49412 7.69924 7.94056 8.07734 9.01272 9.67353 10.55176 11.37888 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002470 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.099236 B =11333.411405 C =12435.470780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.008 3.992 5 C 0.062 3.938 6 O -0.355 6.355 7 C 0.080 3.920 8 H 0.094 0.906 9 C 0.520 3.480 10 O -0.511 6.511 11 N -0.714 5.714 12 C 0.114 3.886 13 H 0.107 0.893 14 C 0.046 3.954 15 O -0.368 6.368 16 C 0.056 3.944 17 C 0.157 3.843 18 N -0.605 5.605 19 C -0.223 4.223 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.130 3.870 28 C -0.120 4.120 29 C 0.028 3.972 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.402 0.598 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.255 0.745 45 H 0.049 0.951 46 H 0.044 0.956 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.052 0.948 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.332 4.377 -5.529 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.079 4.079 3 N -0.261 5.261 4 C -0.120 4.120 5 C -0.015 4.015 6 O -0.273 6.273 7 C 0.018 3.982 8 H 0.111 0.889 9 C 0.303 3.697 10 O -0.384 6.384 11 N -0.368 5.368 12 C 0.009 3.991 13 H 0.125 0.875 14 C -0.033 4.033 15 O -0.286 6.286 16 C 0.015 3.985 17 C 0.031 3.969 18 N -0.333 5.333 19 C -0.351 4.351 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.003 3.997 28 C -0.158 4.158 29 C -0.101 4.101 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.236 0.764 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.118 0.882 48 H 0.096 0.904 49 H 0.071 0.929 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.766 5.001 -4.992 25.754 hybrid contribution 0.319 -1.683 0.449 1.771 sum -24.447 3.317 -4.542 25.086 Atomic orbital electron populations 1.21931 0.94679 1.02258 1.02509 1.22146 0.95994 0.88298 1.01442 1.62329 1.03141 1.11721 1.48886 1.22960 0.99967 0.94663 0.94385 1.22768 0.80934 0.95301 1.02467 1.88142 1.17660 1.69001 1.52475 1.21912 0.89884 0.91881 0.94494 0.88860 1.20064 0.86980 0.79091 0.83520 1.90763 1.80321 1.41257 1.26084 1.45852 1.06385 1.57137 1.27456 1.22673 0.78704 0.95711 1.02008 0.87483 1.23455 0.85393 0.96513 0.97907 1.88312 1.34058 1.25526 1.80703 1.24182 0.94433 0.79162 1.00696 1.22558 0.91443 0.88965 0.93911 1.45726 1.68480 1.17579 1.01553 1.18914 1.30349 0.92779 0.93026 0.90123 1.24804 1.01283 0.98865 0.95374 1.69807 1.51200 1.37812 0.97749 0.86189 0.79587 0.83082 0.76817 1.21129 1.21541 1.21065 1.22551 0.93061 0.92317 0.91725 1.22962 0.93826 0.98521 1.00533 1.22685 0.89273 0.95982 1.02139 0.91623 0.91862 0.92343 0.90093 0.94436 0.88713 0.93610 0.91975 0.87808 0.76356 0.91720 0.91037 0.94653 0.90585 0.93463 0.93299 0.93865 0.88205 0.90421 0.92927 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 9.18 37.16 0.34 -0.45 16 2 C 0.05 0.32 6.00 -3.82 -0.02 0.29 16 3 N -0.54 -4.14 4.88 -234.30 -1.14 -5.28 16 4 C 0.01 0.06 4.94 -3.71 -0.02 0.04 16 5 C 0.06 0.49 7.01 37.21 0.26 0.75 16 6 O -0.36 -4.28 10.01 -55.07 -0.55 -4.83 16 7 C 0.08 0.83 3.22 -27.83 -0.09 0.74 16 8 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 9 C 0.52 6.85 7.18 -10.99 -0.08 6.77 16 10 O -0.51 -9.16 16.24 -14.28 -0.23 -9.40 16 11 N -0.71 -8.14 5.10 -51.78 -0.26 -8.40 16 12 C 0.11 1.67 3.29 -65.84 -0.22 1.45 16 13 H 0.11 1.82 7.71 -51.93 -0.40 1.42 16 14 C 0.05 0.70 7.57 37.93 0.29 0.99 16 15 O -0.37 -6.83 11.17 -35.23 -0.39 -7.23 16 16 C 0.06 1.08 1.47 -90.30 -0.13 0.95 16 17 C 0.16 3.78 6.99 -3.37 -0.02 3.76 16 18 N -0.60 -15.44 3.69 -183.16 -0.68 -16.12 16 19 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 20 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -27.13 11.40 55.49 0.63 -26.50 16 23 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.13 2.70 8.49 -3.37 -0.03 2.67 16 28 C -0.12 -1.90 6.02 -24.89 -0.15 -2.05 16 29 C 0.03 0.24 4.86 -3.71 -0.02 0.23 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.28 6.28 -51.93 -0.33 -0.04 16 33 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 35 H 0.09 0.51 6.05 -51.93 -0.31 0.19 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.40 3.29 8.37 -40.82 -0.34 2.94 16 40 H 0.06 0.88 8.02 -51.93 -0.42 0.46 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.98 7.16 -51.93 -0.37 1.61 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 46 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.10 1.78 8.05 -51.93 -0.42 1.36 16 48 H 0.08 1.02 7.98 -51.93 -0.41 0.61 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.09 0.66 8.01 -51.93 -0.42 0.25 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -34.26 395.28 -10.30 -44.56 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.46 Total: 0.82 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -0.15 Total: 9.52 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -1.45 Total: -56.31 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.18 Total: -21.45 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.26 -10.30 -44.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054014278.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.443 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds