Wall clock time and date at job start Sat Apr 11 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46717 * 2 1 4 4 C 1.47014 * 111.00085 * 46.36914 * 3 2 1 5 5 C 1.53096 * 109.25577 * 182.38996 * 4 3 2 6 6 O 1.43018 * 109.26016 * 303.14814 * 5 4 3 7 7 C 1.43016 * 113.73600 * 58.67305 * 6 5 4 8 8 H 1.08997 * 109.50587 * 61.26587 * 7 6 5 9 9 C 1.50696 * 109.50555 * 181.39494 * 7 6 5 10 10 O 1.21284 * 119.99883 * 4.78273 * 9 7 6 11 11 N 1.34777 * 119.99873 * 184.78384 * 9 7 6 12 12 C 1.46501 * 119.99885 * 179.97438 * 11 9 7 13 13 H 1.09005 * 110.73434 * 36.96361 * 12 11 9 14 14 C 1.54468 * 110.82877 * 273.54560 * 12 11 9 15 15 O 1.43517 * 107.57828 * 220.41204 * 14 12 11 16 16 C 1.42541 * 109.63687 * 359.36440 * 15 14 12 17 17 C 1.52954 * 116.16046 * 253.32561 * 16 15 14 18 18 N 1.47776 * 85.80565 * 218.94926 * 17 16 15 19 19 C 1.36928 * 134.40872 * 203.90276 * 18 17 16 20 20 H 1.08004 * 119.99973 * 180.02562 * 19 18 17 21 21 C 1.38814 * 119.99823 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00478 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99846 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47006 * 59.99746 * 23 21 19 25 25 H 1.48493 * 109.47192 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46855 * 300.00226 * 23 21 19 27 27 C 1.47780 * 91.18145 * 23.92118 * 18 17 16 28 28 C 1.54004 * 106.49067 * 23.03867 * 16 15 14 29 29 C 1.47016 * 110.99529 * 170.00262 * 3 2 1 30 30 H 1.08992 * 109.47291 * 60.00039 * 1 2 3 31 31 H 1.09001 * 109.46593 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46881 * 299.99305 * 1 2 3 33 33 H 1.09008 * 109.46751 * 240.00404 * 2 1 3 34 34 H 1.08997 * 109.47199 * 120.00408 * 2 1 3 35 35 H 1.09004 * 109.50527 * 302.32353 * 4 3 2 36 36 H 1.09002 * 109.50515 * 62.45521 * 4 3 2 37 37 H 1.08995 * 109.50552 * 63.08831 * 5 4 3 38 38 H 1.09000 * 109.50300 * 183.17499 * 5 4 3 39 39 H 0.97001 * 120.00254 * 359.97438 * 11 9 7 40 40 H 1.09001 * 109.83060 * 339.92825 * 14 12 11 41 41 H 1.09006 * 109.83282 * 100.89808 * 14 12 11 42 42 H 1.08997 * 113.81734 * 333.17072 * 17 16 15 43 43 H 1.09002 * 113.81616 * 104.72399 * 17 16 15 44 44 H 0.96996 * 120.00612 * 179.97438 * 22 21 19 45 45 H 1.09002 * 113.81545 * 221.85836 * 27 18 17 46 46 H 1.08998 * 113.92939 * 90.31175 * 27 18 17 47 47 H 1.08996 * 111.15841 * 206.95843 * 28 16 15 48 48 H 1.08994 * 111.15596 * 82.71910 * 28 16 15 49 49 H 1.08999 * 109.50576 * 297.53813 * 29 3 2 50 50 H 1.09000 * 109.51010 * 57.67872 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3023 2.1974 0.9934 5 6 1.8008 3.6430 0.9184 6 8 3.2163 3.6650 1.1213 7 6 3.9463 2.8845 0.1709 8 1 3.7751 3.2777 -0.8312 9 6 5.4173 2.9470 0.4923 10 8 5.7961 3.5231 1.4901 11 7 6.3119 2.3627 -0.3291 12 6 7.7420 2.4239 -0.0170 13 1 7.9061 2.3462 1.0578 14 6 8.3714 3.7188 -0.5764 15 8 9.6583 3.3786 -1.1128 16 6 9.9017 1.9864 -0.9276 17 6 10.9207 1.6178 0.1520 18 7 11.3709 0.5673 -0.7848 19 6 12.0200 -0.6298 -0.6420 20 1 12.2409 -1.2315 -1.5113 21 6 12.3941 -1.0701 0.6202 22 7 12.1245 -0.3372 1.6797 23 14 13.2804 -2.7030 0.8151 24 1 14.5554 -2.6680 0.0547 25 1 13.5680 -2.9417 2.2522 26 1 12.4226 -3.7971 0.2930 27 6 10.8410 1.3253 -1.9375 28 6 8.5224 1.3172 -0.7810 29 6 3.4696 1.4312 0.2383 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 0.2332 2.1697 0.7827 36 1 1.4878 1.7997 1.9912 37 1 1.5671 4.0581 -0.0619 38 1 1.3125 4.2369 1.6910 39 1 6.0090 1.9016 -1.1270 40 1 7.7384 4.1272 -1.3643 41 1 8.4857 4.4501 0.2238 42 1 11.6657 2.3917 0.3366 43 1 10.4721 1.2295 1.0664 44 1 12.3856 -0.6450 2.5617 45 1 10.3295 0.7057 -2.6741 46 1 11.5606 2.0114 -2.3840 47 1 8.5892 0.4037 -0.1902 48 1 8.0747 1.1214 -1.7553 49 1 3.6896 1.0213 1.2240 50 1 3.9826 0.8443 -0.5236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054014278.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:02 Heat of formation + Delta-G solvation = -72.463503 kcal Electronic energy + Delta-G solvation = -30457.300399 eV Core-core repulsion = 26293.081455 eV Total energy + Delta-G solvation = -4164.218944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83347 -41.14846 -39.82714 -37.92193 -37.21214 -35.81258 -34.14201 -33.18677 -31.70686 -31.31061 -29.88745 -28.04983 -27.46693 -26.72500 -25.45058 -24.06734 -23.84311 -22.57954 -21.69726 -21.32478 -20.36182 -18.81527 -18.66980 -18.03994 -17.42675 -17.22966 -16.95111 -16.70192 -16.47367 -16.37924 -16.25551 -15.85123 -15.58221 -15.37076 -15.19245 -14.91860 -14.49865 -14.42349 -14.25366 -13.96478 -13.70856 -13.39359 -13.17215 -12.89662 -12.83753 -12.81538 -12.74675 -12.67452 -12.60600 -12.37217 -12.36084 -12.03682 -11.84056 -11.78506 -11.77101 -11.49709 -10.94463 -10.84899 -10.76229 -10.36512 -10.25994 -9.49996 -8.98525 -7.91622 -5.27165 1.38141 1.45936 1.49787 1.55991 1.62813 2.43579 2.64745 2.79665 2.98295 3.18858 3.33691 3.50508 3.57749 3.66644 3.70861 3.76673 3.89004 3.96804 4.02185 4.03705 4.08111 4.22228 4.30039 4.44559 4.48578 4.58760 4.63481 4.63864 4.68136 4.74376 4.75415 4.81013 4.85539 4.88759 4.93147 4.99960 5.02550 5.10385 5.13852 5.20432 5.29293 5.33101 5.48211 5.81159 5.85707 5.90128 5.98595 6.15546 6.42829 6.87528 7.09320 7.57862 8.51340 9.25154 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002470 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.099236 B =11333.411405 C =12435.470780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.009 3.991 5 C 0.058 3.942 6 O -0.391 6.391 7 C 0.087 3.913 8 H 0.122 0.878 9 C 0.519 3.481 10 O -0.566 6.566 11 N -0.694 5.694 12 C 0.125 3.875 13 H 0.076 0.924 14 C 0.045 3.955 15 O -0.378 6.378 16 C 0.077 3.923 17 C 0.149 3.851 18 N -0.629 5.629 19 C -0.232 4.232 20 H 0.092 0.908 21 C -0.068 4.068 22 N -0.955 5.955 23 Si 0.982 3.018 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.270 1.270 27 C 0.131 3.869 28 C -0.107 4.107 29 C 0.032 3.968 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.027 0.973 35 H 0.117 0.883 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.423 0.577 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.007 0.993 43 H 0.046 0.954 44 H 0.248 0.752 45 H 0.080 0.920 46 H 0.045 0.955 47 H 0.078 0.922 48 H 0.120 0.880 49 H 0.028 0.972 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.669 3.548 -8.396 29.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.082 4.082 3 N -0.258 5.258 4 C -0.119 4.119 5 C -0.018 4.018 6 O -0.310 6.310 7 C 0.026 3.974 8 H 0.139 0.861 9 C 0.305 3.695 10 O -0.443 6.443 11 N -0.349 5.349 12 C 0.019 3.981 13 H 0.094 0.906 14 C -0.033 4.033 15 O -0.296 6.296 16 C 0.036 3.964 17 C 0.023 3.977 18 N -0.358 5.358 19 C -0.360 4.360 20 H 0.110 0.890 21 C -0.261 4.261 22 N -0.604 5.604 23 Si 0.810 3.190 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.195 1.195 27 C 0.007 3.993 28 C -0.145 4.145 29 C -0.097 4.097 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.046 0.954 35 H 0.135 0.865 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.262 0.738 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.024 0.976 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.062 0.938 47 H 0.097 0.903 48 H 0.138 0.862 49 H 0.047 0.953 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -27.140 4.159 -7.940 28.582 hybrid contribution 1.020 -1.341 1.334 2.149 sum -26.120 2.818 -6.606 27.090 Atomic orbital electron populations 1.21902 0.93443 1.02901 1.02710 1.22232 0.97049 0.87543 1.01339 1.62392 1.02349 1.12430 1.48658 1.23000 1.01136 0.94129 0.93595 1.23002 0.79012 0.96032 1.03775 1.88099 1.19798 1.69548 1.53527 1.21923 0.87389 0.92845 0.95262 0.86074 1.20693 0.88423 0.77821 0.82553 1.90744 1.81329 1.43763 1.28442 1.45587 1.04679 1.56691 1.27937 1.22266 0.80559 0.95082 1.00168 0.90600 1.23599 0.84533 0.96533 0.98653 1.88295 1.35910 1.24820 1.80541 1.23722 0.95138 0.80269 0.97299 1.22453 0.92531 0.88333 0.94393 1.46040 1.68455 1.17528 1.03747 1.19380 1.29535 0.93676 0.93395 0.89023 1.25697 1.02693 1.02512 0.95188 1.70028 1.52805 1.39677 0.97858 0.85105 0.78608 0.79210 0.76120 1.20394 1.22445 1.19545 1.22690 0.93138 0.92165 0.91342 1.22851 0.91887 0.97305 1.02417 1.22659 0.90446 0.95019 1.01590 0.91258 0.91089 0.92209 0.89303 0.95444 0.86524 0.95130 0.90508 0.86620 0.73841 0.88594 0.92019 0.97557 0.93524 0.94302 0.90158 0.93766 0.90286 0.86209 0.95328 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.18 71.98 0.66 -0.52 16 2 C 0.05 0.50 6.00 86.30 0.52 1.02 16 3 N -0.53 -7.04 4.88 -895.18 -4.36 -11.41 16 4 C 0.01 0.12 4.94 86.31 0.43 0.54 16 5 C 0.06 0.82 7.01 72.01 0.50 1.32 16 6 O -0.39 -9.10 10.01 -130.01 -1.30 -10.40 16 7 C 0.09 1.64 3.22 29.88 0.10 1.74 16 8 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 9 C 0.52 13.26 7.18 87.66 0.63 13.89 16 10 O -0.57 -20.80 16.24 15.92 0.26 -20.54 16 11 N -0.69 -14.43 5.10 -436.13 -2.23 -16.66 16 12 C 0.13 3.59 3.29 46.34 0.15 3.74 16 13 H 0.08 2.70 7.71 -2.38 -0.02 2.68 16 14 C 0.04 1.32 7.57 72.48 0.55 1.87 16 15 O -0.38 -13.64 11.17 -148.98 -1.66 -15.30 16 16 C 0.08 2.93 1.47 -10.43 -0.02 2.91 16 17 C 0.15 7.50 6.99 86.12 0.60 8.10 16 18 N -0.63 -32.41 3.69 -739.49 -2.73 -35.14 16 19 C -0.23 -12.86 10.70 84.04 0.90 -11.96 16 20 H 0.09 4.75 7.83 -2.91 -0.02 4.72 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.96 -58.58 11.40 21.65 0.25 -58.34 16 23 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 C 0.13 5.28 8.49 86.11 0.73 6.01 16 28 C -0.11 -3.20 6.02 31.79 0.19 -3.01 16 29 C 0.03 0.50 4.86 86.32 0.42 0.92 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.45 6.28 -2.39 -0.01 0.43 16 33 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.03 0.36 8.08 -2.39 -0.02 0.34 16 35 H 0.12 0.95 6.05 -2.39 -0.01 0.94 16 36 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.42 5.31 8.37 -92.71 -0.78 4.53 16 40 H 0.10 2.29 8.02 -2.39 -0.02 2.28 16 41 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.05 2.59 7.16 -2.39 -0.02 2.57 16 44 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 45 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 46 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.08 2.78 8.05 -2.39 -0.02 2.76 16 48 H 0.12 2.62 7.98 -2.39 -0.02 2.60 16 49 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.11 1.28 8.01 -2.39 -0.02 1.26 16 Total: -1.00 -78.01 395.28 -2.76 -80.78 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.16 Total: 16.30 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 6.83 Total: 23.17 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -9.07 Total: -121.54 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -2.71 Total: -46.24 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -78.01 -2.76 -80.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054014278.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.312 kcal (2) G-P(sol) polarization free energy of solvation -78.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds