Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47296 * 2 1 4 4 C 1.47016 * 111.00272 * 66.04891 * 3 2 1 5 5 C 1.53096 * 109.25942 * 177.60825 * 4 3 2 6 6 O 1.43012 * 109.25705 * 56.84534 * 5 4 3 7 7 C 1.43012 * 113.74365 * 301.32719 * 6 5 4 8 8 H 1.09004 * 109.50313 * 298.69994 * 7 6 5 9 9 C 1.50701 * 109.51153 * 178.60842 * 7 6 5 10 10 O 1.21281 * 119.99687 * 354.99817 * 9 7 6 11 11 N 1.34773 * 119.99638 * 175.00168 * 9 7 6 12 12 C 1.46505 * 119.99362 * 180.02562 * 11 9 7 13 13 H 1.09000 * 110.73440 * 34.29322 * 12 11 9 14 14 C 1.54471 * 110.82152 * 270.88020 * 12 11 9 15 15 O 1.43521 * 107.57549 * 220.41361 * 14 12 11 16 16 C 1.42551 * 109.63986 * 359.36469 * 15 14 12 17 17 C 1.52952 * 116.16023 * 253.33941 * 16 15 14 18 18 N 1.47771 * 85.80046 * 218.93763 * 17 16 15 19 19 C 1.36939 * 134.41084 * 203.89555 * 18 17 16 20 20 H 1.08002 * 120.00417 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99947 * 0.03410 * 19 18 17 22 22 N 1.31622 * 119.99655 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00032 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47370 * 59.99974 * 23 21 19 25 25 H 1.48503 * 109.47034 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47017 * 299.99557 * 23 21 19 27 27 C 1.47777 * 91.18474 * 23.92233 * 18 17 16 28 28 C 1.54267 * 106.60167 * 22.89439 * 16 15 14 29 29 C 1.47010 * 111.00052 * 302.40656 * 3 2 1 30 30 H 1.09001 * 109.46806 * 59.99929 * 1 2 3 31 31 H 1.08997 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46994 * 300.00185 * 1 2 3 33 33 H 1.09003 * 109.47447 * 239.99539 * 2 1 3 34 34 H 1.09009 * 109.47134 * 120.00119 * 2 1 3 35 35 H 1.08999 * 109.50851 * 57.66502 * 4 3 2 36 36 H 1.09004 * 109.50278 * 297.54265 * 4 3 2 37 37 H 1.09001 * 109.50487 * 176.77808 * 5 4 3 38 38 H 1.08997 * 109.50276 * 296.91013 * 5 4 3 39 39 H 0.96990 * 120.00677 * 359.97438 * 11 9 7 40 40 H 1.08995 * 109.83311 * 339.92185 * 14 12 11 41 41 H 1.09001 * 109.82997 * 100.91223 * 14 12 11 42 42 H 1.08992 * 113.81973 * 333.16075 * 17 16 15 43 43 H 1.09002 * 113.82112 * 104.71965 * 17 16 15 44 44 H 0.97001 * 120.00030 * 180.02562 * 22 21 19 45 45 H 1.08997 * 113.81779 * 221.85876 * 27 18 17 46 46 H 1.08993 * 113.93091 * 90.31017 * 27 18 17 47 47 H 1.09002 * 111.33141 * 207.20309 * 28 16 15 48 48 H 1.09004 * 111.09114 * 82.88599 * 28 16 15 49 49 H 1.09008 * 109.50529 * 62.46151 * 29 3 2 50 50 H 1.08992 * 109.54732 * 302.35060 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6700 2.0674 1.2543 5 6 2.2494 3.4844 1.2366 6 8 1.7596 4.1799 0.0870 7 6 2.0828 3.5433 -1.1521 8 1 3.1660 3.4936 -1.2641 9 6 1.4948 4.3338 -2.2925 10 8 0.7857 5.2910 -2.0647 11 7 1.7568 3.9769 -3.5655 12 6 1.1855 4.7457 -4.6740 13 1 1.1180 5.8026 -4.4163 14 6 -0.1988 4.1882 -5.0730 15 8 -0.2789 4.2117 -6.5057 16 6 0.9268 4.7485 -7.0443 17 6 0.8388 6.1650 -7.6145 18 7 1.7415 5.6763 -8.6776 19 6 2.6290 6.2752 -9.5313 20 1 3.1847 5.6778 -10.2389 21 6 2.8147 7.6502 -9.4871 22 7 2.1372 8.3783 -8.6249 23 14 4.0259 8.4670 -10.6511 24 1 3.6172 8.2052 -12.0545 25 1 4.0394 9.9312 -10.4039 26 1 5.3845 7.9140 -10.4198 27 6 1.3033 4.2832 -8.4518 28 6 2.0173 4.5452 -5.9722 29 6 1.5018 2.1268 -1.1587 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.0850 1.5149 2.0973 36 1 0.5854 2.1188 1.3506 37 1 1.9444 4.0136 2.1395 38 1 3.3373 3.4323 1.1944 39 1 2.3241 3.2116 -3.7477 40 1 -0.3027 3.1645 -4.7135 41 1 -0.9851 4.8124 -4.6484 42 1 -0.1552 6.4351 -7.9708 43 1 1.2845 6.9259 -6.9739 44 1 2.2666 9.3391 -8.5942 45 1 2.1160 3.5573 -8.4727 46 1 0.4494 3.9843 -9.0597 47 1 2.8017 5.2974 -6.0569 48 1 2.4331 3.5388 -6.0215 49 1 0.4145 2.1792 -1.1011 50 1 1.7935 1.6181 -2.0774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054014279.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -46.735252 kcal Electronic energy + Delta-G solvation = -30619.150791 eV Core-core repulsion = 26456.047507 eV Total energy + Delta-G solvation = -4163.103284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79101 -39.95098 -38.79788 -36.70467 -36.20393 -34.56573 -32.18157 -32.08101 -31.17636 -30.02389 -28.15397 -27.12634 -25.81197 -25.13596 -24.91976 -23.46014 -22.06448 -21.63936 -20.71529 -20.34523 -18.75125 -17.85250 -17.11631 -16.74199 -16.54595 -16.06476 -15.81880 -15.52945 -15.32462 -15.19549 -14.98777 -14.67628 -14.40496 -14.39110 -13.97933 -13.73615 -13.60198 -13.04852 -12.91078 -12.86781 -12.61878 -12.34375 -12.30680 -11.99267 -11.83207 -11.65941 -11.43846 -11.35464 -11.11699 -11.03831 -10.91378 -10.84189 -10.71653 -10.33507 -10.10308 -10.02243 -9.81404 -9.56517 -9.13609 -8.87582 -8.81447 -8.75169 -6.92199 -5.78225 -3.11720 2.41093 2.58854 3.28796 3.39109 3.43085 3.45074 3.70593 4.20785 4.30032 4.39503 4.44102 4.49242 4.57863 4.61325 4.71713 4.73224 4.83097 4.90539 4.96484 5.07018 5.10925 5.20696 5.22935 5.24885 5.28610 5.32541 5.39128 5.42201 5.44892 5.46606 5.54027 5.73864 5.89251 5.95789 6.10831 6.29893 6.34764 6.38242 6.42358 6.43689 6.57516 6.66797 6.71398 7.02412 7.21366 7.34331 7.50089 7.69323 7.94880 8.07941 9.02083 9.68148 10.55747 11.38711 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020053 B = 0.002334 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.996729 B =11991.381933 C =12559.417844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.050 3.950 3 N -0.533 5.533 4 C 0.011 3.989 5 C 0.062 3.938 6 O -0.355 6.355 7 C 0.079 3.921 8 H 0.094 0.906 9 C 0.520 3.480 10 O -0.511 6.511 11 N -0.714 5.714 12 C 0.113 3.887 13 H 0.109 0.891 14 C 0.046 3.954 15 O -0.368 6.368 16 C 0.055 3.945 17 C 0.157 3.843 18 N -0.604 5.604 19 C -0.224 4.224 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.130 3.870 28 C -0.120 4.120 29 C 0.025 3.975 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.401 0.599 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.255 0.745 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.056 0.944 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.102 -17.880 20.715 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.078 4.078 3 N -0.257 5.257 4 C -0.117 4.117 5 C -0.015 4.015 6 O -0.272 6.272 7 C 0.017 3.983 8 H 0.111 0.889 9 C 0.304 3.696 10 O -0.384 6.384 11 N -0.368 5.368 12 C 0.008 3.992 13 H 0.127 0.873 14 C -0.032 4.032 15 O -0.286 6.286 16 C 0.015 3.985 17 C 0.031 3.969 18 N -0.333 5.333 19 C -0.351 4.351 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.744 3.256 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.004 3.996 28 C -0.158 4.158 29 C -0.103 4.103 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.236 0.764 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.119 0.881 48 H 0.095 0.905 49 H 0.074 0.926 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.022 -16.787 20.624 26.592 hybrid contribution 0.179 -0.096 -0.560 0.596 sum 0.157 -16.883 20.063 26.222 Atomic orbital electron populations 1.22458 0.97860 1.02740 1.02417 1.22196 0.93218 0.89032 1.03311 1.62457 1.58764 1.02467 1.02050 1.22879 0.99913 0.96013 0.92888 1.22761 0.98771 0.91145 0.88822 1.88142 1.78104 1.48467 1.12514 1.21932 1.00149 0.90845 0.85398 0.88851 1.20067 0.81233 0.84928 0.83404 1.90762 1.36219 1.27338 1.84126 1.45840 1.52565 1.33525 1.04876 1.22681 0.93121 0.97540 0.85846 0.87329 1.23442 0.96779 1.00289 0.82703 1.88313 1.38496 1.84222 1.17556 1.24244 0.82612 0.98242 0.93403 1.22560 0.93427 0.91848 0.89065 1.45720 1.44550 1.01275 1.41755 1.18915 1.13792 0.90319 1.12085 0.90119 1.24808 1.00036 0.95961 0.99520 1.69812 1.43601 1.05447 1.37688 0.86183 0.80633 0.78479 0.80342 1.21138 1.21533 1.21057 1.22542 0.96584 0.89660 0.90848 1.23012 0.98376 1.03182 0.91251 1.22713 0.99138 0.93161 0.95313 0.92112 0.91702 0.92410 0.90127 0.90292 0.89322 0.93253 0.87797 0.91935 0.76369 0.91847 0.91116 0.94686 0.90557 0.93451 0.93303 0.93900 0.88134 0.90472 0.92560 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.14 9.20 37.16 0.34 -0.80 16 2 C 0.05 0.28 6.10 -3.83 -0.02 0.26 16 3 N -0.53 -3.82 4.94 -234.31 -1.16 -4.98 16 4 C 0.01 0.08 5.33 -3.71 -0.02 0.06 16 5 C 0.06 0.49 7.01 37.21 0.26 0.75 16 6 O -0.35 -4.27 10.01 -55.06 -0.55 -4.82 16 7 C 0.08 0.81 3.22 -27.83 -0.09 0.72 16 8 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 9 C 0.52 6.85 7.18 -10.99 -0.08 6.77 16 10 O -0.51 -9.17 16.20 -14.27 -0.23 -9.40 16 11 N -0.71 -8.12 5.09 -51.78 -0.26 -8.38 16 12 C 0.11 1.65 3.33 -65.84 -0.22 1.43 16 13 H 0.11 1.86 7.63 -51.93 -0.40 1.46 16 14 C 0.05 0.70 7.58 37.93 0.29 0.99 16 15 O -0.37 -6.77 11.17 -35.23 -0.39 -7.16 16 16 C 0.06 1.07 1.48 -90.17 -0.13 0.94 16 17 C 0.16 3.78 6.98 -3.37 -0.02 3.76 16 18 N -0.60 -15.45 3.69 -183.22 -0.68 -16.13 16 19 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -27.21 11.40 55.49 0.63 -26.58 16 23 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.13 2.70 8.50 -3.38 -0.03 2.67 16 28 C -0.12 -1.91 6.05 -24.75 -0.15 -2.06 16 29 C 0.03 0.21 4.37 -3.71 -0.02 0.19 16 30 H 0.06 0.41 6.42 -51.93 -0.33 0.08 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.36 6.61 -51.93 -0.34 0.02 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.37 8.11 -51.92 -0.42 -0.05 16 35 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.05 0.37 6.59 -51.93 -0.34 0.03 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.40 3.28 8.41 -40.82 -0.34 2.94 16 40 H 0.06 0.83 8.02 -51.93 -0.42 0.41 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.99 7.16 -51.93 -0.37 1.62 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 46 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.10 1.81 8.05 -51.93 -0.42 1.39 16 48 H 0.08 1.02 7.98 -51.93 -0.41 0.61 16 49 H 0.06 0.53 6.41 -51.92 -0.33 0.20 16 50 H 0.09 0.60 8.02 -51.93 -0.42 0.18 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -34.29 392.77 -10.21 -44.50 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.32 Total: 1.01 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.15 Total: 9.02 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -1.46 Total: -56.06 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.18 Total: -21.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.29 -10.21 -44.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054014279.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.231 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds