Wall clock time and date at job start Sat Apr 11 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42893 * 114.00038 * 2 1 4 4 H 1.08995 * 109.47645 * 29.99889 * 3 2 1 5 5 C 1.53009 * 109.47102 * 269.99945 * 3 2 1 6 6 C 1.50697 * 109.47213 * 150.00151 * 3 2 1 7 7 O 1.21284 * 119.99792 * 4.99736 * 6 3 2 8 8 N 1.34771 * 120.00296 * 184.99688 * 6 3 2 9 9 C 1.46923 * 120.62991 * 0.02562 * 8 6 3 10 10 C 1.53192 * 108.77988 * 126.36910 * 9 8 6 11 11 C 1.53040 * 109.33970 * 54.61614 * 10 9 8 12 12 C 1.53045 * 109.53992 * 298.68813 * 11 10 9 13 13 H 1.08999 * 109.49555 * 301.34703 * 12 11 10 14 14 N 1.46497 * 109.49765 * 181.28478 * 12 11 10 15 15 C 1.45650 * 117.70706 * 120.06313 * 14 12 11 16 16 C 1.52986 * 110.77280 * 158.09741 * 15 14 12 17 17 N 1.47267 * 108.18671 * 46.72992 * 16 15 14 18 18 C 1.36933 * 121.35552 * 118.47514 * 17 16 15 19 19 H 1.07999 * 119.99798 * 335.22442 * 18 17 16 20 20 C 1.38815 * 120.00355 * 155.50168 * 18 17 16 21 21 N 1.31615 * 120.00148 * 159.96773 * 20 18 17 22 22 Si 1.86801 * 119.99787 * 339.96816 * 20 18 17 23 23 H 1.48497 * 109.47078 * 88.16681 * 22 20 18 24 24 H 1.48494 * 109.47011 * 208.16970 * 22 20 18 25 25 H 1.48503 * 109.47348 * 328.17196 * 22 20 18 26 26 C 1.47049 * 117.29160 * 298.73922 * 17 16 15 27 27 C 1.33381 * 117.70252 * 300.04114 * 14 12 11 28 28 O 1.21277 * 118.48940 * 4.32023 * 27 14 12 29 29 C 1.46927 * 120.63321 * 179.97438 * 8 6 3 30 30 H 1.09002 * 109.47102 * 60.00036 * 1 2 3 31 31 H 1.09000 * 109.47378 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46736 * 300.00354 * 1 2 3 33 33 H 1.08992 * 109.46789 * 60.00180 * 5 3 2 34 34 H 1.08996 * 109.46649 * 180.02562 * 5 3 2 35 35 H 1.08995 * 109.46825 * 300.00447 * 5 3 2 36 36 H 1.09005 * 109.58564 * 246.15336 * 9 8 6 37 37 H 1.08996 * 109.58647 * 6.43737 * 9 8 6 38 38 H 1.08991 * 109.50299 * 174.58677 * 10 9 8 39 39 H 1.09005 * 109.49321 * 294.65130 * 10 9 8 40 40 H 1.09002 * 109.48882 * 178.64908 * 11 10 9 41 41 H 1.08999 * 109.43177 * 58.69300 * 11 10 9 42 42 H 1.09005 * 109.21131 * 37.76672 * 15 14 12 43 43 H 1.08993 * 109.18426 * 278.41215 * 15 14 12 44 44 H 1.08997 * 109.72097 * 287.05154 * 16 15 14 45 45 H 1.09002 * 109.75731 * 166.42143 * 16 15 14 46 46 H 0.96998 * 119.99930 * 180.02562 * 21 20 18 47 47 H 1.08993 * 109.56601 * 162.31241 * 26 17 16 48 48 H 1.09002 * 109.57075 * 282.67346 * 26 17 16 49 49 H 1.09004 * 109.58920 * 113.84576 * 29 8 6 50 50 H 1.09002 * 109.58853 * 353.41886 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7713 -1.4426 6 6 3.3387 1.2638 0.7104 7 8 3.7897 0.2044 1.0913 8 7 4.0255 2.4038 0.9223 9 6 3.4919 3.6949 0.4671 10 6 3.4640 4.6630 1.6540 11 6 4.8603 4.7439 2.2752 12 6 5.2734 3.3622 2.7875 13 1 4.5477 3.0149 3.5229 14 7 6.5972 3.4469 3.4093 15 6 6.7109 3.0767 4.8133 16 6 8.1520 2.6976 5.1595 17 7 9.0452 3.7245 4.5970 18 6 9.8508 4.4861 5.4008 19 1 9.5843 4.6473 6.4349 20 6 11.0069 5.0556 4.8851 21 7 11.5657 6.0786 5.4962 22 14 11.7695 4.3701 3.3237 23 1 11.1647 5.0374 2.1431 24 1 13.2334 4.6191 3.3373 25 1 11.5167 2.9086 3.2496 26 6 9.0325 3.9029 3.1374 27 6 7.6139 3.8573 2.6497 28 8 7.3806 4.2135 1.5141 29 6 5.3216 2.3794 1.6139 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.2570 1.8014 -1.9563 34 1 2.6615 2.7669 -1.4425 35 1 2.8829 1.0774 -1.9564 36 1 4.1313 4.0981 -0.3182 37 1 2.4819 3.5572 0.0813 38 1 3.1611 5.6518 1.3100 39 1 2.7544 4.3040 2.3996 40 1 4.8488 5.4504 3.1051 41 1 5.5732 5.0800 1.5222 42 1 6.0582 2.2270 5.0142 43 1 6.4031 3.9195 5.4320 44 1 8.3907 1.7258 4.7275 45 1 8.2728 2.6583 6.2421 46 1 12.3733 6.4768 5.1356 47 1 9.4747 4.8662 2.8835 48 1 9.6027 3.1020 2.6667 49 1 6.1105 2.6752 0.9222 50 1 5.5179 1.3743 1.9870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071257113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:07 Heat of formation + Delta-G solvation = -61.554349 kcal Electronic energy + Delta-G solvation = -31615.159913 eV Core-core repulsion = 27451.414025 eV Total energy + Delta-G solvation = -4163.745888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.97533 -39.98172 -38.10807 -37.04549 -36.30124 -34.88883 -32.94010 -31.96814 -31.71947 -30.05285 -29.21477 -27.21903 -26.59176 -26.03160 -24.11726 -23.81932 -23.21261 -21.77875 -20.82904 -19.38837 -18.61510 -17.76448 -17.18664 -16.80058 -16.64842 -16.14502 -15.68445 -15.60841 -15.37350 -14.89716 -14.76423 -14.68073 -14.46995 -14.29297 -13.77475 -13.58481 -13.31954 -13.24549 -13.10381 -12.94476 -12.79304 -12.60983 -12.58727 -12.30285 -12.17991 -11.77570 -11.61790 -11.53092 -11.30036 -11.17322 -11.06730 -10.81740 -10.56746 -10.46114 -10.29362 -10.25603 -9.68390 -9.64915 -9.32867 -8.91382 -8.71679 -8.28004 -7.23184 -6.07322 -3.46540 2.41558 2.45209 3.03940 3.25194 3.30023 3.41667 3.44397 3.58114 4.15096 4.41035 4.41159 4.56619 4.61504 4.64906 4.71385 4.75274 4.87247 4.89258 4.97228 5.10951 5.16689 5.18420 5.22129 5.25870 5.29750 5.31179 5.37026 5.48544 5.57511 5.68568 5.71428 5.72316 5.75673 5.82568 5.96665 6.02540 6.09735 6.15855 6.22620 6.30401 6.38457 6.49763 6.66322 6.82952 7.20721 7.63166 7.82827 8.00527 8.17117 8.51806 8.74366 9.54238 9.86351 11.07815 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.002790 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.855679 B =10032.516356 C =10125.884468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.072 3.928 4 H 0.086 0.914 5 C -0.179 4.179 6 C 0.515 3.485 7 O -0.521 6.521 8 N -0.603 5.603 9 C 0.100 3.900 10 C -0.130 4.130 11 C -0.141 4.141 12 C 0.134 3.866 13 H 0.083 0.917 14 N -0.592 5.592 15 C 0.098 3.902 16 C 0.131 3.869 17 N -0.604 5.604 18 C -0.266 4.266 19 H 0.093 0.907 20 C 0.028 3.972 21 N -0.902 5.902 22 Si 0.875 3.125 23 H -0.281 1.281 24 H -0.298 1.298 25 H -0.270 1.270 26 C 0.108 3.892 27 C 0.517 3.483 28 O -0.563 6.563 29 C 0.098 3.902 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.087 0.913 46 H 0.266 0.734 47 H 0.108 0.892 48 H 0.062 0.938 49 H 0.095 0.905 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.180 -5.673 -9.852 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.010 3.990 4 H 0.103 0.897 5 C -0.237 4.237 6 C 0.301 3.699 7 O -0.395 6.395 8 N -0.339 5.339 9 C -0.023 4.023 10 C -0.168 4.168 11 C -0.180 4.180 12 C 0.029 3.971 13 H 0.101 0.899 14 N -0.325 5.325 15 C -0.026 4.026 16 C 0.005 3.995 17 N -0.329 5.329 18 C -0.393 4.393 19 H 0.111 0.889 20 C -0.172 4.172 21 N -0.544 5.544 22 Si 0.704 3.296 23 H -0.208 1.208 24 H -0.225 1.225 25 H -0.196 1.196 26 C -0.020 4.020 27 C 0.306 3.694 28 O -0.442 6.442 29 C -0.025 4.025 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.125 0.875 48 H 0.079 0.921 49 H 0.113 0.887 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.736 -6.123 -10.156 25.642 hybrid contribution 0.259 0.035 -0.711 0.758 sum -22.476 -6.087 -10.867 25.697 Atomic orbital electron populations 1.22889 0.80625 1.03305 0.99995 1.88062 1.19627 1.25125 1.94927 1.21902 0.93527 0.86744 0.96795 0.89662 1.22424 1.03548 1.02752 0.94947 1.20358 0.86087 0.83746 0.79703 1.90721 1.69136 1.29362 1.50306 1.47965 1.21378 1.06502 1.58042 1.22013 0.99480 0.83419 0.97367 1.21896 0.97973 0.99470 0.97510 1.22052 0.96797 0.96616 1.02501 1.21338 0.85164 0.95902 0.94735 0.89884 1.47303 1.07331 1.66152 1.11686 1.22101 1.00391 0.99765 0.80367 1.21315 0.87276 0.91366 0.99575 1.44461 1.47796 1.40018 1.00644 1.18866 1.00859 1.24130 0.95489 0.88910 1.25219 0.96849 0.97336 0.97836 1.69805 1.21922 1.21328 1.41295 0.87139 0.78447 0.80180 0.83787 1.20837 1.22541 1.19563 1.21613 0.90952 1.03137 0.86277 1.21172 0.88394 0.74859 0.84926 1.90533 1.84665 1.49116 1.19900 1.22073 0.84577 1.00705 0.95119 0.93823 0.89091 0.93833 0.91158 0.90148 0.90914 0.90471 0.89620 0.90222 0.91752 0.91548 0.88217 0.91389 0.91743 0.94432 0.89509 0.92441 0.87463 0.92107 0.88726 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.29 16 2 O -0.36 -4.09 9.89 -55.09 -0.54 -4.64 16 3 C 0.07 0.69 2.30 -27.88 -0.06 0.62 16 4 H 0.09 0.59 7.08 -51.93 -0.37 0.22 16 5 C -0.18 -1.32 9.10 37.16 0.34 -0.98 16 6 C 0.51 6.87 7.12 -10.99 -0.08 6.79 16 7 O -0.52 -9.30 15.92 -14.31 -0.23 -9.53 16 8 N -0.60 -7.27 2.97 -172.79 -0.51 -7.79 16 9 C 0.10 0.87 4.98 -3.71 -0.02 0.85 16 10 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 11 C -0.14 -1.81 5.03 -26.69 -0.13 -1.95 16 12 C 0.13 1.85 2.61 -67.83 -0.18 1.67 16 13 H 0.08 1.04 7.73 -51.93 -0.40 0.64 16 14 N -0.59 -9.75 2.79 -167.34 -0.47 -10.22 16 15 C 0.10 1.47 6.45 -4.51 -0.03 1.44 16 16 C 0.13 2.30 6.61 -3.63 -0.02 2.28 16 17 N -0.60 -13.60 2.82 -173.91 -0.49 -14.09 16 18 C -0.27 -7.03 10.13 -15.06 -0.15 -7.19 16 19 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.03 0.77 5.27 -17.43 -0.09 0.68 16 21 N -0.90 -26.76 13.97 55.49 0.78 -25.98 16 22 Si 0.87 21.70 24.16 -169.99 -4.11 17.59 16 23 H -0.28 -6.85 6.47 56.52 0.37 -6.49 16 24 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.27 -6.55 6.60 56.52 0.37 -6.18 16 26 C 0.11 2.39 4.27 -5.19 -0.02 2.37 16 27 C 0.52 10.18 6.95 -11.91 -0.08 10.10 16 28 O -0.56 -11.54 12.49 5.56 0.07 -11.47 16 29 C 0.10 1.43 5.66 -3.73 -0.02 1.41 16 30 H 0.04 0.21 7.87 -51.93 -0.41 -0.19 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.07 0.38 7.87 -51.93 -0.41 -0.03 16 34 H 0.08 0.49 5.41 -51.93 -0.28 0.21 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.50 4.66 -51.93 -0.24 0.26 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.55 5.80 -51.93 -0.30 1.25 16 42 H 0.07 0.82 7.94 -51.93 -0.41 0.41 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.43 7.96 -51.93 -0.41 1.02 16 46 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.11 2.61 5.08 -51.93 -0.26 2.34 16 48 H 0.06 1.35 6.38 -51.93 -0.33 1.02 16 49 H 0.09 1.58 5.97 -51.93 -0.31 1.27 16 50 H 0.09 1.45 7.01 -51.93 -0.36 1.08 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -34.03 374.89 -7.41 -41.44 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -7.93 Total: 0.96 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 0.37 Total: 18.06 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.70 Total: -58.08 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.70 Total: -25.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.11 Total: 17.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.03 -7.41 -41.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.110 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds