Wall clock time and date at job start Sat Apr 11 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00003 * 2 1 4 4 H 1.09001 * 109.47369 * 330.00696 * 3 2 1 5 5 C 1.53002 * 109.46784 * 90.00646 * 3 2 1 6 6 C 1.50698 * 109.47391 * 210.00194 * 3 2 1 7 7 O 1.21280 * 119.99969 * 354.22061 * 6 3 2 8 8 N 1.34774 * 120.00153 * 174.21633 * 6 3 2 9 9 C 1.46927 * 120.63108 * 2.99559 * 8 6 3 10 10 C 1.53188 * 108.77584 * 233.60954 * 9 8 6 11 11 C 1.53038 * 109.31488 * 305.36337 * 10 9 8 12 12 C 1.53042 * 109.53643 * 61.36418 * 11 10 9 13 13 H 1.09000 * 109.49405 * 58.62245 * 12 11 10 14 14 N 1.46499 * 109.49627 * 178.68518 * 12 11 10 15 15 C 1.45654 * 117.70353 * 240.00151 * 14 12 11 16 16 C 1.52990 * 110.77352 * 158.07757 * 15 14 12 17 17 N 1.47274 * 108.18728 * 46.72702 * 16 15 14 18 18 C 1.36929 * 121.35660 * 118.51934 * 17 16 15 19 19 H 1.08003 * 120.00174 * 332.38805 * 18 17 16 20 20 C 1.38812 * 120.00241 * 152.38901 * 18 17 16 21 21 N 1.31612 * 120.00161 * 160.40912 * 20 18 17 22 22 Si 1.86798 * 119.99710 * 340.40552 * 20 18 17 23 23 H 1.48501 * 109.47043 * 95.00750 * 22 20 18 24 24 H 1.48509 * 109.46917 * 215.00314 * 22 20 18 25 25 H 1.48498 * 109.47708 * 335.00527 * 22 20 18 26 26 C 1.47056 * 117.28793 * 298.49501 * 17 16 15 27 27 C 1.33564 * 117.64938 * 59.88865 * 14 12 11 28 28 O 1.21278 * 118.62504 * 4.34768 * 27 14 12 29 29 C 1.46926 * 120.63199 * 182.99437 * 8 6 3 30 30 H 1.09000 * 109.46772 * 299.99531 * 1 2 3 31 31 H 1.09000 * 109.47781 * 59.99539 * 1 2 3 32 32 H 1.09006 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47201 * 181.95521 * 5 3 2 34 34 H 1.09009 * 109.46994 * 301.95201 * 5 3 2 35 35 H 1.08997 * 109.47315 * 61.95407 * 5 3 2 36 36 H 1.09002 * 109.58597 * 113.82236 * 9 8 6 37 37 H 1.09003 * 109.70180 * 353.47063 * 9 8 6 38 38 H 1.09004 * 109.49938 * 185.41110 * 10 9 8 39 39 H 1.09000 * 109.52783 * 65.33324 * 10 9 8 40 40 H 1.08999 * 109.45878 * 301.34982 * 11 10 9 41 41 H 1.08998 * 109.46411 * 181.38935 * 11 10 9 42 42 H 1.09001 * 109.21702 * 37.74610 * 15 14 12 43 43 H 1.09002 * 109.21508 * 278.41147 * 15 14 12 44 44 H 1.09006 * 109.72004 * 287.05471 * 16 15 14 45 45 H 1.08995 * 109.75857 * 166.42072 * 16 15 14 46 46 H 0.97003 * 120.00755 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.56358 * 162.56306 * 26 17 16 48 48 H 1.08994 * 109.56834 * 282.79549 * 26 17 16 49 49 H 1.09000 * 109.58550 * 6.60931 * 29 8 6 50 50 H 1.08995 * 109.59083 * 246.17627 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7712 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.7963 0.2030 -1.0789 8 7 4.0179 2.4058 -0.9364 9 6 3.5084 3.6910 -0.4388 10 6 3.4298 4.6765 -1.6089 11 6 4.7976 4.7639 -2.2899 12 6 5.1836 3.3894 -2.8411 13 1 4.4247 3.0550 -3.5486 14 7 6.4785 3.4809 -3.5201 15 6 6.5280 3.1334 -4.9337 16 6 7.7443 3.7719 -5.6072 17 7 8.9199 3.5358 -4.7520 18 6 9.9951 2.8170 -5.2015 19 1 9.8597 2.0594 -5.9593 20 6 11.2594 3.0619 -4.6833 21 7 12.2068 2.1563 -4.8040 22 14 11.6159 4.6767 -3.8146 23 1 11.4378 4.5012 -2.3508 24 1 13.0134 5.0925 -4.0969 25 1 10.6803 5.7201 -4.3056 26 6 8.8921 4.1040 -3.3960 27 6 7.5297 3.8795 -2.7989 28 8 7.3810 4.0672 -1.6100 29 6 5.2820 2.3892 -1.6850 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.6288 2.7807 1.4428 34 1 1.2618 1.7680 1.9665 35 1 2.9103 1.0968 1.9461 36 1 4.1832 4.0813 0.3230 37 1 2.5156 3.5518 -0.0109 38 1 3.1450 5.6608 -1.2371 39 1 2.6871 4.3304 -2.3277 40 1 5.5444 5.0869 -1.5645 41 1 4.7510 5.4831 -3.1075 42 1 5.6203 3.4878 -5.4222 43 1 6.5894 2.0499 -5.0348 44 1 7.5814 4.8437 -5.7208 45 1 7.9041 3.3184 -6.5854 46 1 13.0904 2.3275 -4.4422 47 1 9.6460 3.6142 -2.7796 48 1 9.0981 5.1732 -3.4438 49 1 5.4590 1.3892 -2.0810 50 1 6.1014 2.6734 -1.0248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071257114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:13 Heat of formation + Delta-G solvation = -61.606880 kcal Electronic energy + Delta-G solvation = -31625.753545 eV Core-core repulsion = 27462.005380 eV Total energy + Delta-G solvation = -4163.748166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.93923 -39.94022 -38.07313 -37.01784 -36.29941 -34.86882 -32.92357 -31.96745 -31.70985 -30.03252 -29.18832 -27.19406 -26.54419 -26.03940 -24.09235 -23.75884 -23.22139 -21.82355 -20.75182 -19.37827 -18.62768 -17.72929 -17.19280 -16.75902 -16.63052 -16.09937 -15.65263 -15.58039 -15.34189 -14.90971 -14.82885 -14.60718 -14.37734 -14.21770 -13.82898 -13.59363 -13.44272 -13.20404 -13.15963 -12.87046 -12.73272 -12.62357 -12.51694 -12.30908 -12.14456 -11.74822 -11.59993 -11.50845 -11.38024 -11.08903 -11.01302 -10.78169 -10.63572 -10.55419 -10.28086 -10.25932 -9.66647 -9.63468 -9.30827 -8.87807 -8.70131 -8.25996 -7.19152 -6.06869 -3.48233 2.47215 2.50733 3.04334 3.25497 3.31000 3.39604 3.43613 3.61410 4.18681 4.41496 4.43733 4.57741 4.61869 4.64491 4.70047 4.74302 4.86595 4.91651 4.99978 5.12196 5.17514 5.18462 5.22211 5.28493 5.31747 5.32964 5.34669 5.47706 5.58201 5.66050 5.71035 5.74256 5.74595 5.83732 5.97430 6.02484 6.12705 6.19306 6.27534 6.29930 6.31486 6.48421 6.70105 6.83331 7.26685 7.66518 7.82994 8.07241 8.18867 8.51950 8.75418 9.54726 9.87732 11.08213 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.002885 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.026625 B = 9703.395796 C = 9946.837694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.072 3.928 4 H 0.085 0.915 5 C -0.180 4.180 6 C 0.513 3.487 7 O -0.518 6.518 8 N -0.604 5.604 9 C 0.098 3.902 10 C -0.129 4.129 11 C -0.138 4.138 12 C 0.133 3.867 13 H 0.083 0.917 14 N -0.593 5.593 15 C 0.098 3.902 16 C 0.132 3.868 17 N -0.603 5.603 18 C -0.268 4.268 19 H 0.092 0.908 20 C 0.030 3.970 21 N -0.900 5.900 22 Si 0.873 3.127 23 H -0.283 1.283 24 H -0.297 1.297 25 H -0.268 1.268 26 C 0.111 3.889 27 C 0.517 3.483 28 O -0.562 6.562 29 C 0.094 3.906 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.036 0.964 45 H 0.086 0.914 46 H 0.266 0.734 47 H 0.104 0.896 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.173 5.636 7.678 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.010 3.990 4 H 0.103 0.897 5 C -0.238 4.238 6 C 0.300 3.700 7 O -0.392 6.392 8 N -0.340 5.340 9 C -0.024 4.024 10 C -0.168 4.168 11 C -0.177 4.177 12 C 0.028 3.972 13 H 0.101 0.899 14 N -0.325 5.325 15 C -0.026 4.026 16 C 0.005 3.995 17 N -0.328 5.328 18 C -0.395 4.395 19 H 0.110 0.890 20 C -0.170 4.170 21 N -0.541 5.541 22 Si 0.703 3.297 23 H -0.209 1.209 24 H -0.225 1.225 25 H -0.193 1.193 26 C -0.017 4.017 27 C 0.306 3.694 28 O -0.442 6.442 29 C -0.028 4.028 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.122 0.878 48 H 0.081 0.919 49 H 0.108 0.892 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -24.637 4.883 8.061 26.378 hybrid contribution 0.069 1.143 0.371 1.204 sum -24.568 6.026 8.432 26.665 Atomic orbital electron populations 1.22885 0.80680 1.03303 0.99939 1.88070 1.19580 1.25125 1.94915 1.21905 0.93560 0.86722 0.96769 0.89737 1.22457 1.03592 1.02715 0.95015 1.20358 0.86063 0.83826 0.79797 1.90737 1.68661 1.29224 1.50579 1.47991 1.23974 1.06589 1.55460 1.22024 0.99909 0.83622 0.96879 1.21885 0.97872 0.99409 0.97623 1.21972 0.97346 0.96749 1.01583 1.21356 0.85859 0.95658 0.94297 0.89911 1.47347 1.07599 1.66699 1.10893 1.22103 1.00100 1.00780 0.79626 1.21317 0.85669 0.97691 0.94781 1.44440 1.17873 1.62727 1.07765 1.18854 0.84121 1.13129 1.23432 0.89046 1.25296 0.95514 0.97572 0.98654 1.69810 1.03977 1.32931 1.47407 0.87091 0.77137 0.86077 0.79440 1.20940 1.22461 1.19304 1.21651 0.92564 0.99414 0.88049 1.21345 0.87003 0.74585 0.86471 1.90529 1.84814 1.53091 1.15730 1.22231 0.85565 1.00633 0.94413 0.93857 0.93867 0.89091 0.90104 0.91176 0.90880 0.90520 0.89476 0.90279 0.91654 0.88954 0.91664 0.91494 0.91703 0.94599 0.89528 0.92426 0.87827 0.91948 0.89215 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.30 16 2 O -0.36 -4.28 9.89 -55.07 -0.54 -4.82 16 3 C 0.07 0.72 2.30 -27.88 -0.06 0.66 16 4 H 0.08 0.61 7.18 -51.93 -0.37 0.23 16 5 C -0.18 -1.39 9.09 37.16 0.34 -1.05 16 6 C 0.51 7.22 7.12 -10.99 -0.08 7.14 16 7 O -0.52 -9.83 15.93 -14.29 -0.23 -10.05 16 8 N -0.60 -7.62 2.97 -172.77 -0.51 -8.13 16 9 C 0.10 0.85 5.09 -3.71 -0.02 0.84 16 10 C -0.13 -1.07 6.08 -26.61 -0.16 -1.23 16 11 C -0.14 -1.63 5.03 -26.69 -0.13 -1.77 16 12 C 0.13 1.84 2.61 -67.81 -0.18 1.66 16 13 H 0.08 1.04 7.73 -51.93 -0.40 0.63 16 14 N -0.59 -9.74 2.79 -167.10 -0.47 -10.20 16 15 C 0.10 1.47 6.45 -4.50 -0.03 1.44 16 16 C 0.13 2.28 6.60 -3.62 -0.02 2.26 16 17 N -0.60 -13.58 2.77 -173.69 -0.48 -14.06 16 18 C -0.27 -7.14 10.11 -15.06 -0.15 -7.29 16 19 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 20 C 0.03 0.84 5.25 -17.43 -0.09 0.75 16 21 N -0.90 -26.96 13.97 55.49 0.78 -26.19 16 22 Si 0.87 21.56 24.30 -169.99 -4.13 17.43 16 23 H -0.28 -6.93 6.84 56.52 0.39 -6.54 16 24 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.27 -6.34 6.23 56.52 0.35 -5.98 16 26 C 0.11 2.44 4.31 -5.02 -0.02 2.42 16 27 C 0.52 10.13 6.98 -11.65 -0.08 10.05 16 28 O -0.56 -11.52 12.49 5.56 0.07 -11.45 16 29 C 0.09 1.46 5.65 -3.71 -0.02 1.44 16 30 H 0.04 0.23 7.83 -51.93 -0.41 -0.18 16 31 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.50 5.29 -51.93 -0.27 0.22 16 34 H 0.07 0.40 7.83 -51.92 -0.41 -0.01 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.51 4.48 -51.93 -0.23 0.28 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.33 6.10 -51.93 -0.32 1.01 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.77 7.94 -51.93 -0.41 0.36 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 1.42 7.96 -51.93 -0.41 1.01 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.10 2.52 5.60 -51.93 -0.29 2.23 16 48 H 0.06 1.36 6.10 -51.93 -0.32 1.04 16 49 H 0.09 1.61 7.02 -51.93 -0.36 1.24 16 50 H 0.10 1.86 5.65 -51.93 -0.29 1.57 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -34.59 375.11 -7.42 -42.01 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.93 Total: 1.19 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 0.38 Total: 18.62 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.69 Total: -58.58 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.70 Total: -26.33 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.13 Total: 17.43 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.59 -7.42 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.597 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds